Array 1 71074-70746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHJ010000002.1 Shewanella algae strain 97087 97087_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71073 28 100.0 32 ............................ AAGCTGTCAGAGGCCATTGCTTATCTGGAGGA 71013 28 100.0 32 ............................ GGTGAAAGAAACCGTCATGTTAGAGCGCCCCC 70953 28 100.0 32 ............................ TGATAGACCAAATCAAGGTTTTGGAGGAGGAA 70893 28 100.0 32 ............................ TGTCGCCGGCGATGAAATCCATTGAGTTACGA 70833 28 100.0 32 ............................ TTGGGATGAAGTGTGGCCATCTATGCCGATTT 70773 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTGAACTGCCGAATAGGCAGCTGAAGAT # Left flank : TTTTTCACTCTCAGTGACGTTTTAGAAGTCCCTGATAGCTGTAAAGAAATACGGTTTAAGCGAAACCAAACCATAGCCAAAATATTTGCCGGGGACAGTAGAAGGCGATTCGCACGTTTGAAAAAAAGAGCCGAGGCTAGAGGTGAGGCCTTTACGCCTGCCCCCCGAAACCCACCTAAAGAACTAAACCCGTTTCACTGCGTAGCGGTCAGCAGTGCAAGCACAGGCCAAGACTTTTTACTTCACATACAAAAAGAGACGGTAAATCAGGCGACATCGATTGAATTCAATCAATACGGACTCTCGACTAACCAAAAGTTCACCGGAACAGTGCCAGATCTGAACCCATTCAAGCCGAACGATACCCGTTAACCTTTTTTGTGAGCAACGCTCAACCATCTGAATTTATACCATTTTCTTCCGCATCTTTTTTAGAAGGTAAAAATAGGATAAATTCATCAACCTATTGAACACTAGTGAAATTTTAGATAGTGTTCATA # Right flank : AAAAACAATCGTTTCGATGTTTAAGTTAATGCAAACAACTGCCGAATAGGCAGGGCTTGTTCTACTTACATGACAAGTGAAAGATGCCCCCTTAAGAGGGCATCTTTTTTATGGGGCAGAGTAGGCTAGGACAGATTCTCCAGATCGTTCGTCGTTCAGGCGAATTATGGTTACACTGAGCTAGTACACCTTAATATATAGAGAAACACGCAGGTATAGAGCGAGACGAATGACCAGTTTGCCTGGTATGAGACTTTATTTATTCCTCATCTACACTAGTAGCGGGTTTTGCTGCATCACCAATTTGTCAGCTTATGAGTTTACTTTATGTCAACTTATGGATTTATACTACCCGTAACTCGCTGTTTTCTTGGCGGTGACTATGTCAAGTTTTGGTTTTCGTGACATGTGGCTCGCCGCATATTTTGCTCCGCGCTTTTGGGCAAGACTTACGGATCCGCCCCATAAACAGAGTTCAGGAAATACCACAATGCAGTTAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGCAGCTGAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 156974-150719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHJ010000064.1 Shewanella algae strain 97087 97087_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 156973 29 100.0 32 ............................. CCTGACCGGTGCCAAGCGCAGCGGGACAGAAC 156912 29 100.0 32 ............................. GCGTTAGTGAAATAAGCGAACAGCAAAAACAG 156851 29 100.0 32 ............................. GTCGGGATGCGGTCCGAAAGTGCCGTCCGATA 156790 29 100.0 32 ............................. TTTATTTTTTTGGTGGGGGGTTCCACAAAACA 156729 29 100.0 32 ............................. GTCGGGATGCGGTCCGAAAGTGCCGTCCGATA 156668 29 100.0 32 ............................. CGTGTGGCGCAAAGCGGTCGAGGTGTTTGATA 156607 29 100.0 32 ............................. CAGCTGTCGGTACCGAGGGCGTGATCGTGAAC 156546 29 100.0 32 ............................. CGTTTCACCATAACGACCAGCGATTGTACTGG 156485 29 100.0 32 ............................. ACATGACGTTCAGTGTCTCGTTTTTTAGCGAG 156424 29 100.0 32 ............................. CAACTGCCCGTTAATGGTGATACTCATTGTGT 156363 29 100.0 32 ............................. CGTTTAGGCATTGGTACAGCGGCGAACTGACC 156302 29 100.0 32 ............................. CGTTTCACCATAACGACCAGCGATTGTACTGG 156241 29 100.0 32 ............................. CCAGCGCTCTGCAACTCGGTGCGGTGGTGGGT 156180 29 100.0 32 ............................. TCCTCAACGTTACGCATCCGCATAGCCACTTC 156119 29 100.0 32 ............................. AATACGCGCACGTCAGCAGTGATAACAGCCAA 156058 29 100.0 32 ............................. CTCCTTGACTTCGTTGAGCCAGAACCCGGTAG 155997 29 100.0 32 ............................. CTACGACGTGATCGGCAAAGATACACGTCCGC 155936 29 100.0 32 ............................. TTATGGCGGAGTGGGGCGGATATCACCGGGCA 155875 29 100.0 32 ............................. TTACAGCAGACGTCCCGGGTGATTTGGTCCAC 155814 29 100.0 32 ............................. TTACGTGCTCTTATATCGCTCTTATTGTTGTT 155753 29 100.0 32 ............................. CGCCCACCGATGACTGCACCTTGTCAGGTGAC 155692 29 100.0 32 ............................. CTGCGGAACTGGCAGTGATATAACCAGCAGAA 155631 29 100.0 32 ............................. CTGCGGAACTGGCAGTGATATAACCAGCAGAA 155570 29 100.0 32 ............................. TGCTCCCTGTGGCATTCTGGTGAGCTACAGGG 155509 29 100.0 32 ............................. TGCTCCCTGTGGCATTCTGGTGAGCTACAGGG 155448 29 100.0 32 ............................. TGGGCTAGGGGGTGCATTACAATCTATTAGAG 155387 29 100.0 32 ............................. AACCGCTACTTCAACGAAATGCTGATGAACTA 155326 29 100.0 32 ............................. CAGCTTGATTGAATCCAAGCGGGTTACCTCAT 155265 29 100.0 32 ............................. GTGGCAATTGCCGCCTGGATCTCTGCACCATA 155204 29 96.6 32 ............................C AGCAACTGCGCCGCATACACAAGCAAGATGGC 155143 29 100.0 32 ............................. CCATGTGGCAGGCGTTAGAGGCAGAACTTGCC 155082 29 100.0 32 ............................. GTGGAAAAGGAAATCCGCAGTGCCTTTGCGGT 155021 29 100.0 32 ............................. CAATCAGAGCACCACGTTTGGGATCCAAGGGG 154960 29 100.0 32 ............................. GCTGGGAGGTCGTGGCTTGGATTGATGCCGAG 154899 29 100.0 32 ............................. CACACATCACCAGCGCTATTGGAATTAGCCAC 154838 29 100.0 32 ............................. GGACTGCGCGAGTTCAACGAGCTGGCCCGTAA 154777 29 96.6 32 ............................C GAAGCACTAGCGGTTACACAAACTCTGAACTA 154716 29 100.0 32 ............................. CAGACAGCGGCCAAGGCTAAGGAAGCTGAAGA 154655 29 100.0 32 ............................. GCATTGTCACGATAGGCTTTTTGGGCGTAGTC 154594 29 100.0 32 ............................. CTGCAACTCGGTCGAACCGGTGCCAGTGGCAT 154533 29 100.0 32 ............................. CTGAGACTAAGCTGCTAGCATGGCGTAAATAT 154472 29 100.0 32 ............................. TCGGAAAACATCGAAGACCGCAAACAGTACGA 154411 29 100.0 32 ............................. CGCAACACTATTTTGAGGATTGTCTGTTTCAC 154350 29 100.0 32 ............................. CTGTTTACCAGTATTGAGCCAAACCCGGATTA 154289 29 100.0 32 ............................. CCTTCAGCCACGGCGCCAAAATCCTCGCGTTC 154228 29 100.0 32 ............................. TCTTCCGTCAGCTTGGTTTGATTGCTGGCGAT 154167 29 100.0 32 ............................. AATTTTTCTAGAGAGCAATGGATTGACTACTA 154106 29 100.0 33 ............................. CTCATGTTGCTCACTCTTGTTTGGGTTCAGAGC 154044 29 100.0 32 ............................. CATGGCGCATCTGTTGGAAATTCGGTTAAGCC 153983 29 100.0 32 ............................. TAAAGGGCCACCAGTAAGTTCTCAGTCCAGTC 153922 29 100.0 32 ............................. CTCTGTTAGTGCATCCTGTGCGTGTTGCACTA 153861 29 100.0 32 ............................. CCAATCTTAGCGAGATGGAGCTGGTTGACGCT 153800 29 100.0 32 ............................. CTGAATAGCCGTGGAACAGGGCTAATATTGAC 153739 29 100.0 32 ............................. CAAAAAGGCGATTCTTGGCTCGTTCTCTGGCG 153678 29 100.0 32 ............................. CGTGCTGACTGGCGTAAGCGGTGCAATGTCAT 153617 29 100.0 32 ............................. TATTGTGCGGAGTCGTGGATTTGACTTCGTCA 153556 29 100.0 32 ............................. GCGAGTCAGGTCATCAATTTGACCCTGAACCT 153495 29 96.6 32 ............................C TAAATTCTCGCAGTTTCGGTGAGAAGGGGCGC 153434 29 100.0 32 ............................. GCACCACAATTGAATTGTTGGCGCAAAAAATT 153373 29 100.0 32 ............................. ATATTAAGAGCAATTAGAAGGCGTTCGCATAA 153312 29 100.0 32 ............................. TTCGGCCAGTTCAGCGCCAAGTCAGTTGCAGC 153251 29 100.0 32 ............................. ACTTTGCCAGCAACCGTTGACGGGATCGACTG 153190 29 100.0 32 ............................. CAGGTTACTGTCGAGTTAGTTTGTAAGCGGAA 153129 29 100.0 32 ............................. GCAATAACTTCGGGGTCTGTCATAGCTGATAA 153068 29 100.0 32 ............................. CATCTGGGCGTGGGGTGTTGAACCTTCGATCA 153007 29 100.0 32 ............................. CGGTAACCGCCCATTCGCGAATCGAACCGTTA 152946 29 100.0 32 ............................. TAACATCAATTTGTTTTATCTCGGCTGAATAA 152885 29 100.0 32 ............................. CTGATGGATGTGAACATCCGGCGGCTCACTGG 152824 29 100.0 32 ............................. ACATGCCATCGAAACACATAGATGATCAAACG 152763 29 100.0 33 ............................. GTTATTTCGTCGCTAGTCGAAACAGGCGATAGT 152701 29 100.0 32 ............................. TACTCTGAAAGGAAACGAGCATAGTGGTCTAA 152640 29 96.6 32 ............................T TCAATATGGCCATGCCTCGGCTGGCTGAAATG 152579 29 100.0 32 ............................. TTATGGCAGAGTGGGGCGGGTATCACCGGGCA 152518 29 100.0 32 ............................. AAAACAATCCGATGAACAATCCAGCAGCACGC 152457 29 100.0 32 ............................. CGTTAGTGATAGTATCAATATTAGTTCAATCA 152396 29 100.0 32 ............................. TGTTGATGTACGTAGCGGACAGGTCGAATCGG 152335 29 100.0 32 ............................. TCCATGAGCATCTCGTCGCGAGACATTACTGC 152274 29 100.0 32 ............................. TCGAGTGACCTCATCGGGATCCGCCCGGTGCT 152213 29 100.0 32 ............................. CGTTCGAGCAGGCCACGCTGACCGGGGATCCG 152152 29 100.0 32 ............................. TAGGCTTGAACATACAATCCAGTTCCGACTGA 152091 29 100.0 32 ............................. GAAAAATCCAACACTGGGAATTGGGTCTGGCC 152030 29 100.0 33 ............................. CAAAAATCGTTTGCTTGCTATGATTCGACTCGC 151968 29 100.0 32 ............................. TGCTCTAGAAACAAATTGATATTGGTAACTAT 151907 29 100.0 32 ............................. CTGGAATTCGAGGAAATCAAAAGAGCACTGCC 151846 29 100.0 32 ............................. TTGGAGCGGTATTATTACCCGCTTCCAAATTC 151785 29 100.0 32 ............................. CCATTTCAGCCCCTTGGGTCGCCAGAGTCCAC 151724 29 100.0 33 ............................. TTCGATGTGAGGCCAGTAATTAGCCCCTCCTGC 151662 29 100.0 32 ............................. TTGGGTTTCCCTGCGGGGCTGGTCTGGCAGAG 151601 29 100.0 32 ............................. GAACATCTATCTCCGACTTGGTGTCTTGCCTT 151540 29 100.0 32 ............................. CAATGCCTTTGATTTAGTCTGGCAACCCAAGG 151479 29 100.0 32 ............................. GCCGCAAACGCACTCACCATGTGGGGCGCCAA 151418 29 100.0 32 ............................. CCCCTTTAAAGCCCCTTCTTCAGTCATTCCTG 151357 29 100.0 32 ............................. CCCTCGCTTACTGCGAAAATTCCGAGATTCTC 151296 29 100.0 32 ............................. AATCATCCATATGAGAAGCTGCGTGTGTTGCC 151235 29 100.0 32 ............................. TACAAGTATGTTGACGTTATCATTAACCAAGG 151174 29 100.0 32 ............................. GCAATGGACAACTCCACATATCTTGCAACAGA 151113 29 100.0 32 ............................. CCACGCGATGCAGTGACACTTTTTAACCCAGT 151052 29 100.0 32 ............................. CTATGGCAGCCAACTCCGAACTGGAAGAGCTG 150991 29 100.0 32 ............................. GCCGCTGTCAGGCTTTCAAACCAGATAATTCA 150930 29 100.0 32 ............................. GCACCGCCGTAAGGGCCGCCGATTATCAAATC 150869 29 100.0 32 ............................. CAGATGCCGACCGGCAGATCGCTTGTCTTGTC 150808 29 96.6 32 .T........................... CTCGAAGAAGTAGCCGCAACGGTTGAGGCTAT 150747 29 89.7 0 ............T.............GT. | ========== ====== ====== ====== ============================= ================================= ================== 103 29 99.7 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCTTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGAGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAATCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTATAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCCACTCGCAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCATGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAACTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGTGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //