Array 1 7571-6875 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRCJ01000017.1 Campylobacter jejuni strain CB297 17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7570 36 100.0 30 .................................... CCTAACCTAAAGTATTTTTCACCCTTGAAA 7504 36 100.0 30 .................................... TCTTGACCTAGCTTTTCAAGCCAAAGTTTG 7438 36 100.0 30 .................................... TATTCATCATAATTTTGCCAATAATCAAGA 7372 36 88.9 30 ......T...............C..G..A....... AGTCTTCTTTTAAGATTAATGGCAAAAAGC 7306 36 100.0 31 .................................... TGCTCAAAGATCGTTTTGATAACAATTCGAA 7239 36 100.0 30 .................................... ACCGCAGAATAAATATTATGCTTAAGTAGG 7173 36 100.0 30 .................................... TATTCTACCCAAATACGCATTAAACTCATC 7107 36 94.4 30 ..........GC........................ CAAATCCAAAGAGTGTGAAATGGAAAATTA 7041 36 97.2 29 ..........G......................... ATCTTAGCACCATAAATCGCTAGCTATAG 6976 36 94.4 30 ......T...G......................... CTTTCAAAATCAATTTTGCAAACTTTAAAA 6910 36 86.1 0 ......T.....GG.T...................A | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 96.5 30 ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Left flank : GTAAGAACTGATTTATTTGTAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGCATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGCATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGTTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTTAGATAAGTCT # Right flank : TAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCACAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATCGTTGTAATTTTGGCAATTTTAGAATCGCTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTTCCCTCCAATTATCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGGATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACCA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 3639-3405 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRCJ01000040.1 Campylobacter jejuni strain CB297 40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3638 36 100.0 30 .................................... TTCAAAAAAATTTATAAAGGCACTTTGCCT 3572 36 100.0 30 .................................... CGTATATTCTAAACTATCTGAATTTTACCA 3506 36 100.0 30 .................................... AGACAATGATGATTTAATTAAAAGGATTAA 3440 36 94.4 0 ...........C..........C............. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Left flank : ATAAAATAGGCTTTTTAGATAAGTC # Right flank : AAAAATTTTGTAAAATAAAACAATACAAGATTCGGTTATGAGAAATTCATAGCAAAAATACTTTTACAAAAAAAATAGAAAAGATTGGCAAAAAATTAGAAAAGCAAAAAACAAGATTCGCTATAATAAAAAATCCGCTTTAGAGCTGCAACTCTAGCGGAAAATTACAACAAAGGCTAACTATGAAACGACATAGTAAGCGTTTTGTGAGATTATACCTAAATTTTAGGTTTTTTAAGCTTAAAGTTGAAGTATTTTTCTAGCAAAACCGCAGGGGCAGAAAAGCCCCTTGCCTTTGTTAGTACATGAAACTACAAATTCTCATTCATTTTTCCAAGTCAAATAAAAAAGAAATCCGTTTCAAAACACAGCTCAATAATCCCAGTCTTAATACTTTTAATTAAATATACAAAGGCAACAAGATTAAGAGAAGTGCGTTCGGTTTATAAGTGATACTTAATAAAAAGCGTGTATAATACATACTCATATCTATTAATTTA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //