Array 1 629245-630516 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024172.1 Alicycliphilus denitrificans strain I51 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 629245 29 100.0 32 ............................. GCGATCTGGCCCGACATGTCGTAGGTACTGCC 629306 29 100.0 32 ............................. TCGCGGTGCAGTTCATCTTCGCCGCGCCCGGG 629367 29 100.0 32 ............................. GGCCGGCGCAGCAGGGGGGAGGGGTATGGAGG 629428 29 100.0 32 ............................. AAGGAGAACCTTAAATGTTCCAATCTACTGTA 629489 29 100.0 32 ............................. GAAGCCATCACCGGCTTCAACACCAGCCTCAA 629550 29 100.0 32 ............................. ACATGCCTGTCGTTCAGGCGCGTGAGTGGCTC 629611 29 100.0 32 ............................. CGCGCCGCCCACACCTCGCGCGGCTTCGGGTG 629672 29 100.0 32 ............................. ATCAGCGCATCCGTTAGCGGCGGCGCGGCGGG 629733 29 100.0 32 ............................. AGCGGCTATGACCAGACCACCGTCTGCTATGA 629794 29 100.0 32 ............................. TGGTACGACCCCATCCGCGACGACTCCATCAT 629855 29 100.0 32 ............................. CTCGCCGGCAATCTGGATGCCCTTGTCGGTCA 629916 29 96.6 32 .......T..................... AACCTGGCATGAGAGATATCGGGCATGCACTT 629977 29 100.0 32 ............................. CATTCCAGCTCGGGCGGTGACGCCAAGACTGT 630038 29 100.0 32 ............................. GCCACCGCAGGCACCATGCAGCACCGTGAGAC 630099 29 100.0 32 ............................. CGACATGCGCTACACGGGCTACCGCCCCACGC 630160 29 100.0 32 ............................. GACACTGGCGCGGCGGTGTATGGCAATACGGA 630221 29 96.6 32 ............................G CATCGGCGGCATCACGTCGCCCAGCATCGCTA 630282 29 100.0 31 ............................. CGCGAAGCAAATGCACAGCTTGCCAGCCGCG 630342 29 100.0 54 ............................. TGCACGGAGCGGGGATAGGCCCAGCTGCGAGGCATAGCGCGCGCCAGGGCTGTA 630425 29 93.1 32 ............T............A... CGGCTCAGGAGCATGTCCACCAGGCGGCGCTT 630486 29 100.0 0 ............................. | GG [630510] ========== ====== ====== ====== ============================= ====================================================== ================== 21 29 99.3 33 GGTTGCCCCGCGCGAGCGGGGATAGGCCC # Left flank : GCGATCGGATGAAACCGTCGACAGGCTGGTACGGCGCGAAGCGGCGACGGTGTTTCGCAAGCAGCAGGTGATTGCTTCGATGATCGGCAGCATCCAACGTGTTCTACGCATGGACGAGGTGGGCAATGGCGCTGGTGATGATCGTGATCCGTGACATGGCGGATCGCTTCCACGGATTTTTATCGTCGACCATGCTGGAGGTCGCGCCCAACGTGTTCGTTTCACCCCGCATGAACCAGGGTGCGCGTGAACGGGTATGGCAAGTGCTGACCGACTGGCACGGCAACATACCGCAAGGCAGCGCCGTGATGGTCTGGCGTGACTTGAACGCTGTCGGCGGTGTGGGGATCTCCCATCTGGGTGATCCGCCGCGTGAATTGATTGAAGCCGATGGCATGTGGCTGGTGCGCCGGCGTACTTCATCATGATCGGAAAAGCTCCTTAAAATTTCGCATCTGTTTCTGGTTTTTTTCTTGCATGACAACAAGTTAATTGCAAGA # Right flank : CATGAAGGGGGGCGCTGTCGGCCAAAGAACATGGGGGTGCTCTGCTCGCACGGAAATAGGGAATAGTTACGGCAAGCTGTACAGAACTCATCATAGGAGTGTCCCGCAAGGATGAGTTCATTCCATGAATGGTTTTTGGTCGCTCACCGATACCCAACGCGTATCACAAACGGGTTAATAAATATTGGACGCCTGCAAGTGAGCTTCCAATAATCCCTGCCACTTATCGAGCAGGTGGAGAGTTGTGCATGAGGCCTTTGCAGGGGGTGCGGGTATTGGACCTGTCCAGCGTCATCTTTGGTCCGCTGGCCAGCCAGGTGCTGGCCGACTATGGCGCCGAGGTCATCAAGATCGAGCCGCCCAAGGGCGACTCGACGCGCCACACCGGGCCCGCGGCGGAGCCGGGCATGGCGGCCATGTTCCTGGGCTCCAACCGCAGCAAGAAGAGCGTGGCGCTGGACTTGAAGCAGCCCGCGGCGCAGCAGGCGCTGCAGGCCCTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCGCGAGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 669202-666352 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024172.1 Alicycliphilus denitrificans strain I51 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 669201 28 100.0 32 ............................ ATGTCCGCTGACCTTTCGGTGAGCGAGCCTGG 669141 28 100.0 32 ............................ CACCTGCTCAATGAAATCAACGAGGGCAGCAC 669081 28 100.0 32 ............................ GCCGAAGCCGATGGGGGAGCCGGCGCCCGACA 669021 28 100.0 32 ............................ CTGGTGCCTGGACTTCGAGCACGGCCGCAGCC 668961 28 100.0 32 ............................ TGGCCCACGAAGTCCAGGCCGCGGTCCACCGA 668901 28 100.0 32 ............................ TCCACTGGTACGAACTGGACGCCATCGCCAGC 668841 28 100.0 32 ............................ ACCATGCGGCCCTTGATCGTGCCGATGGACGG 668781 28 100.0 32 ............................ GCCGAGGCCTGCGCCTGCACGCGCCCCTCGAT 668721 28 100.0 32 ............................ TTCGCGGTATCGCTGCCCGCCGCCGCCATCGC 668661 28 100.0 32 ............................ AGCGTCTTGTCGTCCAGCCACTCGAAGGGGCG 668601 28 100.0 32 ............................ TCCCCGCAGCCTGCAGAACCCGATGCGCAGCA 668541 28 100.0 32 ............................ AGCCTCCCTGTACTACTGGGGCGACTGGCACC 668481 28 100.0 32 ............................ ACACGGGGGGCGTGATCACGCTGCCGGCAGGC 668421 28 100.0 32 ............................ CCGTAATCGCGGCGACTGACCCGGCACGCGGT 668361 28 100.0 32 ............................ AGTCTGCGGGCCGCAAGTCTTGGCGGCTCACT 668301 28 100.0 31 ............................ CTTGGTGAGGATTCCAAGCTTGGATTCGTAA 668242 28 100.0 32 ............................ GTCACCTTGTGGGCAACGAACCCCACCTCGGT 668182 28 100.0 33 ............................ CACCACCACCAACCCCTGAAAGGACCACTGTGC 668121 28 100.0 32 ............................ TCCAGAAACATCCTCTTCTTGCGCCAGCAGGG 668061 28 100.0 32 ............................ TGCCAGCTGGGACGAGACGGACACGACAAAGC 668001 28 100.0 32 ............................ TGGACAACGTCGATACCGAACTTCATGGCCGT 667941 28 100.0 33 ............................ ACCTCCGCCCGTCGAGCCGGCGCCGGGGACGCT 667880 28 100.0 32 ............................ GATCCCGGGCCAGGCCGCGGCCTTCGTTCAGC 667820 28 100.0 32 ............................ TGGGAGAGACGGCATGAAGCACCTTCTGGTCC 667760 28 100.0 32 ............................ TTGTTCGCGGCGCTGAAGGCCTTTTGCCAACC 667700 28 100.0 32 ............................ ATGACCGTCTAAGGAGTACCCACACCATGCAG 667640 28 100.0 32 ............................ TGCACGACCTGCTGATGCACGTCGTTTGCGAT 667580 28 100.0 32 ............................ ATCAACGCCGCGCCGGGCATGGACGGTCAGGC 667520 28 100.0 32 ............................ TTCGAGCTTGTGCTGAGCGGCACGCCGCGCAC 667460 28 100.0 32 ............................ ATAGCGCCGGCCATCTTCTCGCTGTCGATGGT 667400 28 100.0 32 ............................ TCTGGCGCCATCGCCATCGGGCGCTTGGACGG 667340 28 100.0 32 ............................ AGCAGAAGCCGCCGCTACCCAAGCCGGTGAAG 667280 28 100.0 32 ............................ ACCTTGCCCATGGATTCGGTGATGACGTCGGG 667220 28 100.0 32 ............................ ACGATGAGCTGCATGCCGGGCTCCAGCACGGC 667160 28 100.0 32 ............................ GTTTCGAAAGCGAATCAGCAGATATGCCCCTA 667100 28 100.0 32 ............................ GCCCAGCGCGTAGACGATGCCGCCCAGCACCA 667040 28 100.0 32 ............................ GTGATGCTGCGGCCGTCCGGGTCGGCGTAGAT 666980 28 96.4 33 ...................A........ CTAACCAAGCGGCCGGACTTCCCGAAGCCCTTC 666919 28 100.0 32 ............................ AGGCGGCGACATCTACTCCGCCGCAGTGAGTT 666859 28 100.0 32 ............................ GTGATTGCTCAGGCGGGCGGGAAGAAAAAAGC 666799 28 100.0 32 ............................ AATGGGGAAAGGCCCCGTAGGGCCTTGGTGTT 666739 28 100.0 32 ............................ AGTAGGCGCCGTTTTCCAGCACGGTGGCAGGC 666679 28 100.0 32 ............................ ACGAACACCGCGCCGCGGCGCAGCAGGTCCGT 666619 28 100.0 32 ............................ TGGCCCGAGATGCCGACACCGCCGCCCGGACT 666559 28 100.0 32 ............................ TTAATGGCGCCCTTGAACGACTGGAACAGCTC 666499 28 100.0 32 ............................ ATCGCCCAGGCGCTGGCAAGCCGCTGCGAGCC 666439 28 100.0 32 ............................ TATCCGGCGTGAAGCGGCAATTTGAAAGGCAT 666379 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.8 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : TGCACTGGACCAGTTGATGACCCAGGCTTGGCTTAAGGGTATGCACGACCATGTCCAGATCGCGGACACGCGCCTCGTTCCCGCAGATGCGCAGCACCGCATCGTGAGACGTCGTCAGTTCAAGACCAGTGCCGAGCGCCTGCGCCGCCGACGCATGCGGCGCAAGGGGGAAACCGCCGAGCAGGCCTCGGCAATCATTCCCGACAGCGTGCAGCGTGAGCCAAGCCTGCCTTATGCACAACTGCGCAGCATCAGCACCAGCCAGCCGTTTTGCCTGTTTGTGGAACATGGAGCACTACAACCCACTATTGTGGGTGGCCGCTTCAATACATACGGACTGAGCTTGGGAGCGACAATTCCTTGGTTTTGACCCTTTTTCATGCTCCCATCGCAGTGCCTAGGGAAATCAATCACTTAACCAGCACTTCGGAAATTAGGGTGTTGGTCCCTATGTGGCATTAGTTCCTTAAAAATCAGAGAGTTAGAGACTTTAGAGTTCA # Right flank : ACCCCTGTATTGCGCCGTGCTGCCCGCTGTGAATCCGCTGCCACATAAAAAAAAGCGCGCCAAAAACCTACTGCAACGCCAGCGCCAAGCACACCGCCAGGCTCATTCAGCAAACAAGCCCCCCGCCGCACGCGGCGGCGCCACGCCCAGGTGCCGGTAGGCGGCCAGCGTGGCCACGCGGCCGCGCGGGGTGCGCTGCAGGTAGCCCTGCTGGATCAGGTAGGGCTCGATCACGTCCTCGATGGTGCCGCTCTCCTCGCCGATGCTTGCGGCGATGTTGTCCAGCCCCACGGGGCCGCCGTCGAAGCGGTGGATCACGGCCTCCAGCAGTTTCCTGTCCATCACGTCGAAGCCCTGCGGGTCCACGTCCAGCATGGCGAGCGCGCGCTGGGCTATGGCCTGCGTGATGCGTCCGTCGCCCTTCACGTCGGCGTAGTCGCGCACGCGGCGCAGCAGGCGGTTGGCGATGCGCGGGGTGCCGCGCGAACGGCGCGCTATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //