Array 1 4159-2892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHY010000008.1 Clostridium perfringens strain 1805-11 NODE_8_length_76740_cov_97.4358, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4158 29 96.6 36 C............................ GCCATATGGAGATGACCAAAGAAATGGTCTAGATCA 4093 29 100.0 35 ............................. TCAACTCTATATTTAATTAAAGTAGAACAAGAACT 4029 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGGATAATTTACTTCATTA 3964 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 3899 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 3834 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 3769 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 3704 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 3638 29 100.0 36 ............................. TATGGATTTATGACTGGAATGTTTGCATGGTTTTGT 3573 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 3508 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 3443 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 3378 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 3313 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 3249 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 3184 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 3119 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 3053 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 2987 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 2921 29 86.2 0 .................GAA....C.... | C [2894] ========== ====== ====== ====== ============================= ===================================== ================== 20 29 99.1 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AGTATAGAATGTAGTAAAGAGGATTATGTTAAATACCAGTCATATATAATCTAGAGTGATTCTAGGTATCTATATAAACAATGCATAAATGAAAGAGGATGTCGCATACCAATTGAAAATTGTTCATGTGATAGCCTCTTTTATATTTGATAAGTAATTAGAAATGATTTTATTGTATGTGTTTATTGCAACAATAAAGTAAATAACTACAAATGATGCTAAAGACATTAAAATAGGATAAATAAATACTTCCAAAACCAATTAAGCTAGAGATAAATATACTTGTAAGAATGACTTTGTCTTTGTACGACTACGATGGGGAAAATGTGTATTAAAGAAATAACAAAAATACTTTAAATGAAATGTGTAAATTAAGTTAATGCTATAATATAATAAAGTGAACAATATTAAATTAATACGAACTAATAACAAAAATGACTGGTAATATGCACCAGTCATTTTTATTATTTACATTTAACAACCAAATAGTTTAACATAGC # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 13960-8693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHY010000008.1 Clostridium perfringens strain 1805-11 NODE_8_length_76740_cov_97.4358, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 13959 29 100.0 36 ............................. AAAGGAAAGAGTAAACCAGAAGCTAAGAAAGAACCT 13894 29 100.0 37 ............................. GGGTGGTAACTTGTTTAGAAAGCTCATAAGCCTCATC 13828 29 100.0 37 ............................. TATAATAGCCCCTCTTTTAAAATAAAAAACCAAGGAA 13762 29 100.0 37 ............................. ATGACTAAGTATAAAGTGGATTTAAAGCTTAGTAGCA 13696 29 100.0 37 ............................. CAGGTAATGGCGGACATGATTTCCGCTAAAATTCCAA 13630 29 100.0 36 ............................. TATAGCTTATTTTAAAATTAGTTTCAAAAAACAATT 13565 29 100.0 37 ............................. AAAGTTGAACCCATTTCTAAATGAAGCTTATATAGTT 13499 29 100.0 37 ............................. CTTAATTTAACTTCTTCACCATTTACAATAAAACTTG 13433 29 100.0 36 ............................. CAAATCCCATATATCCATTCAAGCCTAAAAATTTAT 13368 29 100.0 36 ............................. GTGCATCAAGTCATTTTTAAGAAAAGGCATTATATT 13303 29 100.0 37 ............................. TTTAAACAACAAAAAAAGGCTGTTAGGAAAATGCTCC 13237 29 100.0 36 ............................. TAATCATAGTTTGAACCTGAACGTCTAAGAGCAATA 13172 29 100.0 36 ............................. AAAGAAATAATAGAAAAAGAAACAAAAAAAACTAAA 13107 29 100.0 37 ............................. GTTGCAAGTGGAGTAGGTAATTTAGTATCTGGAGCTG 13041 29 100.0 37 ............................. AGTTTTTGCTTCTAAAACAGAAAACTTCGAGCCTAAT 12975 29 100.0 36 ............................. ATTCATGATAATTAAACAATTATTTAAAGTATTAAA 12910 29 100.0 36 ............................. GGGTAACTATATTACCTTTGTTGCTGCTAAGCTCCA 12845 29 100.0 37 ............................. CTTTCTAAATGTGCAGGATATGAAGGGATAGAGGATC 12779 29 100.0 36 ............................. TAATCATAGTTTGAACCTGAACGTCTAAGAGCAATA 12714 29 100.0 36 ............................. AAAGAAATAATAGAAAAAGAAACAAAAAAAACTAAA 12649 29 100.0 37 ............................. GTTGCAAGTGGAGTAGGTAATTTAGTATCTGGAGCTG 12583 29 100.0 37 ............................. AGTTTTTGCTTCTAAAACAGAAAACTTCGAGCCTAAT 12517 29 100.0 36 ............................. ATTCATGATAATTAAACAATTATTTAAAGTATTAAA 12452 29 100.0 36 ............................. GGGTAACTATATTACCTTTGTTGCTGCTAAGCTCCA 12387 29 100.0 37 ............................. CTTTCTAAATGTGCAGGATATGAAGGGATAGAGGATC 12321 29 100.0 36 ............................. TTGTTTCTGTTTTTGAGTTTTTTGGTTGATTTAATT 12256 29 100.0 37 ............................. ATTCTTAAATGCTCTGTATATATCGATATTTTTCCAT 12190 29 100.0 37 ............................. AGGTAAAATGCAGGCAATGAAATCAGCGATTGAGGGG 12124 29 100.0 37 ............................. GTAGAGAAGAGAATTGCTATATATATGCTTAAAGAAC 12058 29 100.0 36 ............................. AATAATACAAGGGCGAGTGATGTTGTAAGAAATAAC 11993 29 100.0 36 ............................. CTACAGGACTAATTCCCCTAATCAATAACAATACAT 11928 29 100.0 37 ............................. TTTTAGCTTTGCAAGAAGTAAGCAGAACAACAATTAA 11862 29 100.0 37 ............................. TCAAAAGTATGGTCAATTACTTGCTTATCAACATTAG 11796 29 100.0 35 ............................. CTTAGAAAAATAAGTTTTGACTTGGAGGAATTTAA 11732 29 100.0 36 ............................. TCTGTGTATGCTTGATTTAATTTTGTAGCTGTTGCC 11667 29 100.0 37 ............................. CATACGGGGCAAAAAAAATTAGTTTATGATACAAATC 11601 29 100.0 36 ............................. TTTTAAAGCTTTGCAAGAAGTAAGCAGAACAACAAT 11536 29 100.0 36 ............................. TTTTGCATCTCATCTATTAAATTCACATTATTTTTG 11471 29 100.0 37 ............................. TCCGCTAAGGCTATGAGATACTTAAACAATGATTTAG 11405 29 100.0 36 ............................. GATATGATATTCTTAAAAGTTCTATAAATTCAACTT 11340 29 100.0 37 ............................. TCTTACTTATTTAAAACTTTAGAAAATCTAATAAACA 11274 29 100.0 39 ............................. TATATGAGTAATATAAAAGTGAATTTCAAGTTTCTATGT 11206 29 100.0 36 ............................. AACATTGTGCAAGGGAGTTTTGGTTTGACCATGGAC 11141 29 100.0 36 ............................. TAAATATAAATGTAGGGAAGGAGATAAGAACTCCTA 11076 29 100.0 36 ............................. AGTAATATAGCTGATTATTTACTGGTTAAAAGAGAT 11011 29 100.0 37 ............................. TTTTTCAGGTATCTAACTAACTCAACAGTATTATCAA 10945 29 100.0 36 ............................. ACTTTTACACTTTTTTAACACTTTTTATCACTTCTC 10880 29 100.0 36 ............................. TTACTTTTACTTTTCTCATCTAAAGCTTTTATATTA 10815 29 100.0 36 ............................. TAACTTCTATAAGTTTTAACTGTTCAAATAAATCAA 10750 29 100.0 37 ............................. TTATATGCCTCATAGTGGAGAATGTGCATATAATTGT 10684 29 100.0 35 ............................. TGTTTCTGTATATTCAGGAAATAGATTAACTGCCT 10620 29 100.0 38 ............................. TAAATAATTTTTAAAATAAGAAAAGGACCTTTACGGTC 10553 29 100.0 37 ............................. GCTGAAATACTAAAAGGTAGCATACTTATTGGAACAT 10487 29 100.0 37 ............................. TTATTTCTATATAATCAAATTGATTAATAGTAAATTG 10421 29 100.0 36 ............................. GTTTCTTTGGATAATGCTCCAAAGGTTATTCCTCTT 10356 29 100.0 36 ............................. TTTACAGTTGCTACGCAACATTCTTCAACTGCTCCA 10291 29 100.0 36 ............................. ATTGCATAGCAAGGAAACACAGGATTTATTAAATCG 10226 29 100.0 37 ............................. TTTTTTATAGCATTATATATAGTGTTTTGTATAAGAG 10160 29 100.0 36 ............................. TAAAGAAAGTACCAATAAATTTATCAAATAAAGTTT 10095 29 100.0 36 ............................. GGTATAGAGAAATTAATTGATAAGTTTGGAATTGAA 10030 29 100.0 36 ............................. AAGGAATGGACCTGGTTTGAGCGTGGTATGGAATTT 9965 29 100.0 36 ............................. TAATATTGAAGGTTTTTTGCAAAGGTTTCTCTTACA 9900 29 100.0 37 ............................. CCAAAAATCATTTAAAATTAACATTCTTATAGAATTT 9834 29 100.0 37 ............................. AAGCAATAGCAACTCTTTTATTTTTTAATACTGCTAA 9768 29 100.0 36 ............................. TCCTGTGCATCATAGCTTCCTGTTTGGATTCTTCCT 9703 29 100.0 36 ............................. ACATTTTTTCTACACTTATAATCCCATTAAAATCTG 9638 29 100.0 36 ............................. AAAAGTTGTACTGTATTCATAATTTTTCTCCTTTTT 9573 29 100.0 36 ............................. TTCTAAATAAAAAAAAGAGTAGAAATTAATCTACTC 9508 29 100.0 36 ............................. TTTTCTGTAACGGATTGTACTCTTACTTCAATTTCA 9443 29 100.0 36 ............................. CAAGCTAAAAAGCTCTATAAAGAAACTAGAGTAAAA 9378 29 100.0 36 ............................. TCAGGATATATCAAAATTAAAAAAGAAGCAGATAAA 9313 29 100.0 37 ............................. ACTTTATTGAAAGTATCAAAGTAGCTATCACTTTCTA 9247 29 100.0 37 ............................. TCAATTATTTTTGTTTCCATTTTTTCTCCTTTCTAAG 9181 29 100.0 38 ............................. CATATTCAGTCCAACCAGAAACAAATCTAGGACACAGA 9114 29 100.0 37 ............................. ACGTTAGACACACTAAAAAAAATTGCAAAAGGATTAA 9048 29 100.0 36 ............................. GCTTTTAAGAAGGCATATATAAGAGCTTTCGATAAG 8983 29 100.0 36 ............................. TTAAGTCTAAATGCTTTGGCCGGCGTTAACTTAACA 8918 29 100.0 36 ............................. TTGCTCTTTTGCTCTTCTAAGAACTTTATAACACCT 8853 29 100.0 37 ............................. ACGCATAATGACACTATATACATAATACAAAGAAACA 8787 29 100.0 37 ............................. GTTGTAAAATCAAATTCTCTTTCAAAGATATCTCCTT 8721 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 81 29 100.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : TCAAATAAAGTAGTACTTAATAGAGCTTTATTATTTTGTTTTATATGGCTATGTTAAACAAAATGGTTGTTAATGTATTTATTCCTTAAAATAGGTTATAATATAAGTATACTAGTATATACTTAGGAGGAATGGATATGGCTTTGCATAAGAACTTAGAAAAACATATAAAAACTTTAAATTTAAATGAATTAGAAGAATTATTTAATATACTAAGTTCTCTTTTGATTTCTCCGATATATTCATCTGATTTCAATGAAGAAATTAAAGAAGCAAAGTATTTTAAAGGTGAGATTTGTCCTAGATGTTATGAAAATCATATTATCAAATATGGAAAAAGGTATGATAGACAGAGATTTAAGTGTAAAAAATGTGGTAAGGTATTCGATGAAAGAACATCATCCATTATTTCTAGTACAAAATTACCTCTTGATAAGTGGTTTAAATATATAACTTTATTAGTAAATAAAGCAACAATAAGAGAGTGTGCTAGTGAATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //