Array 1 5296-6909 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAY01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B1161 NODE_23_length_80663_cov_47.911163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5296 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5357 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5418 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 5479 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 5540 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 5601 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5662 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 5723 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 5784 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5845 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5906 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5967 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 6028 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 6089 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6150 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6211 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6272 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6333 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6394 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6455 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6516 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6577 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6638 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6699 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6760 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6821 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6882 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23042-23681 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAY01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B1161 NODE_23_length_80663_cov_47.911163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23042 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23103 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 23164 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 23225 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 23286 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 23347 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 23408 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 23469 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 23530 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 23591 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 23652 29 96.6 0 A............................ | A [23678] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //