Array 1 479932-481241 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMH01000001.1 Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059882 CFSAN059882_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 479932 29 100.0 32 ............................. ACTATCTCAAAACCGAAAACGACGGGATGGAA 479993 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 480054 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 480115 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 480176 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 480237 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 480298 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 480359 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 480420 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 480481 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 480542 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 480603 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 480664 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 480726 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 480787 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 480848 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 480909 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 480970 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 481031 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 481092 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 481153 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 481214 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 497498-499339 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMH01000001.1 Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059882 CFSAN059882_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 497498 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 497559 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 497621 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 497682 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 497743 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 497804 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 497865 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 497926 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 497987 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 498048 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 498109 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 498170 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 498231 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 498292 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 498353 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 498414 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 498475 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 498536 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 498597 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 498658 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 498719 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 498822 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 498883 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 498944 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 499005 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 499066 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 499127 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 499188 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 499249 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 499310 29 96.6 0 A............................ | A [499336] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGCTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTACGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //