Array 1 64557-66506 **** Predicted by CRISPRDetect 2.4 *** >NZ_POKG01000608.1 Streptococcus suis strain 1496 SS_1496_Contig608, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 64557 36 100.0 30 .................................... AAATGCTATCATAGTATTAACCTAAACGAA 64623 36 100.0 30 .................................... ATAGAAACTTTAAAATCCGAGCTTGGTACG 64689 36 100.0 30 .................................... GGACGAGAGGTATTTTACAAAATTGTCAGA 64755 36 100.0 30 .................................... AAACAATAAATTTGATTGGCAAAAGGCACA 64821 36 100.0 30 .................................... TGCTCAACCCTAGTTGTTACAGTATCCACT 64887 36 100.0 30 .................................... AGAGACTGAAGAAGCGTAATGAGTGTAGTG 64953 36 100.0 30 .................................... TAGTGCCAGAAAAAGAGTACGCTCTCTACA 65019 36 100.0 30 .................................... CTACATTTCTATTCATTTAACTGACCAAAA 65085 36 100.0 30 .................................... CGCTTTAAACGATGCATCTGTTAAAGATTT 65151 36 100.0 30 .................................... AACCGCAGAAGATTGTGGTGCCGAAGTTTG 65217 36 100.0 30 .................................... AACATACTAGCCTCACGCTGAGGGACAAAG 65283 36 100.0 30 .................................... TTTATTTGTAGAACAGATTGCATCTCATAG 65349 36 100.0 30 .................................... TGGTTTAATTAAATATTTAATGTTAGTTTA 65415 36 100.0 30 .................................... CTCTAGCAAGCTACCTGTGAAATAGCTTTC 65481 36 100.0 30 .................................... TTCTATTATCTACACACCAGAGCTAGTAGC 65547 36 100.0 30 .................................... TGGACGATTGAGAATAATGGACGCGGCACT 65613 36 100.0 30 .................................... CGCTCGTCCCGACGTTGCTTGCGATTTCTC 65679 36 100.0 30 .................................... CTCTAGCAAGCTACCTGTGAAATAGCTTTC 65745 36 100.0 30 .................................... CGCTAGGAAGAATAAGAGTTATTTTTATGA 65811 36 100.0 30 .................................... CGATAACAAAAATGGTGAAAGCAAATTGGC 65877 36 100.0 30 .................................... ATGGTTCGAATAGTCGGAGCGATACCGTCT 65943 36 100.0 30 .................................... TGCTTAATTCTCCTCCATTTTCTAACTTTT 66009 36 100.0 30 .................................... AATTACATTTTGTTTAGTATTATCATGTAA 66075 36 100.0 30 .................................... CCAATTGAGCCAAAAGCACAGTCACGTCCT 66141 36 100.0 30 .................................... CTATCACAGTTGACGTAGGCATACTGTGCT 66207 36 100.0 30 .................................... TCTACTTTAGCGGAGTGATAGACGCTATTG 66273 36 100.0 30 .................................... TAAAATTGGACCACATCTCACGACCAGTCT 66339 36 100.0 30 .................................... ATTGTTTCATTTTTTGTTTACCTCCTAGAC 66405 36 100.0 30 .................................... TGCCGGTGCATGGTAATGTATTAAAGTTAT 66471 35 88.9 0 .........................A.-.A.....G | T [66504] ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAAACAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAATTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : GCAGTAAGTTTATAAAGGAGGGGAGTAATTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATCACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTGATAGGTCTTCCTGATTAAATTCTACTTTATATCACTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //