Array 1 1-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIZD01000025.1 Actinomyces sp. 565 NODE_33_length_96102_cov_248.355499, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 96.6 31 ............................T TGAAGCCAAGATATCCCCCATCACTTGATCG 61 29 100.0 33 ............................. TCCGCTATGGGGGTGGGGTTAGGGGTGGCCCCA 123 29 96.6 32 ............................C TCCTGGCGCGCCTGAACACCGAGCACGCGCTG 184 29 96.6 32 ............................C CGCGTGGAAGCGGTGGCGTGAGGGAACGCTCG 245 29 96.6 32 ............................C AGCGCGGTGCAGTTCTTCGAGCCGCGCACCGC 306 29 100.0 32 ............................. AGCTCGGTCGCGAACGTGTGGCGCAGCTGGTG 367 29 100.0 32 ............................. CATCGCTAGAGCAGCTGTCTTGTAAACAGCCG 428 29 72.4 0 ...A...T...A.....T.C..CA..A.. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 94.8 32 GTCGACCCCGCGCGAGCGGGGATGATCCG # Left flank : | # Right flank : GCCCCCACCGACCGCCTCACTTCATCGGGGAAGCGCTCACTCCTGCCCGAACCAGTCCTCCAGGCCGTCCGGGACCCCGACCCAGGCCAGTGCCTCACCCATCTCCTCCGGTCGCAGCAGTATCCGGTGAAAGACGTCGGCAACGCGCGCACACTGCGCCTCATCCGCAATACCCGTGACAACCAGGTGGCAGCGCGGCCCCTTCCCACCGCCCTGCTTCTGCCCTAGAGCCGCGCCCTCCAGCGAATTCACTTTCACACTCAGCGCTGCATCCCAGGGCCCGGCATCCCCCACACTGACAACTCCACCGGCCACCTCCCAGGCACACACGCGCCCAGGGCGGCTGGGCAGCCAGAAGCAGCCGCGGGCAAGCAAACCATTACCGGCCAGATCGGCGACGAATTCGCGCAGCCGCCCCGGGTGGAAGGGCAGCTCGGAAAACAGGTCCAGCGTGCGCACCCCGTGCTCAATGGGTCCTCCCCACGCCCTGGTAGTGGCAG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-467 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIZD01000003.1 Actinomyces sp. 565 NODE_3_length_97451_cov_244.797897, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1 36 100.0 36 .................................... GAACCCAAGACCGAAACCCCAGAGATCAGCTGGATG 73 36 100.0 36 .................................... AATGGCGGCTTCTGATGATCGTCAGGCGGTTTTGCG 145 36 100.0 37 .................................... TCGCGACAATCTCCCAGCGGCGGCCGGTCACGTCCGT 218 36 100.0 36 .................................... CAATCAAGGCAGCCGACGAATGGGTAGACAACGCAT 290 36 100.0 35 .................................... GACGAGCCCCTATACACGCCCGCCCGCATCGATGA 361 36 100.0 35 .................................... CTGGCGCGCTGCTCATCCCACACCGCTGTGTAGGT 432 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 100.0 38 GCCTCAATGGAGCCCGGCCATGAAGGCCGGGAAGAC # Left flank : | # Right flank : CAGCTCGCGGATTTTGCCGCGGCTGGTCAAGGATTCACGCGGTCTCGCGAGCGCTGCCGCAGAAACGGGCAAGTGAATCGTGTCCGCTGGTCCGCCGACAACCAGAAAACCCTGTCATACCGCCCTTTCGAGCACTCCCCGGGGATCGGGGCAGCACCGGAGCGCTCGCTAAACAATCTGGGCCCCCTGAGTGGGCAGACCCGCGCGCCTACCGACGAACGTGAAGCGGTCCTCCCCCAGTTCGCCGAGGTCGACGATCACCACCGAGTCCTCGTCTAGGTTCATGATCTCCTCACTGTCAGCCCTTAAGTGGACCAGCTCGGTCCGGTTCAGGTCGCAGATGAACACAGAGTACTGGAGCCGTTCGCCGTTGGCCTCCATAAGCTTGCAGATCCGGCGCAGCCGCCCGGGCTTGCGGATGTCGTACGCGATGAGATATCGGCGTCGGTTCGTCCTCATCTAGTCACCATCGCCGTGTAGTCATCCAGCTCCCCCAACAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCGGCCATGAAGGCCGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.90,-15.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 2962-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIZD01000014.1 Actinomyces sp. 565 NODE_15_length_14868_cov_220.722290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2961 29 96.6 32 ............................G TGCCCAGCCGGGCGACCTGGCGTGCTTCGACT 2900 29 100.0 33 ............................. ACCCTCTCGCAGGACCGGCTTCTTGGAGCCGAC 2838 29 100.0 32 ............................. AGCCCCGTAGAGTGCTTAAACGCAAGGCCAGT 2777 29 96.6 32 ............................G CCTGAGGCGAAGTCTCTGTTCCATAAGATCGA 2716 29 100.0 32 ............................. TACTCTTGGGATAACCCGCTTAAGGAGTTTAA 2655 29 96.6 32 ............................G CGCGGCTCAGCACATAAGGTCAACGGTGGCGC 2594 29 96.6 32 ............................G GGCATCATGGTTGCTCAGGCAGTAATAGCCGT 2533 29 100.0 32 ............................. CTTGATATGCTTGTTGTTGACGGCATATCAGA 2472 29 100.0 33 ............................. GACTCTGAAATATTGAGTGAGAACTGATCTGCA 2410 29 100.0 32 ............................. GCCTGAGGAATATCGCGAACTGGCAGCGGGAT 2349 29 96.6 32 ............................T TCAAGTGGAGTCCTTTCTGGTGCGTGCCGTGA 2288 29 96.6 32 ............................G CCAATAGAGTACTCCTCAATCGTGTCGCCATA 2227 29 96.6 32 ............................T GTACCGCTCCCCTGAGCGATGACCCTTCCCTT 2166 29 100.0 33 ............................. TCGCCGCCTGTAACCATCTCCGGCGCAAGTAGC 2104 29 100.0 32 ............................. AGCACTACCGACGGCAACAGCCAGCTGGACGC 2043 29 96.6 32 ............................T CGCAAGCAGCTGGCGGCCGGCACGGACCGCCA 1982 29 96.6 32 ............................A GCATAGGCGACGTGCACGGAATCAGCACACTA 1921 29 100.0 32 ............................. GAGCTGCACCACGCCATGGTGAAGGTCACGGC 1860 29 100.0 32 ............................. GGCGTCAAGGTCAATGGCAGCGGGAACTCGAA 1799 29 100.0 33 ............................. GCCCTCGCCGCTCTCAGTATCGCAAGTCTCGAA 1737 29 96.6 32 ............................G GCGGCCTCCGCCGTGTCTACGGCGGATTCCGC 1676 29 100.0 32 ............................. CAACCTCTGTACGCGTGCCAAATTTTCCATAC 1615 29 100.0 32 ............................. AGTAATGCGGCGGGCGCGGCTCAGTTGGCCAT 1554 29 100.0 31 ............................. CCTCCTTTCGCTAGCGGTTGAGGCCTCAAAA 1494 29 100.0 32 ............................. ATATCAACCGTCTCGAAGCCAATTTCGCGGTA 1433 29 96.6 32 ............................G AATGTCTTGAACGCTACAAGGTCATCGCGGTA 1372 29 100.0 32 ............................. CGCTCCAAGGGCAACCGCTCCGCCTCGAAGGC 1311 29 100.0 32 ............................. ATATCGATTGTCTCAAAACCGATCTCACGGTA 1250 29 100.0 32 ............................. ATCCGCCCAAACTTGAACCTGCTGTAATACGT 1189 29 100.0 32 ............................. GCAAAAATCCTCTCCCGCATCGTGGCCGGTGC 1128 29 100.0 32 ............................. TACCTTGTTGCGCGAAACAGCACTCCGGCCGA 1067 29 100.0 32 ............................. ACCAACCGGCACACGCGAGAGCAGATAACAGC 1006 29 96.6 32 ............................T GAGGGTAGGGCCTTGATTACTGGCCCGAACAG 945 29 96.6 32 ............................G AGGATGTGTGTTGCATTCATCTTGCTGATCAC 884 29 96.6 32 ............................G TTATCCCCAGGGGGAAGTTATCCACAGGGGTT 823 29 100.0 32 ............................. TTGCTGTCGGCGTGGGGCTCTGAGACTGACCC 762 29 100.0 32 ............................. ACCAGCCCAGGCGCCAGCGGCTCCCAGGGCAA 701 29 96.6 32 ............................T GTGCCGCTTCCCTGAGCGATGACCTTCCCCTT 640 29 100.0 32 ............................. ACTGCTCGACAGCAGGTGCATTGAATCTGTGT 579 29 96.6 33 ............................G AATTTATTGTACAGGTACCACACGTACCCCGAG 517 29 96.6 32 ............................G CGGTAGCGAAGGACCAGGGCATTACCGACGGC 456 29 96.6 32 ............................G CGCCGCCTTCTCCGATGAATAGTTAGTAGACT 395 29 96.6 32 ............................G CTCAGAATCGTCGACGCGGACACCCTCAACAC 334 29 100.0 32 ............................. TTGTCGGTGACGGTACACTGTGGATCGAGATG 273 29 96.6 32 ............................G AGAACCAGGTCCTCCGGCTTAGCGCCGACGGG 212 29 100.0 32 ............................. TCTAATGCAACAATGACCGTTTTTGACGAAAC 151 29 96.6 32 ............................G CCTGAGGGCGGGGAAAGCGCCGATGAGGGTGA 90 29 100.0 32 ............................. GCGTCCAGCACGGCGTCCTCGGTCAGGGCGCC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 98.5 32 GTCGACCCCGCGCGAGCGGGGATGATCCC # Left flank : ACGCCGTCTAGTTGCCGGTGGCGCGAACTACTCGGAAGAGGATGCGGGCGGATGGTAGTGCTGATTCTTTCCGCCGCGCCCGCCTCTCTGCGTGGCGCTATGACGCGTTGGCTGCTCGAGGTGAGTCCGGGCGTGTTTGTCGGTCGTCTGTCAGCCCGGGTGCGTGAACAGTTGTGGGAGCTCATCAGGGCGTACATCGGCGACGGTAGGGCACTGCTCATCTGGTCCACACGCTCCGAGCAGCACTTCGAAATCGCTTCTCTAGGCCACGATCGCGACCCGGTCGATATCGAGGGCTGCATAGTGATGCGTACACCGTACCGGCAGATCGAAGGAGCCAAGTCGATTCCCGGCGCGGTGAGACCAGCCAAGGAGTCATGGTCGATCGCTGCTCGACGGCGTCGCTTCCGCAACTCGGCGGAGCGGGCACTAGGTCAGCAGTAAAGGAATCACGTGTAGAGTTTGCTGTCGTGGCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : C # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //