Array 1 4011129-4009022 **** Predicted by CRISPRDetect 2.4 *** >NC_021818.1 Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 4011128 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 4011067 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 4011006 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 4010945 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 4010884 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 4010823 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 4010762 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 4010701 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 4010640 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 4010579 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 4010518 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 4010457 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 4010396 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 4010335 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 4010274 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 4010213 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 4010152 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 4010091 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 4010030 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 4009969 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 4009908 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 4009847 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 4009783 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 4009722 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 4009661 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 4009600 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 4009539 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 4009478 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 4009417 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 4009356 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 4009295 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 4009234 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 4009173 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 4009112 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 4009051 29 93.1 0 A...........T................ | A [4009024] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4028939-4028362 **** Predicted by CRISPRDetect 2.4 *** >NC_021818.1 Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4028938 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 4028877 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 4028816 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 4028755 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 4028694 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 4028633 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 4028572 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 4028511 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 4028450 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 4028389 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //