Array 1 2765633-2765303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076407.1 Providencia rettgeri strain PreM15758 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2765632 28 100.0 32 ............................ AATTTTTATTGATAAATTGAAATCGGTATCAA 2765572 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 2765512 28 100.0 32 ............................ GATAATTGTATTGACCTAATTGCAACTGACCC 2765452 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 2765392 28 100.0 32 ............................ TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 2765332 28 78.6 0 ......T...GT......A..AG..... | AT [2765311] ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : ATATTAAATCGATTCAGGCAATACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGCTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTACCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAATTGATTGTTATCACTTATTTTTATTTTAAAGTGCATC # Right flank : CTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGATTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2774704-2774316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076407.1 Providencia rettgeri strain PreM15758 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2774703 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 2774643 28 100.0 32 ............................ GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGT 2774583 28 100.0 32 ............................ AACTTCAAATCATGCCAGCCGTTTGTATTCCA 2774523 28 100.0 32 ............................ TCGAAAGGGTTTAGTATCACACTGGGCAAGCC 2774463 28 100.0 32 ............................ TAGTTCTGCACGAAGTTGTTCAGTACGTTCGG 2774403 28 100.0 32 ............................ AACCTGAACTCTAATATATGCAGAATATTGCC 2774343 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCAATTTTGAGTCTTTCGATAAAACGAAGCGCGAGGTAGCGATGTTAGTTTACACGCTCTAATGACTGATAAACCCGCGGCCTTTAATGACTGAGCACAGGATTTCTTTTCAGCCACTACCAACCCTTTTTTGCGAAAAGCTCCTTCATCGCGTGGTTTTCAAGGCTAACTTCCGCAAAGAGCTTTTTTAGTTTCGCGTTTTCATCTTCAAGCTCTTTTAATCGTTTAACATCATTAGCTTCCATGCCACCATACTTTGATTTCCAGTTATAGTAAGTCGCGTTGCTGATCCCATTTTGGCGGCAAATATCTTCCACTTTCATGCCAGAATCAGCGAGTTTTAAAATATTAACGATTTGAGTTTCAGTAAAACGGGCTTTTTTCATTATGACCTCTGCAAATTTTAGGGCAGAAAATCTAATTATAGCTGTCTTATTTTAGGGGAAGTGGACATAGGCAGCTTAGAAAATATAGACATTACAGATTTCAAGACAGTTGTT # Right flank : GCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2777038-2775989 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076407.1 Providencia rettgeri strain PreM15758 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2777037 28 100.0 32 ............................ TGAAACAGATTCGGTAAGAATTTATTTACAAG 2776977 28 100.0 32 ............................ GTATTTTCCCACGTTACATTGTACTCCCCCGC 2776917 28 100.0 32 ............................ GTCCTTGGGAGGGCGTCACGTTCCATGCCCAG 2776857 28 100.0 32 ............................ GCATGGAAAGACCAGGAGGTTGAGGTGATAAT 2776797 28 100.0 32 ............................ GTTAAACCTAAACTCGCCAGTCCCCGTATTTT 2776737 28 100.0 32 ............................ ACCACCGTATTGGCTTGGGGCTCCTATTGAGC 2776677 28 100.0 32 ............................ GTAAGGACAGGTAAGAGGGTACGTTCTGTCAT 2776617 28 100.0 33 ............................ AATCACAAAGCTCATCATGGTGGGCTTTTTAAT 2776556 28 100.0 32 ............................ AACAAAAATAGTTCTGGTTGCCGGAGGTAACA 2776496 28 100.0 32 ............................ GTATCTCTGGAGCAGCCATTGATGCTAAACAA 2776436 28 100.0 32 ............................ TACACCTCAATATCTATCTTTGACCGTATCTC 2776376 28 100.0 32 ............................ ATATGGGGAAGAAACTACCAAGGAGACGATTC 2776316 28 100.0 32 ............................ TTGTAGATATTCGGCATATATTCATTACTTAG 2776256 28 100.0 32 ............................ ACTGAAATTATCAACTGTAATGTTATATGGAT 2776196 28 100.0 32 ............................ TGTAATTTTCGTTGCTGTTGAATAATACACGT 2776136 28 100.0 32 ............................ GTTCCAATTATCAACAAAACCACCTGCTTGAT 2776076 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 2776016 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCGATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACAAATTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTCAAAGACTTAAATAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTCATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTAATCTATTTTTGTTATA # Right flank : GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGTGTTCACTGCCGTATAGGTGTCCACTCCCCATTAATTGAGACACATTAAATTAGAGTTTTCTAACTGTTTACGATAGGCCTCCGGTGGGAGGTGATTTAAACTTTCGTGAGTTCGATTTTGGTTATAATCTTGTAGCCAAAACCATGCTAATTCTCGAACTTGGCTTAACGATTCAAATAAATACGCATTTAAAAATTCACGACGGAACGAACCATTAAAACGTTCGATAAATCCGTTTTGTTGTGGTTTTCCTGGTTGAATATGGCACAGCAAAATTTGGTTATCTTCACAATAATTCAATAAGTTAACTGAAATGAGTTCAGGTCCATTATCGACTCGGATCTGTTTTGGCAATCCTCTTTCGGCTTTTAAACGTTCAAGCACCCTGATAACACGTTCAGCCGGTAATGACGTATCAACCTCAATCGCCAAGCATTCTCGCGTTCCTTCATCAATAATATTGAGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //