Array 1 18262-16767 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAN01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2751 NODE_2_length_115868_cov_1.48924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18261 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 18200 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 18139 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 18078 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 18017 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 17956 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 17895 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 17834 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 17773 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 17712 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 17651 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 17589 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 17528 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 17467 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 17406 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 17345 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 17284 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 17223 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 17162 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 17101 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 17040 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 16979 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 16918 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 16857 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 16796 29 96.6 0 ............T................ | A [16769] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34789-33540 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAN01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2751 NODE_2_length_115868_cov_1.48924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34788 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 34727 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 34666 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 34605 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 34544 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 34483 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 34422 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 34361 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 34300 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 34239 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 34178 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 34117 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 34056 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 33995 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 33934 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 33872 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 33811 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 33750 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 33689 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 33628 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 33567 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //