Array 1 145174-144752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYF010000003.1 Listeria booriae strain UTK_C1-0001-E1 NODE_3_length_461506_cov_50.727204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 145173 30 96.7 35 ............T................. CAGTAACAGAGAATGAAACAGATGTTATCGAATTT 145108 30 100.0 36 .............................. AAGAAGAAAAAATCTGGGTTTGCGAAACAAATCGAA 145042 30 100.0 35 .............................. TCTCTTTAACTTATACCCTTATTATACATGTTCGA 144977 30 100.0 36 .............................. ACCTTTATTTTGAAAACGGCGAAAGGGTTCCAGGCT 144911 30 100.0 34 .............................. TTGACCTTGAAAAACGGTTTTACAGCACAAAATG 144847 30 90.0 36 .................A........G.G. AAGGACAAAGGCCAAACGGTACATTTTACAAACCCG 144781 30 73.3 0 .......C.C.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 94.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGCCCTCCAGTAGTGCAAAATAATGGGGAAATCGACAGATTTTTCTTAAGCGATGGTGTGATTGGGTTTAAGGCTATTTTTGAAGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : CTGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGTAGCGAGTAAGCTCTAATTTCTAGCTCTCATAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTTTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTGTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAGATAGCAGCGATCTCTCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 254732-255229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYF010000003.1 Listeria booriae strain UTK_C1-0001-E1 NODE_3_length_461506_cov_50.727204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 254732 36 100.0 30 .................................... TAGGTGGAGTCGCTTATATTCGATGTGCAG 254798 36 100.0 30 .................................... ACAAAGGATAATACTATTTTTTATCAATAG 254864 36 100.0 30 .................................... ATTATACAGTAGAATACAGGGCGAGCGACA 254930 36 100.0 30 .................................... ATGATCCAAGAATGCGCGGAGAACAAGCGT 254996 36 100.0 30 .................................... TTAAGTAACAAGCGCTATGTAAAGATTTAT 255062 36 100.0 30 .................................... TCGTGATAGATATGAGTGTCAATTATGCCG 255128 36 100.0 30 .................................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 255194 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ATCAGAATACTGTACAGATATCCCCATATCAAATATCTCCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCGTCTTGAAGTGTGATAGGTAACGCTTTGCTACCATCTTTCTTCAATAAACGTATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAACAGGTTACATCACTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCACAGTAGAG # Right flank : CTTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTACTGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATTGTTTCCTACCTCTTTCTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 111679-113279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYF010000002.1 Listeria booriae strain UTK_C1-0001-E1 NODE_2_length_569340_cov_45.968220, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 111679 30 100.0 36 .............................. TATTGTGTTGCAGCGATAAACGGAAGCGTGATACAA 111745 30 100.0 35 .............................. ACAACACAAAGTATTTCAACTGGTACTAAAAAATC 111810 30 100.0 35 .............................. TTCCATGATGTAATTGCTCCAGTATCTGGATGACA 111875 30 100.0 36 .............................. CTAGAAGGCTCGCTAACAACATCAACAGGTGAATCA 111941 30 100.0 36 .............................. TCTGTTACTTTAGAAAATGTTATTTCTAAATCATCT 112007 30 100.0 36 .............................. AACCAAAATTTCCACTCACTAATTAATTTTACTCAC 112073 30 100.0 34 .............................. AAATCGTGCTAGCATGAAACGTGATGAACTCAGA 112137 30 100.0 35 .............................. TCAGATGCAAATATGCAGTACTCCAACATTTCATA 112202 30 100.0 36 .............................. TCTAGCTAGCTCCTGTACATTTACTTGATAATCCTT 112268 30 100.0 36 .............................. TTTAGAGCGCGTCTCTAGTGGATAAGGCGGATCAGC 112334 30 100.0 35 .............................. ACGACGGCTGGATTTAGTGATAGTAAACAGGTAAT 112399 30 100.0 35 .............................. CTAGAGGACTGTGTTATACGTCTTCAATACAACAT 112464 30 100.0 36 .............................. GTTTTCTGCTAAGATAATCCGTTGCAGTCTTGCTGT 112530 30 100.0 34 .............................. TTTCTTGCATCTGAATGTCTGCGACACACACTTC 112594 30 96.7 37 .............T................ CACTTCGCTATTTGTTGTTTTTTCGTAATGTACTCTC 112661 30 96.7 36 .............T................ AAAAAAGGCATGGGCGTACGTAATCGAGTCGAAGTT 112727 30 96.7 37 .............T................ CGAAAATTAATTCGGGGGTCTTCTCATGTTTATAAGC 112794 30 96.7 36 .............T................ GAATATAACGGTCTGAAAGCTGGAATCATTGTAGAT 112860 30 96.7 37 .............T................ TTGAGGCGGCATTATCGGGCGACGTCAAACCTGTAAC 112927 30 96.7 36 .............T................ AGATTTCTGCAGTTGCAGAAGCAGCTGGACAACTTG 112993 29 80.0 30 .............T.....-....CG..TC GTCATTGTCCAGATCGTTGACTTCCGTTGC 113052 30 96.7 36 .............T................ AAGTTTTGGCGATTCCCCCGAGATTCCGTATACGCC 113118 30 96.7 35 .............T................ TTATGATGCTCGGGCACGCAGGTTACTGGATTGAT 113183 30 100.0 36 .............................. TTTTCAAAAGTTGCTTGAGTGCCTAGCTTCGGATTA 113249 30 90.0 0 ........T....T...A............ | T [113265] ========== ====== ====== ====== ============================== ===================================== ================== 25 30 97.7 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TCAAACAGATGTGGCATGGGCGGAGTTTGAAAGATGGTTTTTATCTAATATGAATCTAGACTAGATGGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGTCTCAGGTCGATGTGCTTATTACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 128123-129734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYF010000009.1 Listeria booriae strain UTK_C1-0001-E1 NODE_9_length_181445_cov_46.635614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 128123 30 100.0 36 .............................. ATCTTAAACAACAAACGGCTAAACTGGATGTTATTG 128189 30 100.0 34 .............................. ACCTCCATTTATATCACCCCTCAAAGTGATTATA 128253 30 100.0 37 .............................. AAGAAAACGAAGAAGACAAGTTTCAATTGAAACAAGA 128320 30 100.0 36 .............................. ATTTGAAATGAGGGGGTTTTATTGTTTATTGTATTA 128386 30 100.0 36 .............................. ATGCTTAGCTGTTCTTACTTTTCGTAAGTGGTTATA 128452 30 100.0 36 .............................. ACTGTATACACGACAAAGAGCGATGACATCCATTAC 128518 30 100.0 36 .............................. AAGAACATCCCGGTGTAGTGATAACTTTTCGTCCAC 128584 30 100.0 35 .............................. TCCTAAGTGAAAAGCGATGGGTTGAAATGGAAAAC 128649 30 100.0 36 .............................. TTGATTTGACGTGCAAAATCAACAATCGAGAGATTA 128715 30 100.0 36 .............................. AAAAATAAACCAGCTCAGCTAAAAGCGCACTTGGTT 128781 30 100.0 35 .............................. TTACGTTTTAGAATGTCCGCAGCTAGTTCGATACA 128846 30 100.0 35 .............................. CCGTGCCCGAATCGGCAGACTTCATTTATCTCAGC 128911 30 96.7 36 ....G......................... ACATATGAACCAGAAATTTGGCAATTACCAGTTATC 128977 30 100.0 36 .............................. TTTTTATACTTCCCTGTCAATGATTTTTCGGCAGCT 129043 30 100.0 36 .............................. CAAAATTAGGAGATGCTTGGCTACTTGGAAAACATC 129109 30 100.0 36 .............................. AGGAAAAGCAATAGTTCCACAACGGTATCGTTAGGA 129175 30 100.0 35 .............................. AAGGCTGAATCTATTCAATAATAAAATTAGTTTTA 129240 30 100.0 37 .............................. CCGTGTATGTACGGAATCATCTCCTTGCACGAATAAG 129307 30 100.0 36 .............................. ATGTCTATTGCTATATCGGTGATTTTATTTTTAAAA 129373 30 100.0 36 .............................. ATTGCTGAACTAGATTCAACGTTGATTGCAATGTAT 129439 30 96.7 36 ....G......................... CAGATAACGTCGACACTTCCGATAGATCGAATAGTG 129505 30 100.0 38 .............................. GTTATAAAAGAAGTTGCTCCAACTGTGCTTAAAGTTGC 129573 30 93.3 36 A................A............ TAGTGTGTCCAGCCAAATCTCCCGGGCACGTATGTG 129639 30 93.3 36 ....................A.....C... GGAGCAGTTGCATTTGATGAAGAACATGCCTATGAA 129705 30 90.0 0 ........................A...TC | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 98.8 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTGATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGAGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAAGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGTGAGGAACAAAATGACTATGGAAAAATTAATACTACGAGTCACCGTAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 21338-15630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYF010000005.1 Listeria booriae strain UTK_C1-0001-E1 NODE_5_length_269080_cov_58.232942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 21337 36 100.0 30 .................................... GAAACTGGCTGTGTTTTTATGCGGCATTCT 21271 36 100.0 30 .................................... ATGCTATAATAATCTTGTCTCATCCCGATT 21205 36 100.0 30 .................................... CATGTTTAGTACTTGGTTTCCTGATCGTGC 21139 36 100.0 30 .................................... CTGATAATGCAGTTACTTACTCGTCTAATA 21073 36 100.0 29 .................................... ACAAGCCCATTAGAAAAGCTTTCAATCAT 21008 36 100.0 30 .................................... TGTGAAGAACATGCAGTTTAGTTATAGCCG 20942 36 100.0 30 .................................... TTCTGGATGATGTTAATCCGAAATTGGATA 20876 36 100.0 32 .................................... TTAACCTTGACGCATTCGGTAATTCAGCTAAA 20808 36 100.0 30 .................................... TTGAAATTGCAGACAGACTCCTCACTGAAA 20742 36 100.0 30 .................................... AGCCATCACCCACACATCACACTCACCCTT 20676 36 100.0 30 .................................... GTGTTGCGGTTCCAGTAATCGTGGCTATTG 20610 36 100.0 30 .................................... TTGTGGCGACGAGATTATTGCAGACGACGA 20544 36 100.0 30 .................................... TGCCCGAAGTGGTGCGCCGCATGACGCCGC 20478 36 100.0 30 .................................... CTGTAACGGAAAGCAAGTAGAAAATAGCAA 20412 36 100.0 30 .................................... TTAAACTAAAACATATAACAGCGAAACCCA 20346 36 100.0 30 .................................... ATGACCGAGTTCTTGGAGCCATATATGCAA 20280 36 100.0 30 .................................... AGCAGATTCACAACATCCAGACTCGACACA 20214 36 100.0 31 .................................... TTTGGCAAGTAAACGTTTTTGTTCGGGGTCG 20147 36 100.0 30 .................................... ATATGCCCGTTTTCTTAGAGACGTCTGTAT 20081 36 100.0 30 .................................... ATGGCGTAAAAGGCTATATTGCAACCAGTA 20015 36 100.0 30 .................................... TTCTTACAATGAAATTAAGTGAGTTCCTAA 19949 36 100.0 30 .................................... ATAAGGTTTTCCATCGTGATTCTTTCAACG 19883 36 100.0 30 .................................... ATGTATGATGTCATGTTGAAGGATGTTCCT 19817 36 100.0 30 .................................... TGGCAAGAGAGTTTACCGTCGCCCTTCCTG 19751 36 100.0 30 .................................... ACAAAGAGAATGAAAAAGATTTTAGCTTTA 19685 36 100.0 30 .................................... GAATAAAGTCAGTAGGAGGAAATGCAACTA 19619 36 100.0 30 .................................... ATTAAAAGGTGGTAATATTAATGGAAATGA 19553 36 100.0 30 .................................... TATATGCAGAGGATAACCCTAGCATCCTGT 19487 36 100.0 30 .................................... TTGCAATACTTTAATTCTCGAGGTGGTGGA 19421 36 100.0 30 .................................... TATCTGGGGCTATACTAGATACCCCTTTCA 19355 36 100.0 30 .................................... TATCTTAGCTAATGTGTCTCGTAAAGCTTG 19289 36 100.0 30 .................................... GGATGAGTTCATTGAAGCATTTAAAGACGG 19223 36 100.0 30 .................................... GACATGTACAAACTAGGACGTGTTAATACT 19157 36 100.0 30 .................................... GAACATCGACACAACGGCTAATGCAACTTT 19091 36 100.0 30 .................................... CTCTCTCATGTCCGATCGCTTCAACTGATA 19025 36 100.0 30 .................................... GGTGGAATTGGACAAGGTATTGCCGACCAA 18959 36 100.0 30 .................................... AAACTCAAGCAGTCCAGCATAAATTTGTCT 18893 36 100.0 30 .................................... CAAAAGAGAAGAAAGCAATGACAACCCTTG 18827 36 100.0 30 .................................... GGGACAAGGCGTTGAGTGCTAGACTGACAA 18761 36 100.0 30 .................................... GGACAAGGCGTTGAGTGCTAGACTGACAAA 18695 36 100.0 30 .................................... ACCGCTATACCTATACTGGTTATTGCCATT 18629 36 100.0 30 .................................... AGTAGTTGAGATTCCTGTCTCGTTAGATAT 18563 36 100.0 30 .................................... CAGTCATGTTGAGGACGTTCCACAAACGAT 18497 36 100.0 30 .................................... GAACGACTGTCAGAAATGCGTCAGCGGCTT 18431 36 100.0 30 .................................... ACGATATGTTGCACGGCTTACGACCTTTTG 18365 36 100.0 30 .................................... AAAAACACCAGTTATAAACCCATTAACACA 18299 36 100.0 30 .................................... TTGAAATAGGAGGAAATACGATGAAAACAA 18233 36 100.0 30 .................................... TGAGGTCTAGTGACTTGTACGAATGGTCTG 18167 36 100.0 30 .................................... GATCCGTGCAGCTAATATAGCAGCCAAAGA 18101 36 100.0 30 .................................... AAGCTTATAAAGAAGAAGTAGCAGCCAATG 18035 36 100.0 29 .................................... ATAAAATAGGTACAGCGACGGTTGAAGGT 17970 36 100.0 30 .................................... TTACCCCAGTTAGGTTCTGTCCACCGTTGT 17904 36 100.0 30 .................................... AAATTCCCGTCCCAGTTTTCAAACTGTTCA 17838 36 100.0 30 .................................... CGCATTTCTAAAACGATTACAGCCTACCAC 17772 36 97.2 30 ........G........................... GCACTCTGGTGTTTTTGTCTCATGCTCAGG 17706 36 100.0 30 .................................... ATAATGATGATTCGTGGTTGGCGTTTATCA 17640 36 100.0 30 .................................... AGGATGCACAAGTCCTTTACAACATCATTG 17574 36 100.0 30 .................................... TTGTCGTTCGTTTCCCCTATCTTCTCCGAA 17508 36 100.0 30 .................................... ACTGATCGAATAAGATGCTTTTGTCTGTCA 17442 36 100.0 30 .................................... AATACGAAGCACTGCTTGCTAGAGAAGCAA 17376 36 100.0 30 .................................... AAGAAAGTGATTACAGTGCAGAAGAAATGT 17310 36 100.0 30 .................................... TTCCCAAGCGTTCAATATCAATTGCAACTT 17244 36 100.0 30 .................................... ATGGTGAGGCTCTATGAATGCACAAGAAGT 17178 36 100.0 29 .................................... AGCTTCGATAGCTTACACCGGGAAGGTTG 17113 36 100.0 30 .................................... AATTTTCATCAATTATTAATTACTATTACT 17047 36 100.0 29 .................................... ATCAAAATACAGTTAACAGGTCGAGATAG 16982 36 100.0 30 .................................... TGACTACAGGAAGAGAGTTAAGCCCATACT 16916 36 100.0 29 .................................... AAAATTAGAAAGCACTATCACAAAAAATG 16851 36 100.0 30 .................................... TAATAAATTTATATAACATAAATGTAACTT 16785 36 100.0 29 .................................... TGTTAAAGGAGATTGCTATGGAAAGATGG 16720 36 100.0 30 .................................... TTGAAGGAATGTAAACGACGAGCGGAGCAA 16654 36 100.0 29 .................................... AAAAAGTGGAAGATGAATGGGAAGAAGTG 16589 36 100.0 30 .................................... GAAGGTGATAGCGAATGGAACATATAACCA 16523 36 100.0 30 .................................... GCAAGGTTAAGCGCTCCTAACAAGCCACCG 16457 36 100.0 30 .................................... TAGCCTAAACGCTGAACGCATCTTTTTACG 16391 36 100.0 30 .................................... TGATGAACAGTCACTGATTATGAAAGATAT 16325 36 100.0 30 .................................... AAACCGATACAAATACACTCGTATCTTGGG 16259 36 100.0 30 .................................... GACTGCCTTTTCCACCCAAACTTTTTTCTC 16193 36 100.0 30 .................................... CAGAAAAAGAACAAATACATCAATTCATGA 16127 36 100.0 30 .................................... ATGAGCTGATAGATTGGGATGGTACTTTAT 16061 36 100.0 30 .................................... CTGCAAACAGAAGCTTTTGCATCAAATACA 15995 36 100.0 30 .................................... TCAGAGTTTACCGCGTGACTGAAACGGGCG 15929 36 100.0 30 .................................... TTCCTTTATCCAAATGATTGCTGGGGTTAA 15863 36 100.0 30 .................................... AATTTGAATCGACATTATATTATATTCTTG 15797 36 100.0 29 .................................... CAACGCCGAAAGGGTTTTTGTTCTCGATT 15732 36 100.0 30 .................................... ATATATTACGTCATAGCGTATAATATGGTT 15666 36 75.0 0 ...................C...AAA.G.C...CCA | C [15633] ========== ====== ====== ====== ==================================== ================================ ================== 87 36 99.7 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACTCTTGTTTTTGTGGAGGGATTTAGGTATGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATATTACGGGAAATGGCTAGAAAAGGTATGCATGTTATTGTACTTGACGATAATTTGGTAGGTGCCTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAGCTCTGAAGACTTTCTACAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCCGAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATATTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : TTGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTGGACACGGTCATTTACATGAGGATTCGGGATTTAGCCGATGCAACCCATGTTAGCACAACGACGATTTTACGATTTTGCAGGAAATTTGGGTGCAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACCAAAATAAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTAAAACGCACAGCTCAGCCTGAATTCAAGGCGAATATTGCTCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATCGCTGAATATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //