Array 1 2385-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTP01000515.1 Treponema pedis isoE1186 segment514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2384 36 100.0 29 .................................... TGTTTTAACAAAAATAAGAGAGCTTATAG 2319 36 100.0 30 .................................... AAGCGGTTCTTTTTTTTATACACCCTACGG 2253 36 100.0 30 .................................... CCGAAGCTCCGACAACCCCGCCGGTGTGCG 2187 36 100.0 30 .................................... AATCGCTTCCGAAAATGTGAAAGCTGTTGT 2121 36 100.0 30 .................................... TAGGCTCCCATCGAGGCAAGGTGCCAGTCT 2055 36 100.0 30 .................................... CTCAGGATATACATCTTCTAATGCTGATTC 1989 36 100.0 30 .................................... AAATTCTTGTCAAGGATTCTATAGGGGATA 1923 36 100.0 30 .................................... GAGAAGCAAAAATGAAAATAGAAAAAATCG 1857 36 100.0 30 .................................... TAAGTGGTCGTCATCATAAGTAAGCGTAAC 1791 36 100.0 30 .................................... GTTAGATTGTTGTGGAGCATCGGTATTACT 1725 36 100.0 30 .................................... AACCGTTTTTTCAGGCTATTAAAAACGGGA 1659 36 100.0 30 .................................... TCATTTTCTGCTTTGAGCTTTTCAGAATCT 1593 36 100.0 30 .................................... CCACGCTGTCTGTATGGCAAAGCCGTAGTA 1527 36 100.0 30 .................................... GAGTCAGAAACATAGCCGGGAAGGCCTAAG 1461 36 100.0 30 .................................... AAGGAAGGTATAAATAATGGTATTGTTATA 1395 36 100.0 30 .................................... TGTTGAAGATTTGGAAGGTTTTCCTTTTAA 1329 36 100.0 30 .................................... AAATTTTCATCAAGAATTCTATATGGCACA 1263 36 100.0 31 .................................... CCACGCTGCCTATAAGGCAGTGCAGTCGTAA 1196 36 100.0 30 .................................... AGCCTTTTTTAAAACCGATTAAGGAGCGCG 1130 36 100.0 30 .................................... TCGCGGAGCCATTGCCGGTTGATACCTCCG 1064 36 100.0 29 .................................... CGCATGGAAAGGTGCCCTTATCGGGCACC 999 36 100.0 30 .................................... TGCAAAACCGTCCGGAACATACATCGGGCA 933 36 100.0 30 .................................... TTAAGAATTCCATTAATGAAGGTGAAGCGA 867 36 100.0 30 .................................... TTGTCCTCTTCGGTCATACCTTCAAAAACA 801 36 100.0 30 .................................... CCTATTGCCTGCGATATGGATATTGAAGAT 735 36 100.0 31 .................................... TTATTAAATTCTTATGCACGGTGTATCCGGA 668 36 100.0 30 .................................... TAATTGCCGCCAAAGATTGGGGGCCGACAG 602 36 100.0 30 .................................... ATTTATATCTTATAGTACTATAGCAGAAGA 536 36 100.0 30 .................................... ACAAGGGATTAACACACTGCCGAAAGTGTA 470 36 100.0 30 .................................... TTTAATTGTATACAACCGGCACGGTCGCAA 404 36 100.0 30 .................................... TTACCTGTTGCAGTAATTCCAAAAGGAGGA 338 36 100.0 30 .................................... CGGCTATCAAGGTAGGTACGATGAGATGAG 272 36 100.0 30 .................................... TGGGTTCCCATCGAGGGAGCGTGCCTGTTT 206 36 100.0 30 .................................... TAAGTTTTTTGTCGAAGATAAATCGGCGTG 140 36 100.0 30 .................................... GTTCAACTTGGCTACATGACCTGGGGTAAA 74 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : GATATAATGACTGCACGAAAAGGACGAGGTATTCAG # Right flank : TCCGATATTTTCGGAAAACGAACCGTAACAGGTTGTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1579-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTP01000329.1 Treponema pedis isoE1186 segment328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1578 36 100.0 30 .................................... GTTCAACTTGGCTACATGACCTGGGGTAAA 1512 36 100.0 30 .................................... CCGATATTTTCGGAAAACGAACCGTAACAG 1446 36 100.0 30 .................................... AAAAAGTTGTTTTTGCCGCCGAACTTGAAA 1380 36 100.0 29 .................................... GTTTATTGTTTTAATACATAAATCTATCG 1315 36 100.0 30 .................................... CAAGTCCATTGAATGACGCTACAAGCATAA 1249 36 100.0 30 .................................... CCGTATCGTCGCAGGAACAAAATGCGTTTG 1183 36 100.0 31 .................................... CCGATCCTGCACTGCTGTGGCTGTGGCTGTG 1116 36 100.0 30 .................................... TGGACAAATAGGAGAATGCTTCTGCTTGCA 1050 36 100.0 29 .................................... TTCTACAGAATGTATGAACAAAGTATTAA 985 36 100.0 30 .................................... TCTATAATCCGCCAAAGCTCCACCTTGCGG 919 36 100.0 30 .................................... TAGTTCAAATAGTTCAAGCAGTCGCTAAAT 853 36 100.0 30 .................................... CCTTGACTTCGGTATTTTCCGTGCTACTTA 787 36 100.0 30 .................................... TACTGCTCCATCTGATTGAAAGGTTACTTG 721 36 100.0 30 .................................... TTTACCGGTTACCTTATGTTTATACGTAAT 655 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TATAATTAAGTTTTTTGTCGAAGATAAATCGGCGT # Right flank : AGTGAATGGTGTAAACCTATACCCAATATACATTTACTCGCTTTTTAACACAAAAAAACAGGCTTTTTGATGATGATTTTTTTCAAAAAGTCTGTTTTTTTAAAAAAATTCAAGTTGGGAAGGTGTTTTTTTCTTTTTTTCAGGGGTTTTTCCGATAAATGATTCTATTTCACCGAACTGTTTGTCGGTAAAACGGAGAATACTTACCTTTCCTTCACGCGGAATATGCTTTTTAATATACTTTACATGCACAGCGCAGGCCTCCGCACTTCCGCAGTGCCGGTAGTATACACTGAATTGCATCATAGAAAACCCGTCTTCTATGAGCTGCTGGCGGAATTTTGAAGCTCTATGACGTTGCTCTTTGGTATTTGTCGGTAAATCAAACAGGCAGATAATCCACATAATCTTATACGCATTAAATCTTGTATGCTCCATAGTTAGAATTCCGGCAACTGTAGTTTTTCCGTTTTCCCCGTAAGTATTTGAGCAAAGGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //