Array 1 83408-84107 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEQ01000013.1 Escherichia coli strain 86-H105-A entry13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83408 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 83469 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 83530 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 83591 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 83652 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 83713 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 83774 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 83835 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 83896 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 83957 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 84018 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 84079 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : GCCTCTCAATTTGTAACGTCTGCAATGTCAGGCGAGTTCCCCGCGCCAGCGGGGATAAACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGCGGGGATAACCATTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCCACATTCCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109491-111044 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEQ01000013.1 Escherichia coli strain 86-H105-A entry13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109491 29 100.0 32 ............................. CAGGCCGCGCAAAAATCTTCCGTTCTGCAATC 109552 29 100.0 32 ............................. TCTCGCGGTTTACGGGCGACCCCGCGTTACTA 109613 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 109674 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 109735 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 109796 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 109857 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 109918 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 109979 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 110040 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 110101 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 110162 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 110223 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 110284 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 110345 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 110406 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 110467 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 110528 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 110589 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 110650 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 110711 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 110772 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 110833 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 110894 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 110955 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 111016 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGTTAATTGAGGAAGTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //