Array 1 76471-76611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000002.1 Nostoc sp. FACHB-973 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================= ================== 76471 28 100.0 28 ............................ TTGGTGCGATCGCAGTACTGAGAAGATG 76527 28 96.4 29 ..............G............. ATTGGTGCGATCGCAATATCCTAAATACT 76584 28 96.4 0 ...............G............ | ========== ====== ====== ====== ============================ ============================= ================== 3 28 97.6 29 GCGATCGCATTTTTTTAGAGAATATTTT # Left flank : AAGGTACATATCGCCAAAAAACAACACCAGTAGGCAGTTTTCCGCCCAACGCCTTTGGTTTATACGATATGCATGGCAATGTTTGGGAGTGGTGTCAAGACCATTACCATGATAATTACAATGGCGCACCAACAGATGGCAGGGCGTGGGTCAGTGATAATCAAGATTACAGGCTACTGCGGGGCGGTTCCTGGTTCCTCGATCCTAATTACTGCCGTTCCGCGTCCCGCGACGTCAACCTTCCTTGGGCGGGGCGCGCCGACTCCGTCAACGGTATTGGTTTTCGTGTTGTCTGCGCTATCGGGAGGATTCTTCAGTAGCCCTTTTCTCTTTTCCCCTGTTCCCCTTTACACTTCTTCACTTTTCCCTCTTCCGCCTTCGGCGGAAAAATTTTTTTAATTTTGGGTGTGGTGGTTAAATTCGTTAAAATATGAATTTTTTAGGAAAAATATCTTGATGCGATCGCTTTTATATTGTCCGATCGCAATATCCTAAATACT # Right flank : TTCGTGCGATCGCCATCAAGCAGCTTTATTAACAGTTGGTTTTGGAAGTTCTTCACCCGTGGCTTCGTAAGCCATAATTAAAGATTCTAAAGCTTCAATTCCATTTGTTACAGCTTCCTCATAACTATCACCATGAGTTCTCCAAAGCTGTCCAGGAAAATCAGGAAATCCCACCAAAAAACAATTATCTTCTTCAGACCATTGAATCAGCATTTGATACTTAAATTTGCTCATCTTCTTGCTTCTGTTGTTGTTGTCTTTCTTCTACTTCCTTTATAGCCTGCTGAACATCTTTTTCTTGATAGGGTTTAGCATCCGAACCATCTTTACCAGAAATAGTTAATTTTCCACTGTATAAAGGATGAATCCAGTTGGTATGACTACCTTTACCTGGGAGTTCAGTAAAATCTAGTTTACGTAGCATCTGTTTTAACTCCCTGATTTTTCTCGGCATTTTTCAGGTTTTGGTTATTATTCATGGCAGATTAACATGAGCCATC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGATCGCATTTTTTTAGAGAATATTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 126278-129524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000001.1 Nostoc sp. FACHB-973 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 126278 37 100.0 37 ..................................... GCCGCCAAAGAGGTAGAGAAGTCCATCGCCGAAAAGA 126352 37 100.0 36 ..................................... TCCCAATACAGTTGCTACAGTAAGACAGCGCTTCAA 126425 37 100.0 35 ..................................... TTAGTCCTTAGTTAGCGGTAAACGCGGTAGGGATG 126497 37 100.0 36 ..................................... AAATGTTGCATGTGGCGCAAGTACACGAGAAATTAC 126570 37 100.0 37 ..................................... ATCTGCAATAGCGGTTCCCAATGCAAGTATCGTTAGG 126644 37 100.0 39 ..................................... TGATACATCTAAGCTAGCAGGGTAGCTCCTGACAGTTGA 126720 37 100.0 33 ..................................... TTAATCTGCTTTGTCGCCCTTCCTAGCTACCAC 126790 37 100.0 34 ..................................... ATGATACTTATGACCACATGATGGTCTGGCATCA 126861 37 100.0 34 ..................................... ATAATACCCTATCGATCTTATCTCCCCTACCACC 126932 37 100.0 35 ..................................... TAATAGATCGAGATAACCCTAACTTCTGAGCTTGA 127004 37 100.0 34 ..................................... CATTAGAGTGCATCGATTTTGACCTATAGTGTGT 127075 37 100.0 36 ..................................... AGCCTTGACAATGCCAGTGGCAGTGGCGATATCGCC 127148 37 100.0 35 ..................................... TTTGGTGACCTACGGACTGCGGTAGACATAATCAC 127220 37 100.0 35 ..................................... TTGCAAGATCGTATGCTGATTGAGTCGCCAATAGA 127292 37 100.0 34 ..................................... GTAAGCAATTGATTTGGAGCTACAGCATTTTATA 127363 37 100.0 34 ..................................... GCGTTGATGTAATACGGCAGTCCCGTCGCCGCTG 127434 37 100.0 36 ..................................... TCTTTGGGGCAAGAAATCAGAGGATTTGAAAGAGGA 127507 37 100.0 36 ..................................... AATTGGTAACCCAGCCCATAGTACTTGTGACATCAA 127580 37 100.0 34 ..................................... AGATTTCTTTGCACAAAATTCAAACTGACCTGAA 127651 37 100.0 34 ..................................... GATTTTTTACGAGGAACTGGAAGCTGCAATCTTC 127722 37 100.0 37 ..................................... ATAATGCCTTAAATGCTAATATCTCATACTGAGGTGT 127796 37 100.0 36 ..................................... TGGCTGACCACCGGGAACTGATTGATTACCAGATTG 127869 37 100.0 40 ..................................... GAAAATATGCACTCAGCGGTAGCTAGGAAGGGCGACAAAG 127946 37 100.0 39 ..................................... GCATCCCTTCAAGTTAAATTCCCTCAGGTAAAGCTGGTT 128022 37 100.0 37 ..................................... ATAGAATACGACGTGCATCTTCAGGGGTGTAGTCGTA 128096 37 100.0 39 ..................................... CCACTGTCCTTCGCCCTTGCGAGATTTGAGTGCAGCAAC 128172 37 100.0 37 ..................................... ATATAAGGAATGCTGTCTATTTACTAGAACAACAGGA 128246 37 100.0 33 ..................................... ATGCTACAAAGCTTACGTAAGACTGCATTCGAG 128316 37 100.0 41 ..................................... AGTGCCTATCGACTTTAGCGCTGTCGTCACGAAGGGCATGA 128394 37 100.0 38 ..................................... GCAACTGTAGCGCCGAACAATGAATCAAGAGGTTTTAG 128469 37 100.0 38 ..................................... GCGTAAACTGATTAGTAACAGTATTAGCACCAATATCA 128544 37 100.0 35 ..................................... GTAATTTACTTAATAATTGCTGGGGAATTCTATTC 128616 37 100.0 35 ..................................... ATTCCTTGCTTTATTCTGCTATTTATCAATCTTTG 128688 37 100.0 36 ..................................... AAACTGTACATCTGGTGTGAGTTTGCAATAGATACC 128761 37 100.0 36 ..................................... ATAACGCCTTGAATGCCAATATGTCAAACTGAGGTG 128834 37 100.0 33 ..................................... AAAGTCCACTTACCAGCGCCACCAGTTCCACAG 128904 37 100.0 34 ..................................... GAGTTTTTGTTTATCCTGCCATACAAAATAGGGG 128975 37 100.0 35 ..................................... TGCGTAACATACTACCCTAATTTCATCCCAGGCTA 129047 37 100.0 37 ..................................... GCTGAAGCCGTTCGCCGTTGGCTCTAATCAGTCCTAA 129121 37 100.0 35 ..................................... GCTGAATTTGCCCTAACTGTTGGTCGTGGAGGGAG 129193 37 100.0 36 ..................................... ATATAAAACCCCTAACTTAGGACGTTTATTGTTTTA 129266 37 100.0 35 ..................................... CAAAAGAAGCGCTACCACTAGCATCCTTACCATTA 129338 37 100.0 39 ..................................... ATACTTGTAGCAAATTTGTCGATTTCATTAGAGTTTTTA 129414 37 100.0 37 ..................................... AGGTATTATGAACCTTATAAAAGGTTTATCTTATATC 129488 37 97.3 0 ................A.................... | ========== ====== ====== ====== ===================================== ========================================= ================== 45 37 99.9 36 ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Left flank : CAGGAGCAGTACCTTGGACAGCAACTCAGGCACTCAATAATAGTACATTACCTTATGTTGTGCAGTTGGCGAATTTGGGAATTAAGGCATTGGAAGTTAACCCAGCCTTAGCTAAAGGTGTGAATGTGCAGAATCATAAATTAGTGCATCCTGCCGTGCAAGAAGTGTTCCCTGATTTGGTAAGTTAGAGGTTATACAGGCGAGGGTTAGAAGGTGCGATCGCTTATTTTAATGGTGGTAGCCCTCAGCAATTAGACTAATTTCGTTGCCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAAACAAGCAAAAAATGTCTGCATCTCAATGTGTACAAGGTTTTGAGGACTATAGGACTTTTAAACCATCCGCGCACCTTACGGAGACTGGGTTTCAGCGATTTGCATCTTGTGTAAATACCATTTGCTGTGTTATGATTCTTTCATCCGCGCAACTGCACCTTGAAAACCGAATACAGCAAGCCTTTCTGGTGTCGGCG # Right flank : CTTGTAAATCGGCTTCAATATTTATGAAGAACTACAAAAATTATTAAGATAGTTATAAAGTTCACGAAATAAAGGGCATTTTCGTTGAACTTCAGATAGATTGAGATACGCTAATAGCTCAGGTGTATGCAATCCTTTAGAAAAGCGCGTTGAACTGCTATCAAATTCATCTAGAACACTTGAATCGATTAGCGCTTGTGATAGTTTTTCTTGACAACAATCTCTTTCAAGATTGTACTCACTAAAGGATTCTGGATTATCAAAAGGAATATTGATTTGCGTACTCAGCCACCAACGCATACGCTGATGTCTACCTCTGAAGTCGGGATGTTGAGCTACTGAGTTATTCCAATCTGCGATAATCCAAGCTTCGAGTTCGGGAGCAGCAAACCCAATAAATATTGGAATATCAGAATATGCTGATATCGCTGACAATATTCTTTCTCTTTCCCGTATCGGATCGCGGCAATCTAAATCATCAAAAACTAAAATTAAATCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 207764-208880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000001.1 Nostoc sp. FACHB-973 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 207764 25 100.0 47 ......................... GAGATTTTTGTGATTTGAATAACTGTTTCTGAACTTCTTTCCGATCA 207836 25 100.0 50 ......................... CCTTCCCTTAAAATACCGTTTGTACCTTCATCGCCAGGACTTTCCGATCA 207911 25 100.0 43 ......................... GAATCCTTTGAGTCTTTTTGCTCAATAATTGTCTTTCCGATCA 207979 25 100.0 49 ......................... ATCTGAAGCAAGCTCGGTAATCTCAATTTCAAGATTACTTTCCGATCAC 208052 25 100.0 48 ......................... TCTTCTTCTAAGCCTACATTCATAGCAAACTGTCCATTACTTTCCGAT 208127 25 100.0 48 ......................... CTAACCTAAGTCAGGGTTTTCGTCAATTTCGACTGAACTTTCCGACCA 208200 25 100.0 49 ......................... TCCCGTAGCCAGCCCAAGCCCCCAGCTCTTATCATCACTTTCCGACCAC 208273 25 100.0 49 ......................... TACAGACACTCTCTTTGAGTGATTCAGGCACGTAGCACTTTCCGACCAC 208346 25 100.0 44 ......................... GCTAGCAGTGTCTACAATAACGCCTGAAGGAGTCTTTCCGACCA 208415 25 100.0 50 ......................... CCTGTTTCTGTTTGCCTTACATCAACATTGTGCCTGTATCTTTCCGACCA 208490 25 100.0 50 ......................... AAATTTGCAGAACTTACCGCCCTTCCAGCAGGGGATAAACTTTACGATCG 208565 25 100.0 48 ......................... GCTTCTAGTATTACGGGATGGTTATGCCCCAGTTCATCTTTACGATCG 208638 25 100.0 46 ......................... ATTAGATCGGATTCGACAGCTTGAAGGTGATTCATCTTTATGATCG 208709 25 100.0 47 ......................... CTGCTTGAATACCCACAGCAGTAACAAGCGAGTCATCTTTACGATCG 208781 25 96.0 50 ..........C.............. GGATATGGTTAGAAGTGTACATCAGGTCTATACCCTGGGCTTTCCACTTA 208856 25 92.0 0 .C........C.............. | ========== ====== ====== ====== ========================= ================================================== ================== 16 25 99.2 48 CATCGCCCCGAAAGGGGATGGAAAC # Left flank : TAAAATAACAAATGCTGTCGCCGAAATAACAAATGCTGTCGCTAAAATAACAAATGCTGTCGCCGAAATAACAAATGCTGTCGCTAAAATAACAAATGCTGTCGCCGAAATAACAAATGCTGTCGCCAAAATAACAAATGCTGTCGCCAAAATAACAAATCTACTCACCAAAATTTAGCTCTTGACTCAAACCCTTTTAATTACGAATTACGAATTACGAATTATGTTCAAAGAGGTACTCTTCTGTATCAAAAACTTGACAAGCACACATAACACATTTTATTGTTTAACGATGTGTTGAAACTCATCGACGCATCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTGACATGCGTCGATGCCTTGTGCAGTAAGGCTTTCAGGCTACAAAATTGACGAATTTTTGAAGATTTTTTGTCTTCATCAAGAGATGCGTCGATTAGGGGGTCTGAAACCCGCTCGTAGTAAGGTTTCCAAAAGTGAACTCTTTCCGATCA # Right flank : CATAAAAGCAATCCCAGGCTTTCCCTAACGGGGATGAAAACGTTATAGAAACATGATTAATTGACTACTGTGCGTAATACGACGCTTGCCGAAGATGACTGCAAAGCACTACCCTGGAAAACTTAAGCAGTTAGCATTTTGGACAAATGAAAAATTGTTTAAAACTTACCTTTGACAGCGGACAAACAGCATTAGCTATTCGAGTTAATCAGCAAGCAGAATTGCCAAATACTCTAAAGCAAATAGGACTTAGTGATTCACGTCCTGTTTTAGTAGTGGTGGGGGGTGCAAGTAACATCAGTGAAGCCGACTTTCTCCGCATTCAACGGTTGTTTGTAGAAATTTTAGCCCCCATCGCCGAAACTTTGGGCGCTTATGTCGTCGATGGAGGTACGGATGTAGGAGTTATGCGATTAATGGGCGTGGCCCGTACCCAAATAGGTGCTAAGTTTGCTTTGGTTGGTGTGGCGCCTGAAGGGAAAGTGGCTTTACCCAATGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 125755-126008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000003.1 Nostoc sp. FACHB-973 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 125755 38 100.0 34 ...................................... TAGCGATCCGGATTTTGTAGTTGACGCAGATGAA 125827 38 100.0 34 ...................................... GCGAACACCGCGCCTTATCTGATTGCCAAGCAGT 125899 38 100.0 34 ...................................... ATGTTTGATCTAAACAGCGTCTATAACTCCCAAG 125971 38 92.1 0 T.................A..................C | ========== ====== ====== ====== ====================================== ================================== ================== 4 38 98.0 34 GGTTTCCAAAGCCCTCTCGTTAGGTGGTGGGTTGAAAG # Left flank : ACTCTACCTGTGCGATCATCTAAGTGTTTGTAAGCAGTAATTGCTTGGGTAAGCTAATACTGCTGTTAGATGAGAAAGTACTCGCACCGAGACGCATGGGAAGTATAAGGTGTTAGGGTTCCAAACAACCCAGAACCTTGCTCTTGACATCAAACTCTTTTAGCTTGGTGTTAGGTGCCAGAGCGGCCTGTACTACTGAAATCTTAGATTTTGGTTTTACGAGGAGGATCATTACCTCTTACTTTACAACAAAGTAAGGGTACGGGTATACCGTCACGGTGGCTACCGAACTACCACCCCCTAATTTTGATTTTTGGCAAGCCAAAGCGGGGGCAAAATCCCTGGGGTGCTGCCAAATGCTCAAAACTCCTGTCTGCACTGGGTATTACTATTTTAGTCATGAAGAAAATTTTATTCATTGACTGTAGAAAATAGGAATTAAAGGAGGCTTGTCAATTTTGCCTTCAGAAGCCCTTGTTGGCAAGAGTTTTCACGGGTGC # Right flank : CTTCTGATCACCGAAGTAGGCGCTTTTGTTATATAATTTTGCATTAGGGTGGTTTAAAAGGAGCGCTGCGATCGCACGTAAGACGCAGCTATTTTATAGTAGTGAATAGTATTGATGCCTCTGCTTGAGTGAAAACAAGAAAAGAAGAGTTAATATATTTTTGTAATTAGACTGCAAATAAAGCGCTTTAAAGCTAGTATTGCAATTCAAGAGCCTTGCGCTTGCTGTAATCTATTGAATTAGAAAACATATATTTGTCCGAGTTTTACAGCGTGATTTTGGACAATAATTCTTTAAAACTGGTTTCAACTCTGGACAATAATTCTTTAAAACTGGTTTAATTGCTGAAAGCCCCGGAAATGCGTAACTTATGTCCCTGAATTTCGTAAAACTGGACAATAATTCTTTAAAAGTGACAATAATTATTTAATGGACATATGGAGAATAGGGAACTCGAATCCCTGACCTCTGCGGTGCGATCGCAGCGCTCTACCAACTGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCAAAGCCCTCTCGTTAGGTGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 36081-35896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000063.1 Nostoc sp. FACHB-973 contig63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 36080 37 100.0 35 ..................................... TCTGGATGGGTTTTAGATGTGCGCTCCTCCTTGTA 36008 37 100.0 39 ..................................... TCCTCAAGGCATCATCAGCAGAGGGAGCATAACTGATGC 35932 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 100.0 38 CTTTCAACCCGCCTCTCGCTGGGAGGGGTGTTGAAAC # Left flank : TCACCTCCACTTTGAAGTGCGCCGTAATGGTTCACCCGTCAATCCCACTGATTATCTTTAATCCGAGAGCAAATGCGATCGCAGCCGTGCTATAATCTAGGAGAATAAGGGCGCGTGGCTCAGTGGATAGAGCAACAGATTCCGGTTCTGTGGGTCGGGGGTTCAAATCCCTCCGCGCTCGTTTAATGTCCGTGTGCCAAATTATTTGTCCGCGTTGACAGATTAATGTCCGTGTGCCAAATTATTGTCCGCGTTGACAAATTGTATGTCATTACAACACCCTGCCATACATACAGTATGGCAGAACTCTTCTTTTGTTATAGGGTAATTAATCAGTTTCAATATTAGAGCTAAAATCAAGCTCTTCAAACAAAGAATCTGTTGCTCTATCCTTTCAACCCACCTAAAAAGTGTTTGCTATGAACACTGGAAAAATTCCAAAACTCAATAAAGCTTTTAATGTACTAGGACATACCCATTGACAGCAAAAGTCGTAGCGA # Right flank : CCTGCGCTCCAAACCCTTGATTTGCCAAAAGTTCTGAATGCATTTTTGGCAAGTCTCCCAAAATCGCTTGTCTGTTAACACTTAAAAAAGTAAATTAACTGACACCAGAAAAGCTACAAGCCTTAATCAATAAGCGATTTGAAGTTTTGGCAGATCCCCAGGGAAATTGACCCCGCTTCGATTCGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTCGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTATCCACAAGGGACAGCAGCATCAAGGTGGGCAGCTACTAGGGTCAGAAAGCAAGACTGTTTAACAGCAGTCAAACTAACCCACATTTACGCAGCACAGAGACTTGTAACAAGCATGAACTGCGGCGCTATTGAATATTTTCATTCTATTGTCAAGGTTCGGCGTTTTGTCAATCAGTTTATTTTGCGGGAATGATAAGCTGCGATCGCTAATT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCTCGCTGGGAGGGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 31403-30476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000081.1 Nostoc sp. FACHB-973 contig81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 31402 37 100.0 41 ..................................... GTACACCTGATGGTTCCTTGGACATTCCCCGGCATCTCCGA 31324 37 100.0 35 ..................................... GCTTTGAAAGCCGTATCTGGTAGTAGATACCTGTC 31252 37 100.0 34 ..................................... GCAACCTCTCTTAATGGTTTCGATTTATTGGAAT 31181 37 100.0 34 ..................................... GCGAAAAATCAAGATTAGGTGCAGTGATTGATTT 31110 37 100.0 35 ..................................... TTCCAACCTACCCAATTAAGAGATGAATAAAACAC 31038 37 100.0 36 ..................................... AGGTAATGTCTCTGTAATAATTGCTTTTTGAGTAAT 30965 37 100.0 38 ..................................... AAAACAGCCACCACTCACCTCAATCTAAATATACCAAA 30890 37 100.0 35 ..................................... GCCAACGCCCTGCGGCGGATAAAAAAGGAGAATCC 30818 37 100.0 35 ..................................... ATTCACAAAAGTTACTGCAATTTCTCCCTCTGTCC 30746 37 100.0 37 ..................................... ATTAACACACAACTAATATTCAGAAGAGTAAAACAAA 30672 37 100.0 36 ..................................... AACAGAGGACATAACGACATAACCCAAGTGAACAGG 30599 37 100.0 49 ..................................... ATTCAGGATTGAAACCGAATTTACCAGCAGTACGTGCTAGATTATATGG 30513 37 94.6 0 ...............C....................T | A [30478] ========== ====== ====== ====== ===================================== ================================================= ================== 13 37 99.6 37 GTGACAATTACCTTATTAGGTGATTGAGGATTGAAAC # Left flank : AAGTCTGTTACCCAGCGTGATTTAGAACTATTCTGGGAAGCATTAATCAAGGCTTGGGAATTTGATCGCTCCTCTTCACGTGGATTCATGGCTTGTCGTGGGCTTTACGTCTTTACTCACGCTGCTAAATATGGTAATGCCCCTGTCCATCAGCTTTTTGATAAACTGCAAATAGAAGCAAATACTGATGTATCTCGCAGTTTTTCTGATTACACCATAGAAGTAGACGGTAATGACTTACCAGATGGGGTGACATTAACTAGACTAGCTTGAAATGCGCGAATGGGTGGGTGTTAAAACGAATTAACTATGAGTAAGCTTGAAACTCTTGTATGGTCTATCTTCAGGCAATCGGCGTACTCCAACTACCCGCGCACCTTACCTGGTAAGGGTTTGAGCATTTTAGCTGTTTGCTCTATCTACTGGAATGAGATATCGTCTAGGCATCCGCGCAAACTCTTATGTAGATCTTGTATTTTCAAAGAGTTTGAAGCACCGTT # Right flank : GAAAAAAGTCGTCGTTGGTCTTTCTGGTGGTGTTGACAGTTCCACCGCCGCTGCTATCCTGCACCATCAGGGTTATGAAGTAATTGGTTTGACTCTTTGGCTGATGAAAGGCAAAGGTCAATGTTGCTCTGAAGGTATGATCGACGCGGCTGGTATCTGTGAACAACTGGGCATTCCCCACGAGGTTGTGGATATTCGGGATGTCTTCCAAACAAATATTGTCGATTTCTTGGTGACTGGTTACAGCGCTGGGATCACGCCTTTGCCTTGCTCTCAGTGCAATAAAACGGTGAAGTTTGGCCCAATGGTGCAGTATGCCCGCGAACAATTGGGATGCGATCGCATTGCCACTGGTCATTATGCCCGAATTAACTATGACGAAGCTACTGGGCGTTACCAATTATTACGGGCTGTTGACCGCAACAAAGACCAGTCTTATTTTCTCTATGATTTGTCTCAAGATTTGCTAGAGGCGAGTGTATTTCCTTTGGGCGAATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACCTTATTAGGTGATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 4009-2307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000089.1 Nostoc sp. FACHB-973 contig89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4008 37 100.0 34 ..................................... AACGACACTAGCAATGTCCCTGAACTGCTTGTAC 3937 37 100.0 34 ..................................... TTGGATTTCGGGTGATGGCATGGGGTGAAACTGT 3866 37 100.0 34 ..................................... GCACAATCTGGAGTAGGTAACGCTGCAAGACGGC 3795 37 100.0 35 ..................................... ATAATCGATGCTGAGATAGCCTTAGATAAGCTGAA 3723 37 100.0 34 ..................................... TACTGCAAGTATGGCAGGATGTTTGCAATCAGCT 3652 37 100.0 42 ..................................... GAACGTGTTGATGTGCAGTGCTTCCCGTTCGATGGTGAAGTG 3573 37 100.0 33 ..................................... AGATACATTCGCTTCCACATACTGCTTTTTATT 3503 37 100.0 40 ..................................... TGGCAATAAAATCTTTGATGACATCAGCGGTTGTGCATTG 3426 37 100.0 33 ..................................... TTCCCATTCTGCCTCAGTGATACGCAATGTTAA 3356 37 100.0 34 ..................................... GGTTTTATACAAAACAGCCCAAGAAACCACAGAA 3285 37 100.0 35 ..................................... GTTATAGTTAGACTCCATTCTGTCTTGAATGGATT 3213 37 100.0 37 ..................................... ATTTATATCACTAGCATCAAACACAGAACCAGGGAAA 3139 37 100.0 36 ..................................... GTCAAGATTGAATTGCGAAGCGGTTTATTTTTTCCG 3066 37 100.0 41 ..................................... TTCATCCCATTCGGGTACATGATTATGAATAGCTTTATATG 2988 37 100.0 34 ..................................... GTGAAAATTGATAAGTTACTAGTCTTTCCTAGCA 2917 37 100.0 36 ..................................... CGTTTGTTCTCAAAGGATTAATCGTTGCCGTTTTTC 2844 37 100.0 35 ..................................... TCAAAATCAGATCCGCAGTACTCTATATTATTTAG 2772 37 100.0 34 ..................................... AAGAGCTTCAACGGTGGCTTGGGCAGTATCAATT 2701 37 100.0 36 ..................................... CATAGTTTTTATACTCCAATTCAAACACTGCCATCT 2628 37 100.0 35 ..................................... AGCATTCCCGCCCTGAGTGCCTTGAAAAAATGGGA 2556 37 100.0 35 ..................................... GTAATCACCGCAGATAGCGATCCTTTTTCCGTGTT 2484 37 100.0 35 ..................................... GAGAGTTGGCTACACTGTTTTCTTTCAGAGATTTA 2412 37 100.0 32 ..................................... GCGGTCTTGACACCACCTCACAAAATCTTGAG 2343 37 83.8 0 ...........................A.G...TTTG | ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 99.3 35 ATTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : GCGTAGCCCATTCTGACTCCTGAATTCTCAATTCTGCTGTATTTTTTGTGCGCCTGCTATTTTGGTAAAGTAGAATTTATGAGTGGTGAACCAGTGCGCTACGACTCTATTAGGACTAGCTTTTTCAAGGTGACCAACGAACATACGTTGTTTTGGTGCTAGCATCTTGAATCATCCGCTCACATTTTGGGCTTTTTGAAGATTGAAATAACCAATCTTCGTTCCAAATTTCACCACCTTGAAAAGGCTAGTCCTGTCTATTTTCTTTGCCAAATGCGCGGATGGGTAGGTGTTAAAAATAAGATTTGGGGAAACAAGCTTCAAAGTAGGCTGTAGCAAGAGTTTTGCGATAAATAGTTGTGAAAGTACCCGCGCACCTTACACAGACTGGGTTTTGGCTATTTTATTAATTCCTAATCTCAATTTTTCATGTTATGATTAGACCATCCGCGCTACAGAACCTTGAAAACCAAATACAGACTGTGTTTGCGGCTACCGCG # Right flank : AAAAGTAGTTAGCTGTGATTTTAGGCACCTGTTGATCCCCCCTAACCCCCCTTAAAAAGGGGGGGAACCGGAATTAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTAAAACGTTTTGTTACCGAGAAGAGGACTTTTCAAACAACCTCTTAGGAATTGAAACATGGGAAGCGATAACAAAGAAGAAATCAAAGAAAATTTTACGGACAACTGAAATCTTCTATGTAGAGCTTTCGTCCTACAGACCACTTGCTATCTGGAACTTTTAAAAAATCAAACCATGTCTGTTGACCACCCCCAGGATAGCAGCTTGGAGGGTTTTGAGGAGCAGCTTTACCTAGATAAACAGTGGTTCCTGCTGGCAAAGTTACTCTTTCTATAAGAGTAGCTTTATTACCCCATACTTGATTAAGAGCTAGATTTCTGATTGCTTGTAAATTTGTTTCATATTTGTCAGTTGTCACAAATCTACCTATCTTTTGAGTATCGTCACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 17200-16942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000092.1 Nostoc sp. FACHB-973 contig92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 17199 36 100.0 39 .................................... GATGCGATCACTACTGAAAATCCAAGGGCGGGAAGAGAG 17124 36 100.0 39 .................................... GGCAGTATATTAATGAAGGAGAAGTTTAGTTAAAATATG 17049 36 100.0 36 .................................... GATATTTCAGAGTTCCCAGAAGATTTACAAATTAGG 16977 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 38 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAA # Left flank : ATCTGGGTTAGTTTGACAGTTGGAAGACTGTTATGCTTTCTGACCCTGGTAACTGCCCGCTCTTGATGCTGCTGTCTAGCTTAACTAGACAGGATATGCCTTTTTTTGTAACTTGGATAAACCAATTATTTTCCGACCTGTTCAGCGACGAAAAAAGAAGTTTATACAAGGATAGCAAAATAGGGACAGGTGCGCTCCCAGCAATAAAGAGTAAGGCTTTTTGCCCTAGCCGTTTTCGTAACGGTGCGGTTTACCGCAGTGGTGGTTACTGAATCACCCTCTTCGTCGGGGGAACCCTCTCAAATATTTTTTGGCAAGGGAAAGCGTGGGCAAAATCCCTGGACTCCCGCCAAAAACTGAAAACCCTTGTCCAGCAGTAAATTCAGAAATCAGACTGTCAGTTAATTTAGTTTTTGAATTTTCAGTTGGACATGCTTCAAAGCAGACCTGACAAAAGTGTTTGTGGACAGCTTGCAAAACAAGGATACTAGACGGGTCGA # Right flank : AAATTTTTCATCATTACAACTTTATTTAAGAGGGTTGAAAGGCGCACTTCGTTCGGGATTATCCTGAATATTTGCAGTTAAACCACGTCCATTTTGAAAACTGGAGGTTTTTAAACAGCCTGTTGATATATAGCCCTTGGTATATAAACTTTTCAAGCAATATTGCAAACACCACAGGTTTGAACCTGGATGAAGTTTATATTAGACTTTGGGGAAGCTTGATTTTGAACCAGCCCCAAAAAAGACAGTCGGCGACATTAATTTGTTAACGGTTACAAAAGCAACTTCGATGACATTAATTTGTTAACAGCGATATTCATTCGTTAATCACGACATTAATTTGTTAACGACGACAAATAATTAGTTATTCGACAACACAAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGCCATAAAAACGGCACTATAAAACCAAAATATCACAACCCGTGGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 12966-12277 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000093.1 Nostoc sp. FACHB-973 contig93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 12965 35 100.0 38 ................................... TTTTGAAAGAATTGTTTTGCCTATGTTTTTAGTTTCAT 12892 35 100.0 37 ................................... CAGCTCCTTTACGGAGTCTTGGCGTTCTTCCTCATCG 12820 35 100.0 36 ................................... TTGAAACTCCGACCGTTGGGAACAGCCGGACTACAT 12749 35 100.0 39 ................................... CCATTCCCCTCTGGGTAAACGTAATTATTTTGGTACTGG 12675 35 100.0 37 ................................... TGCTGTGTCGCATCACCTTCTGTCGGGTAATGCGTGT 12603 35 100.0 39 ................................... CCTTTCGACTTGACTTTGATGTCGTTGCCGTAGACAGCA 12529 35 100.0 37 ................................... CCTGGGTAACCTTAAGCCTAACTCAAACCACCCTTGA 12457 35 100.0 39 ................................... CTGATGGGATTTTTCCTTCAAATCTTAATTTTTGAATCA 12383 35 100.0 36 ................................... TTGCCAACGTTTCTCCAAGCTGGCTTGCATCACCCT 12312 35 91.4 0 ...........................T..TT... | C [12284] ========== ====== ====== ====== =================================== ======================================= ================== 10 35 99.1 38 GTTTTCAAATCACTTCCCCTAACGGGGATTGAAAC # Left flank : TTTTCCGCAAGTAAAACAAGCTTTGACTTTCTCAAAATGCCATTTGACTTACTCAAATCCCAGTTTGCTTTCTCATTTTGGTGTTTTCCGCAAGTAAAACAAGCTTTGACTTTCTCAAAATGCCATTTGACTTACTCAAATCCCAGTTTGCTTTCTCATTTCGTTATATTAAGTTTGCGGTCTAGAGTGTGAAAAGTCCAAAGTACTTTGTTATACTTTGTGGCAGCATAACAGAACCTTGAAAACTTAATATCACGTTTCCAAGCGAAAGTAAAAGTATGTCTTTTTACTTAATATACGCAAATTTTTAGCGGGGGTAGAGCGATCGCCAAAACCCTGATTCTTCCGTTGACCCCCGCGAAAAGCTTGCTGGGTAAGAGTTTGAGAAGGGTCTACTAGTCTGAATTCTCAATAAATCTAGCTTATTGACAGGTAAATTAGACCCCCCGCTAAAATGAAGCCTTCAAACCCAGTCATAGTAATAGTTCTACAAGGGTAGG # Right flank : TAGGTCGATGTCAAAAGTAGAGATTGGAGTAATCCCAATACGGTTCAGATAAGCCTTTTTTTCTCCCCCTGCATCCCCTGTATCCCCTGCTCCCCCTGCCTACCTCAACCGATAAATTTCCTTAACTGAACCGTATTGGGAGTAATCCAGCTTTAATCCCCCAGTGGGTGTAAGATACCACAAGAAGCGAATGCTGCTATGTCGAAATTTAAGGCATCAGACGCGATAAATCGCCGTCTCTACAAAGAATTGATTGTTGTAGAGACGGCGATTTATCGCGTCTTTGCGTCTTTGTGATTGTGATTTGGTTTAAACTCCAGAATAATACAAATCAATTTTGCGGCATGATATCAGCATCACTTGATAGTCACAATAGTTACTGCAAGATTCTATGAGTAATGCATCTCGGTTATCCCTAAACTCTAACCCACAAACTGCAACTTCTCCTTTGCGGTTACTTGTATTAAGTAACGGACATGGGGAAGATATAATTGCAGTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAAATCACTTCCCCTAACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 11966-9952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000095.1 Nostoc sp. FACHB-973 contig95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 11965 37 100.0 33 ..................................... CATCTTCAATACCTATGTCCCACGTTGATTGTT 11895 37 100.0 35 ..................................... AAACTCTCTGCCACGGAAAGGTGTATCCTTCTGCT 11823 37 100.0 35 ..................................... TAGTGTCCACCGCTGTGTGCATCGAAGAACTCGCT 11751 37 100.0 34 ..................................... CTAAAGTCAGGTTTAACGGAAATGTTTGTCTACT 11680 37 100.0 37 ..................................... GTATCCCCTGTTAAGCCTGTAGTTTCAGAATAATTTC 11606 37 100.0 39 ..................................... TTTATCTTGATGTAGCTTCATGATTCAAATACCACAGAT 11530 37 100.0 37 ..................................... TCATAAATTTTATCTATCTTCCGTAGGCTACCCTGAA 11456 37 100.0 34 ..................................... TATCCTACTAACAATAGCCATATAGGTTCTTCAT 11385 37 100.0 40 ..................................... TTGTGATATCCCAGTATTTTCATAGCATCATGCCAATTGC 11308 37 100.0 34 ..................................... CTGCTTTTTTGCATACCCAAGCCATACCCAAGCA 11237 37 100.0 34 ..................................... CCGTCTGAAAAATTTCTAGAATACTTGTCCGGTA 11166 37 100.0 38 ..................................... AGATACATAATCCTAGTTTGTGGTTATTGACACATCAG 11091 37 100.0 35 ..................................... CCATTGGATATAAAAAATCTCCTACCAAAATGTAA 11019 37 100.0 34 ..................................... ATTTTATCCACCATTTCAAAGCCACTAGAATAGA 10948 37 100.0 34 ..................................... CGGCACCAACAACTAAACCACCAACAATAATAGG 10877 37 100.0 33 ..................................... ACAAGGAGAATTGGTAATTTATTCAGCCGATCA 10807 37 100.0 34 ..................................... CGGGAGGGGCAGTAGCCGTTGACCCCGCGAAGGT 10736 37 100.0 35 ..................................... TTGAATTGTATTAATTACAGTCCCATTTGTTTGAG 10664 37 100.0 34 ..................................... ACTTAGAAATACATTCTTTGTTAATCGTCAGCAA 10593 37 100.0 41 ..................................... GCGCTGGTGATCTTTACAGCGATTATGTGGCTATCAAGCAG 10515 37 100.0 33 ..................................... TTCAATTGAAGACGTGGAGCGTCAATCTTAGAA 10445 37 100.0 38 ..................................... TGTACTAGGCAGTTGGTATCCTCCCCCGCGTCTCCGAT 10370 37 100.0 36 ..................................... TATCCCCCATTAACCATTAGTGCCCCTAGCTACAGC 10297 37 100.0 44 ..................................... CTCTTAGCTTCTTTTTATCAGTGGGAACTTTTAGCAAGCCTTTC 10216 37 100.0 38 ..................................... CTGTGCCCTGTGTATGGCATATGCATACTTGTCGTAAG 10141 37 100.0 35 ..................................... TAGCAGTATCGGGACGATTTTCTCGCCGATGATGA 10069 37 100.0 44 ..................................... TGAAGGCGGGTTCGCAGTTACCGACGCCGAACGGTTGTAAGCGC 9988 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 28 37 100.0 36 ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CAGGACATAGCGGAACTACTGAACGCATCCTTCAAAATCTACACGAATTCTTAGAGCGATCGCTCGGACACCCTTATACTTTAAAGGTGATTGATGTTTTAACTCATCCAGAACAAGCAGAAATTAATCAGGTTTCTGCTACTCCTACTCTTGTTAAGGTTTGGCCTCACCCAATTCGCCGAATCGTTGGAGAGTTGGATCATGTAGAAAAAATTTTACAGATGTTGGCTACCAAGGAAACATTTTAAGTTTTATCAGGATTTCTTTGCTAAGTGCGCGGATGGGTAGGTGTTTATGAGCGGGTGACTACAAAAATGGCTCAATTGCCCTCTGTGTAAGAACTTCAAGCCAGTAGTGTCTTTAAATCATCCGCGCTCCTTACTGAGCTTAGCTTTCAGCGATTTGTATCTAGTAAAATCACAAGTTCTTGTGTTATGATTTTCCCATCCGCGCAACAGAACCTTGAAAACCAAATATCACAGTACTTTCAGGCGACAGCC # Right flank : GACAAAAAAATATTCTCTAATGGCAAACAAAAAACTCGCGATCGCATTTTTCAGGTTAATTTAATGTGTGAAGGATGCGATCGCGAGTCACAAAAAGTAGTTATCTAGGGGCTTGAAGAATTACTACTGGCCACTGCCTCGTTTAAAACTAACTCTGGTTGTGGTGTTTCCTCTTCTTCTTCTGGCAAGCCGTAAATTGACCTGTACAATTTCACGTACTGCTTAGCAGATTGATACCAGCTAAAGTCTTCACTCATACCCCGTTTTTGTAGTTCTTGCCATTGGGGTTTGAAACGGAAGCCTTCCCAAGCCCGAATCATACAGGTGAAAAGGTCTAGCGGTTCGTAGCGATCAAAGCAGTAACCGGTGCCTGCTGCATTTTCGGGGTCGTGGTGTGTTACGGTGTCAACTAATCCACCTGTGCGGCGGACAATGGGCACGGAACCATAACGCAAGGCCATCATTTGGCTAATACCGCAAGGTTCAAAGCGGCTAGGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 3940-2588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSJ010000143.1 Nostoc sp. FACHB-973 contig143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 3939 37 97.3 37 ....................................A AGCGTGCTAACAGGGATGCAATTACCTCCGGTAACAC 3865 37 97.3 39 ....................................A TCTAGCGCTAACTTGTAAGCGATCGCTGTTTTATCCGTC 3789 37 97.3 35 ....................................A TTGCGCCCTTCCCGCTTACTTCTCTGTTCAAGATA 3717 37 97.3 34 ....................................A TTTTCCAGGGATTTCAGCTTTTCAGTTGGTTGTA 3646 37 100.0 45 ..................................... GCGGACTTGTCCATCAAGGCGATTTACTCCTGTAGGGAGCGCTGC 3564 37 100.0 33 ..................................... TGATAGCTGAGAATCCTTTTGCTCATCTGAGTA 3494 37 100.0 40 ..................................... TACAAGCATATCAGCTTTCTTTAGAAAGGATGCTTGCAAA 3417 37 100.0 36 ..................................... CAGGTAATACAGCATCCCTTTTATTGACTTTAGTTA 3344 37 100.0 35 ..................................... GTCGCAATTGCAAGCACAAATCAAAAACGGGATGC 3272 37 100.0 38 ..................................... TCAGTACTAGTGGAACTCTAACAGGTAGTAATTATTGG 3197 37 100.0 34 ..................................... AAATGGCTGAAACAGGACTACGACAAGTAAAGCT 3126 37 100.0 35 ..................................... AGTGCAAAGCCATCCAGCAATAAAACAATTCATAG 3054 37 100.0 34 ..................................... TGACACATAAAGAGGATATAAGACTAACCTTTGA 2983 37 100.0 36 ..................................... TGACAGCCTTGAGACGTTCCCGCGCTTACCATTTGA 2910 37 100.0 35 ..................................... TACAAGATTCCAAGTAGCTACCATTTTCTTAATTC 2838 37 100.0 35 ..................................... TAGCTGTTTCAGTTGGTCGATGTGCCAGGGTAAGC 2766 37 100.0 35 ..................................... GCTTGAGACAGCACCGCTAGGAGCAGCATTAGCAG 2694 37 100.0 33 ..................................... CATCTGCCATACTGCACCTCAATCTTGAAGTAC 2624 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 99.4 36 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCAGAAGATAAACGTCGCACCAAAATTCACAAAGTTCTCAAGTCCTATGGACAGTGGGTACAGTTCAGTGTATTTGAATGCCATCTCACCGATACTCAGTACGCAAAATTGCGATCGCGCTTGAACAAGTTAATCAAGCCGGAAACCGATAGTATCCTCTTTTACTTTATATGTGCGTGCTGTCTAAGTAAAGTTGAACGTATTGGTGGGGAAAAAATTCGTGATGACAGTATTTTTTTTGCTGAATGCGCGGATGGGTAGGTGTTCAAAACGAAATTGGAGGAAGTAACCTTCAAATTCGCCTGGTGCAAGAGTTTTGGGAAAAATAGCTAAGAAAGTACCCGCGCACCTTACACAGACTACGTTCTAGCTATTTTCCTCAAACCCAATGTCAATTTCACATGCTATCATTACTGCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACTGTGTTTCAGGCTACCGCA # Right flank : ACTGAGATTCATGATGTCGAATTTGAATTAGACGCGATAAATCGCCGTCTCTACAAAAAATTGATTATTGTAGAGACGGCGATTTATCGCGTCTCTTGCCTTAACCGGATCGCGTCTCTTGCCTTAACCGGATTGCAAAATTACATAAAAATCATCACATTAAGTAACGAAACACCAATATCCAGCATCCAAAATCCGAAGCTAACTATGGTGTTTGGAACTTTTTTTTTTAAAGGTTTGCCTCCTTGAATATCCAGCACTTGTGATAATTCAGTTGTATTCAATGACTTCACGAGACTCAAACCAAGAGACTTACTAGAAATACTTTGAGTGTAGCTGGCGTTGAGATAAGGAATGTATTGTGACTTTCCTGCAACATAAGTTTGGAAGAAAGGCAAACTTAAAACATTCATATAACGACGCGCTTGGGAAGCATCGCCAATCATTTCAGCAGGTAATGATACTTGTTGATTTGTAGGGTTAGCGTTACCAATGGTGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //