Array 1 5533-4529 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWZ01000073.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2863 NODE_73_length_25263_cov_3.82739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5532 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 5471 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 5410 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 5349 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 5288 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 5227 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 5166 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 5105 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5044 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 4983 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 4922 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 4861 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 4800 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 4739 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 4678 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 4617 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 4556 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 430-2473 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWZ01000156.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2863 NODE_156_length_7346_cov_3.4888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 430 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 491 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 552 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 613 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 674 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 735 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 796 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 857 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 918 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 979 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 1040 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 1101 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 1162 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 1223 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 1284 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 1345 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 1406 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 1467 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 1528 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 1589 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 1650 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 1712 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 1773 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 1834 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 1895 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 1956 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 2017 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 2078 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 2139 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 2200 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 2261 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2322 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 2383 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2444 29 93.1 0 A...........T................ | A [2470] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //