Array 1 25544-26731 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLHS01000043.1 Escherichia coli strain MOD1-EC5693 MOD1-EC5693_43_length_108885_cov_89.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25544 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 25605 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 25666 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 25727 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 25788 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 25849 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 25910 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 25971 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 26032 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 26093 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 26154 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 26215 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 26276 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26337 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 26398 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 26459 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 26520 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 26581 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 26642 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 26703 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1155-2281 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLHS01000146.1 Escherichia coli strain MOD1-EC5693 MOD1-EC5693_148_length_2508_cov_46.0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1155 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 1216 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 1277 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 1338 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 1399 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 1460 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 1521 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 1582 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 1643 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 1704 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 1765 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 1826 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 1887 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 1948 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 2009 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 2070 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 2131 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 2192 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 2253 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //