Array 1 1663497-1663883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066315.1 Providencia rettgeri strain R39 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1663497 28 100.0 32 ............................ ATGCAAATAATCGGATATGTATTACTCATGCT 1663557 28 100.0 32 ............................ AGTATTGCTGAATGAAGATGGCACGCTGCATA 1663617 28 100.0 32 ............................ AGACCAAACGACTCAACAGCTACGCACCACAA 1663677 28 100.0 32 ............................ ATAAATAACTTGGCTCCGAGTGTTAAGTTTAG 1663737 28 96.4 32 ............G............... TCATGCTGATGAATGGGATCAGGATGTTCTCT 1663797 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 1663857 27 89.3 0 ..........G..........-..A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTTGTTTGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : AACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1672522-1673811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066315.1 Providencia rettgeri strain R39 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1672522 28 100.0 32 ............................ TAGCTTACTTAGAAAACTACCATCACCTGAGA 1672582 28 100.0 32 ............................ ACATAGATAGCGTCAGGCGTTGACCAATCGTA 1672642 28 100.0 32 ............................ AACATTAGTGGCTTACAACAAATCGTTAAATG 1672702 28 100.0 32 ............................ TTGTTCTTCCAATTGTGTCGGGTCAGTCGGTT 1672762 28 100.0 32 ............................ CTATTGGTAAAAAACTAAAGGAAATCATTGAT 1672822 28 100.0 32 ............................ AGCAATAAACGATAGATCTGAAGCGGTGAAAA 1672882 28 100.0 32 ............................ GCCTTGGTACATAAACCTAGGAGCCCTATAGG 1672942 28 100.0 32 ............................ ATTCATCATGAAGTGACTTGCGAAAGTATGCC 1673002 28 100.0 32 ............................ GGTATGTATGCCTGGTTAACTGCTAAAGCAAA 1673062 28 100.0 32 ............................ AACACATATAGTAATGCCAGTCTAATTAAATT 1673122 28 100.0 32 ............................ AATATCTTTTAATGTTGGCGGTAAAATCCAGA 1673182 28 100.0 33 ............................ AAGCGACTTTGGGTAACTGCGGATACTTATGAT 1673243 28 100.0 32 ............................ GTCATGAAAATGCTGAGGTAATACATGTCAAA 1673303 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 1673363 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 1673423 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 1673483 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 1673543 28 100.0 32 ............................ GATGTTTAGCCACTCAGTTACCGTCTTGAGGT 1673603 28 100.0 32 ............................ TGCTCCCTCTCATATTCAAGTAGGCAAATATA 1673663 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 1673723 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 1673783 28 96.4 0 ....................T....... | G [1673809] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATACTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //