Array 1 18554-21558 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEMF02000020.1 Xanthomonas vasicola strain BCC281 scf_27134_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 18554 31 100.0 34 ............................... GTCTATGACGTCACGACCTGGATTTTACGCAACG 18619 31 100.0 36 ............................... GTCAGGTAAAGGGTCTGCTCTGCCTTTGCATACAGG 18686 31 100.0 35 ............................... AGGCATACACAGGAAACTAGGGATAAAATAAGTGC 18752 31 100.0 35 ............................... TTCACCTAGGCTCCTACCCCACCGCTGACCTGGCC 18818 31 100.0 34 ............................... CAGTTCTACGCAGAACACGAAACAATGACGACAT 18883 31 100.0 35 ............................... CTTTAGCAGGCGTTCACCACTCTCTTGATCATATG 18949 31 100.0 33 ............................... CTGGTGTGTCTGTCTACCTTGGTAAGAGTTGGC 19013 31 100.0 37 ............................... CAAGTCCACCTTGTCATAACCGTACCGATTCGCACCG 19081 31 100.0 36 ............................... CTTACTCAGCTGCATGGCTAGTGCACTTCGCTTATT 19148 31 100.0 35 ............................... AACCAACGCAAGTCTTCCGGGGCGTCTGGATCTGC 19214 31 100.0 36 ............................... CTGAAGCCCTGCCAGGTTACGTACCTTCCGAAGGGA 19281 31 100.0 35 ............................... CAGTCCTGAATAATGTCCTCATGCCCAATGAACTG 19347 31 100.0 37 ............................... CCTTGCGTTCGCCTGTCTTTGGGTCTCCCGTCCAGTG 19415 31 100.0 35 ............................... AGATTTTGGCGGTGCATCTGTTGTACTCCCTCTGC 19481 31 100.0 34 ............................... TGGGCATTGGACAACCATCAGCCCCTATGCAAGC 19546 31 100.0 35 ............................... CCACTGTGGCAGGGCCTTGACATAACCGGGGAAGC 19612 31 100.0 36 ............................... AGTACAGGTCACTGCATAGTGCCTACTGCAGTACGG 19679 31 100.0 35 ............................... CAATATGGAGAGTTCCTGATGGACTACCTAGTTGA 19745 31 100.0 34 ............................... TCGCCAGAGAGCCTTACCAGCGAACTTGCCGTGG 19810 31 100.0 35 ............................... AAGGTAAGCACAATGTGGTTGAGCAAGATCTGTCC 19876 31 100.0 34 ............................... TTAGCAAGCATGCCAACGTAGAGGTGGGCCTGAA 19941 31 100.0 34 ............................... TTAGCACCACCAGCAAAGCGGGCTAGCTGATACT 20006 31 100.0 36 ............................... AGGCACTGCACTGTCCCAGCCATTGGGGCCCTTTGA 20073 31 100.0 35 ............................... TTTGTCGGCTTTTTCAGCAAGGGCAAGCAGGAGAC 20139 31 100.0 34 ............................... GAGCTATGCGTGTTCGAACCAGTGCCAGTACACA 20204 31 100.0 36 ............................... AGCAATGTGGATTCGCAGGCTGGCGGCTCGTTACAG 20271 31 100.0 34 ............................... TGGGAGACTGTCAGACAATAAGCTGGTGCTGACG 20336 31 100.0 35 ............................... TGCAGGATGCACAGAACCACCAAGCATGGATGCAG 20402 31 100.0 35 ............................... CTAAGTGATAGCGAAGAATGCAGGCGGCTGACCTA 20468 31 100.0 37 ............................... GTGTACACATCTGCCGCCCCTAGGTCCGCAGAGGCAA 20536 31 100.0 35 ............................... AAGACTTGGTACTTTGACGAGAGTGCAGAGGGGTG 20602 31 100.0 35 ............................... AAGACTTGGTACTTTGACGAGAGTGCAGAGGGGTG 20668 31 100.0 35 ............................... ACTCTTTTGTACCAGCAGCGCATCATTCTGCGCCA 20734 31 100.0 34 ............................... CTGTGCTGCATGGCGCACGCGAGATTGCAGAGTT 20799 31 100.0 35 ............................... TTTGTCAAACATGGTAGCGGCCTCCGTTGGTGTAG 20865 31 100.0 33 ............................... ACCTTTGCAACCCTTACCAGCATACAGGCCGAT 20929 31 100.0 35 ............................... AGGCGCATCTCGAAGATCTTCACAGTTAATTTCCT 20995 31 100.0 36 ............................... ATCCCCATCCTCGTTTTGTGTGGCCGGTGCGGGCCG 21062 31 96.8 38 .....................C......... GTCTCGCTGGCGACGTTCTGGCTGCTGCTGCCCACCGG 21131 31 100.0 35 ............................... TCCTCCGGAGTCATGGTTGCATCCCCGGCTTGGCG 21197 31 100.0 35 ............................... GTTTCCAAGGTCGCAGCCAACGTCACCCGCATCAT 21263 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 21331 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 21397 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 21463 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 21528 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ====================================== ================== 46 31 99.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //