Array 1 316296-317849 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAX01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_8073_R1 NODE_2_length_441594_cov_1.39261_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316296 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316357 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316418 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316479 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 316540 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 316601 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 316662 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 316723 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 316784 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 316845 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 316906 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 316967 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317028 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317089 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317150 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317211 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317272 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317334 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317395 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317456 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 317517 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 317578 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 317639 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 317700 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 317761 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 317822 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 333982-335458 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAX01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_8073_R1 NODE_2_length_441594_cov_1.39261_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 333982 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334043 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334105 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334166 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334227 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334288 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 334349 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334410 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334471 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 334532 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 334593 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 334654 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 334715 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 334777 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 334838 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [334880] 334880 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 334941 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335002 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335063 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335124 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335185 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335246 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335307 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335368 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335429 29 96.6 0 A............................ | A [335455] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //