Array 1 18681-17157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVE010000011.1 Lactobacillus delbrueckii subsp. lactis strain FAM 20544 FAM20544-i1-1_scf11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 18680 33 100.0 36 ................................. ATCAATACCAGGGTAAATCAGCTTCCAATGGCCCTT 18611 33 100.0 34 ................................. GTACTTGTACATATGCCCGTGCTCTCTCAGCCAG 18544 33 100.0 33 ................................. TCTCTTTGTTGATGAGCATGTCGTCCATGTGGT 18478 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 18410 33 100.0 31 ................................. ATCTAACCCAAAAGAACGTCAGAAGAGATAA 18346 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 18277 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 18209 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 18143 33 100.0 34 ................................. AACGGAAGCAACCCGATACTGCCAGTAACGTCTT 18076 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 18007 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 17937 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 17867 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 17800 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 17731 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 17663 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 17596 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 17526 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 17459 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 17391 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 17323 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 17256 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 17189 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 23 33 99.3 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : ATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5696-7975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVE010000084.1 Lactobacillus delbrueckii subsp. lactis strain FAM 20544 FAM20544-i1-1_scf84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 5696 35 75.0 39 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA C [5709] 5771 35 80.6 35 C..-.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [5800,5803] 5843 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 5915 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 5987 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 6060 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 6133 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 6210 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 6285 36 100.0 36 .................................... GCAAAAGGATAGCGTGATCAGTCACATGGACGACGT 6357 36 100.0 38 .................................... TTTACTACCGTTCAGTACTCGTTAGATGTTAGTCAAGA 6431 36 100.0 37 .................................... CTGTTAGACTTGAGACAAATCAAAAAAAGGAGACTAA 6504 36 100.0 41 .................................... CAGTATCGCTCTGATTGTGAAGAATGGTTAGAGGACCTCGT 6581 36 100.0 41 .................................... GAAAATAAGGAATTGGTATTGTTGGCGGAAGAAGACCGGGA 6658 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 6732 36 100.0 41 .................................... AACGGAGTGACATAGATAAGTGGGCCAAACAGTTTAAGGAG 6809 36 100.0 36 .................................... CTCGTTTGGTAAGTATAAGTATCGCAGCGTTGAAGA 6881 36 100.0 42 .................................... AAGCAAGCAATGCTCGACATCGTTGACGAATTCGGAGTCGAC 6959 36 100.0 34 .................................... GGGGGACTTTAAAAATGAATACTAAAGAATACAT 7029 36 100.0 39 .................................... AAGTAAGGAGGTGATGACATGAGCAAGCAAACAATTAAA 7104 36 100.0 41 .................................... CCTGGGTTGAATTTAATGACCCTTCAGAATCCTTATACCTG 7181 36 100.0 35 .................................... CCAGAAGAAACGAATGATTTTATCGATGATGTTAT 7252 36 100.0 46 .................................... ACCCGGATTCCGAAATTAATAAATGGCTCGTAATCGTCTTTATGTT 7334 36 100.0 40 .................................... TGCTCCAGATCTTAGAGCAAGTGCTAGAGACTACCTTATG 7410 36 100.0 39 .................................... TGAAGCAAGTGAGCTTTTCACTATTCAATTACCAGCAGA 7485 36 100.0 38 .................................... TTGTACAGAATTCCGGCAGATTTTCTGAAGTAAAAGGA 7559 36 100.0 42 .................................... ACTATGAGTCTGACCCAAAGCAGATCCGGCAAGGGATGCTGG 7637 36 100.0 43 .................................... GCAACGGCGTCTGGGGTTTCGATCTTGATTGGATCGTTGATGA 7716 36 100.0 39 .................................... ATGGACGTTAAAAAACACTTGGAAGAAATTATTAAGATT 7791 36 100.0 42 .................................... AAAAGCACTTCAAAGATCTTAAGAAACTAGGATTAGTTCTGA 7869 36 100.0 35 .................................... TTGAAGATTACTGTCGTCATTTGCTGGAAGATCTA 7940 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 31 36 98.4 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : ACAACAAAACAAGGAGGTTA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 23494-22051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVE010000018.1 Lactobacillus delbrueckii subsp. lactis strain FAM 20544 FAM20544-i1-1_scf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 23493 36 100.0 35 .................................... TTGAAGATTACTGTCGTCATTTGCTGGAAGATCTA 23422 36 100.0 41 .................................... ACAACAAAACAAGGAGGTTACAAATGGAAAATTTAGATTAC 23345 36 100.0 36 .................................... AGGACAAAAAAATGATTAGTTCAGAAATGATTAAGA 23273 36 100.0 35 .................................... GCTTGGAAATTTTGAATACGAAATTCATTAATGAA 23202 36 100.0 40 .................................... AAGATTACAATTTTCGTTATCATTTTCACAAAATACATAG 23126 36 100.0 42 .................................... ATTTTTTAAGTAACAGCAAGAAAAAAATAAAAAGTAGTTGAC 23048 36 100.0 40 .................................... GCCTGGATCGTAGTTGTAGCCATGTTTGAAGGTTACTGTC 22972 36 100.0 36 .................................... GTCAAAAGTAAGACACACAAAAAAACAAGGAGGAAA 22900 36 100.0 34 .................................... GGAAAAAGATCAAAAAATAAAAAAAGGTTTAGCA 22830 36 100.0 38 .................................... TAGAGGACTTTGATGCCGAGACATACACCGCTGAGGAT 22756 36 100.0 38 .................................... TAAGACAACAAACAAAAATAGGAGGAAAAAATGTTAAA 22682 36 100.0 41 .................................... AACAAAATGCAAATGCAAACGTTAGACTACGCGAAAAGCGC 22605 36 100.0 37 .................................... GCTGAGTTTGCTAGAATAGAGGTTAAAATGAAAAGTA 22532 36 100.0 35 .................................... ACAGAAAAACGATGAACAAGTCCGCGTCTAGGTCA 22461 36 100.0 42 .................................... AAGGGCTGCTTATATGAGAGAGTACCGGGCTAGACTGAAAGC 22383 36 100.0 39 .................................... TCAAAAACTGTGGGAAGAATTTATGAAATGGCAAACGGA 22308 36 100.0 35 .................................... GGACATTTTTCACGATTGGGACATCTTCCCGGATT 22237 36 100.0 39 .................................... GAATTTGATAAGATTATCAAGGATCAGACTAAAAATTAT 22162 36 100.0 40 .................................... GGAGGGAAAAATGTCAGCACTAGATATCGTTTGTGTCGTA 22086 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 20 36 100.0 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : AAAGATCTTAAGAAACTAGGATTAGTTCTG # Right flank : AGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //