Array 1 29327-34306 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXC01000012.1 Thauera sp. 63 Cont12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 29327 32 100.0 34 ................................ TTCGACACGGCGCCATTCCGTGACGCACCGTTAT 29393 32 100.0 34 ................................ CACCGGACGAGCGTGTGTTGTACGGCGGGGGCGC 29459 32 100.0 36 ................................ CGCACCCAGGAACGCAACCGCATCGGCGGCTACGGC 29527 32 100.0 33 ................................ ACCTCCTGCACCTCGCGCCACACCGCACGCATT 29592 32 100.0 36 ................................ TCGGCACAGCTTGCCGTCAACGCCGCGGATGTCGGC 29660 32 100.0 34 ................................ GCAAATCCTGCCAGATTGAGCGATTGCCGGCCCG 29726 32 100.0 36 ................................ GAAGCGCCTTTGCGGCTTCGAAGTGGGTCAGCGGCG 29794 32 100.0 35 ................................ AGCAGCTCCCCCGTGGTGAAGTCGTACCAAGACAC 29861 32 100.0 34 ................................ AGCGCCAAGCAGTGGGCGCCGCGCCAGCGCTTGG 29927 32 100.0 34 ................................ AGTGGCTTGGTGCTGTGGTGGCGGACGAGGTCCT 29993 32 100.0 34 ................................ TTGCGCACGTTTTCGCGATGCCACGCGAGCACCT 30059 32 100.0 35 ................................ ATCGAAGGCGACGAGAAGAAGAGCATCCTCACCTT 30126 32 100.0 34 ................................ GTTGCGAGTTTCGAGACGTCGTCGCCGTATTCCT 30192 32 100.0 35 ................................ GTCCAGGCCTGCCCAAGCGCCAGCGTGATACCCGC 30259 32 100.0 34 ................................ AGGGTCGAGCCTAGAACCGATGATGAGGTTGGCG 30325 32 100.0 36 ................................ GGCCAGTCGATCGACGCCGCCGACGACTTCGACGAA 30393 32 100.0 33 ................................ ATGCCTTGTGCGCCAACCACGGCCACGTGGCCG 30458 32 100.0 34 ................................ TGCTGCGCCAGCGCGTCAATGAGGCCGCCCGCGC 30524 32 100.0 33 ................................ TCGATCTTCGATAGCTCGAAGTCGCGGTCTAGG 30589 32 100.0 35 ................................ TTTGTACTGATGCCGGTTCGGAGGTCTGCACTTCG 30656 32 100.0 34 ................................ TGGTGTGGGGTGTGGCGGCCGTGGGCGGTCAGCA 30722 32 100.0 36 ................................ GTCTGCTCCTTCCGGCTGCCAGGCAAGGGAGGCATC 30790 32 100.0 35 ................................ TTAAGCGGCTCGGTGACAGTGATCGTGCTCGGCAG 30857 32 100.0 35 ................................ TGTTTCGGCGCGGGGGCGAGGCGTCGGACGCGCGG 30924 32 100.0 35 ................................ ATCGCCTGTTCTTCGGCGCGGGCGGCCACCGCCGC 30991 32 100.0 35 ................................ CCGCCGATTGCCGGGACTGTCACGCTTCTGTCGGC 31058 32 100.0 35 ................................ TACTCAGTGGCCTTCCCATCCGGCACCGCGAGCGG 31125 32 100.0 32 ................................ GCGTCACACTGCGGCGGTGCTCAAGCTGCATG 31189 32 100.0 34 ................................ GCATCACCTCGTCTGCCGCAGCGTCGTCTGCGCC 31255 32 100.0 36 ................................ CTTGATGCAGCGGAGGCAAGGCGCAAGTAGCCTCGC 31323 32 100.0 34 ................................ TCGAGATCGGCGACACCGTGATGATACTGTCGCC 31389 32 100.0 34 ................................ AGGTGCTTGCGCGTCTGCTGGATGCCCGTTACAA 31455 32 100.0 34 ................................ AGTGCGCGTGGCGACGTCGATGCGATCGGGCACG 31521 32 100.0 33 ................................ AGGCCGACGACGCCGCTATCTGCACCGTCGAAC 31586 32 100.0 35 ................................ TGCAATCGCGCGCGCAAGGCCCGGCGTCTGCTCCA 31653 32 100.0 37 ................................ CGTTAGCCATCGACGTGGTCCGCCCGGTCATGGACTA 31722 32 100.0 36 ................................ GCGCCGTTGGTGGCTGTCGAGATGCCGAGAGGGGGT 31790 32 100.0 34 ................................ CGCATCCGGTCGAGATACGCCGCAACGTCCTCGG 31856 32 100.0 35 ................................ CTGGCGAGCGCTGGGTGGGCTTTTCGGCCGAAGAG 31923 32 100.0 36 ................................ TGCAGTGCGTCGATGGCCGTCGATGCCTGCGAAATG 31991 32 100.0 35 ................................ AGAATGTTGAGAGCTGCTTCCAGCAGCTGTAGCGG 32058 32 100.0 35 ................................ ATGGTGGGTCCCTACTTGAAAAGGTCCGGGAACAT 32125 32 100.0 36 ................................ GAGCGCCCCCCATACGACCTCTACCGTGTAGTCCTC 32193 32 100.0 37 ................................ TAGGCTGTAGGCGGTGCTGGCCGTGAGCCCCGAGATC 32262 32 100.0 36 ................................ CCTGCGCCGACCGCGAACTGGGGCAGCGTCACGCAC 32330 32 100.0 35 ................................ CATGCCCACACGTCCGCATTAAATTTGCTGTTGAG 32397 32 100.0 37 ................................ ACCGACGTGCTCACGCGCGAACTGCACCTGCCGGCCA 32466 32 100.0 35 ................................ CGCCTCATAGCCCAGACCAACAAGGGCAACTACCG 32533 32 100.0 35 ................................ ATCGTGAAGGAGGGCGAGTGATGGCCTGGGCCTAT 32600 32 100.0 35 ................................ CGCTCGGTGAAAGAGGCCATGGCCGCAGGCATCTA 32667 32 100.0 34 ................................ ATTGCCGCAGCGAACCCCGCAGCAATCTCCGAGC 32733 32 100.0 35 ................................ CGTATCGGCGCGCAAGGGTCTGCACGTTGCGGCCG 32800 32 100.0 34 ................................ ACGCGGCCGTCGGCCAGGGTGTTATCGACTGCAG 32866 32 100.0 35 ................................ GACCAGCAGCACCGCAAAGCGGCCGGCCAGCGCGT 32933 32 100.0 35 ................................ AGCCGCGTCGTCGAAAACCTCAACTACAGCGCGGA 33000 32 100.0 35 ................................ CAGATCGACAACTGATCGACATGCAGAACTGCATC 33067 32 100.0 36 ................................ CCCGAGCACGAAACAATCATCATGCACTCCGCGGAC 33135 32 100.0 35 ................................ ACCGCCAGCATCAGCGCCGATGGTGTCAAGGCAGC 33202 32 100.0 36 ................................ TCGGCCAGAATGAGGTCGGGCGTCTGGCTGCCGTCG 33270 32 100.0 36 ................................ TTCAAGGTCCGACTCGGCGCACCGCAGAGCTTGGGC 33338 32 100.0 36 ................................ GACACGTCGGTCGGAATCAACAACATCACGGCCGAG 33406 32 100.0 35 ................................ TGAAGTGCCGCAGCGCGGCAACACGTCGATCGAAG 33473 32 100.0 34 ................................ ACCTCCTGCACCTCGCGCCACACCGCACGCATTT 33539 32 100.0 36 ................................ TTCTCGGTGGTCCGCCGCAGGTTGGCGCGCTCGCCG 33607 32 100.0 33 ................................ TCCGGCCGCGCCCGCCCGACGCGCTACACCGGC 33672 32 100.0 34 ................................ CGCGCCATCGTTCCGCCCTCCGTCATTGATCCGC 33738 32 100.0 35 ................................ GGCGCCGTGGTGGCGCTGGCATCGCCTCTGCTGCC 33805 32 100.0 34 ................................ TTCGTCGTGACGTGGCCTTTCGCCATGCGCTCTA 33871 32 100.0 35 ................................ CGTTCCGACTTCAAGCGCATGTTCGATGTGTGGCG 33938 32 100.0 35 ................................ CCAGCCAATCGCCGACTTCAGCGCGGCCAGAACCG 34005 32 100.0 35 ................................ GCCTGCTGCGCGGGCGTGAATGCTTTTGCCTCGTC 34072 32 100.0 35 ................................ AAATACGCCGACCAAGTGAGAATTGGGGACAATTT 34139 32 100.0 36 ................................ TCCGCGGCCAGGCGCTGGGCACCCCGGCCACATGGT 34207 32 100.0 36 ................................ GATAGCTCGGGCTGGACCGTGGCGACGGGCGGCAGC 34275 32 87.5 0 .........................A..C.GT | ========== ====== ====== ====== ================================ ===================================== ================== 75 32 99.8 35 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TTCCTCTGGAAGTAGGGTGACGTCATGATGGTTCTCGTCAGCTACGACGTAAGCACGAGCAGCGCTAGTGGCGAGAAGCGCCTGCGTCGCCTGGCCAAGGCGTGTCGTGACTACGGGCAGAGGGTGCAGTACTCAGTGTTCGAGATCGAGGTGGACTACGCGCAGTGGACCTTCCTGAAGAATCGGCTGTGCGAATTGATTGATCCCGAGCAGGATAGTCTGCGGTTCTATTATCTCGGCAAGAACTGGCAGAGCAAGGTCGAACATGTCGGCGCCAAACCAGTCATTGATCTGAACGGCCCGCTCATCCTCTGAGTCCTTGCGTGCGAACCTGAAGCGTCCATAAAAACCAGGGGAGGTTCGCACTGTGGCAAAACCATTGATCTTCTGGTTGTCCGGCGAAGAACTCGATAGTCACGCCCCCGTTTTCAAGCAGTGCTTTCTTGGTTCGCCGAGATCCGATATTTTTCGTATTGTTTTCATGTTGTTGTAAGGACACA # Right flank : TCGGAGAAATCGGGCCGGTGTCTTCGTACCCGGAGCTCTTGTCGTCGTTGTGTGAGCTCAAGGTCGAATTAATGAGCGGGTGTCGGCTACGGGAGGTTTCGGAAAATGAGACGGGGGATGCAACTGCATCCCCCGTCTTGTATCACTTGGTCGGCATGTGAGCTTTCCCGTTCAGCCAAGTATGCAAACTATCATTCTGCTTACTTCAGCGGCTCCCACTTGCCATTGGCGAAGCCGTACAGGCTCACCCCGCCTTCCTTGATGTCGCCCTTGGGGTCGAAGGCGATGTTGCCGGTGACGCCCTTGAAGTTCACCTTCTGCATCGCCGGCAGGTACTTGGCCGGGTCGGTGGAGTCGGCGGCCTTCATGCCTTCGATCAGCGCGGTGGCGGCGTCGTAGGCATACGGGGCGTAGAGCAGCACGTCGACGTTGAAGCGCTGCTTGAAGCGCGACAGGAACTCGCCGCCGCCGGGCATCATCGACAGCGGGATGCCGGCCTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45597-42820 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXC01000004.1 Thauera sp. 63 Cont4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45596 29 100.0 32 ............................. TATTTCTGGGCCGGGTACATGAGGACTGTCGG 45535 29 96.6 32 ............................T CCATCAGCGTCGGAGAACCCACTCTCGGATTG 45474 29 100.0 32 ............................. TACGGACGTCCGTACTCGGCTGGGAGTCCGCG 45413 29 100.0 32 ............................. TCGGCCATGGGGCCGCCGCCGGTTTCGAGGAA 45352 29 100.0 32 ............................. CCGACGCGGTGTCGCTTGCGCAGTCGCTGCTG 45291 29 100.0 32 ............................. CCATTATCGACGCGCTCCTGCTGCTGGATTCA 45230 29 100.0 32 ............................. CGCACCGCATATCGCGCGGCGGCTGAACAGTT 45169 29 100.0 32 ............................. CCGACGCGTTCGCCGCCTGGCTTCTTGGCACG 45108 29 100.0 33 ............................. GATTGCGGCGCTTGCTCTGCCCTCTTCCACCGC 45046 29 100.0 32 ............................. GTTGAGCCAGGGCCGTCGTACTCGAATGACGT 44985 29 100.0 32 ............................. CACGCAGAGTCGCTGCTTCCGATGCTGGGACT 44924 29 100.0 32 ............................. TCTTCGCCGTAGATCCACTGCATCTCGTTGCG 44863 29 100.0 32 ............................. TCACTTTCATGAATTTCCCCTTTCGGCAGTGC 44802 29 100.0 33 ............................. AGTTCCGGGGCGGCGGCCTTTGGCTCTCTGTTC 44740 29 100.0 32 ............................. GCTGCGCTTCGGGTGCTCGTTGGGCTTCACGT 44679 29 100.0 32 ............................. GGCGTCTTCACCCTGGCGGGTGCGGCCCTTGT 44618 29 100.0 32 ............................. GCAAGCGTTAGCGTGAGCAAAGCGCAACTGTG 44557 29 100.0 32 ............................. CCGTACCTGCCGGAATCGGCCCGCAACCTGCT 44496 29 100.0 32 ............................. GCCATCATGACAGAGCGAACTTTCAATCTGGT 44435 29 100.0 32 ............................. TCGACGACCTGAACGGGCGTATAGACGATGCC 44374 29 100.0 32 ............................. TGATGCCGCACTGGAACGAAGCACGGCTGCAG 44313 29 100.0 32 ............................. CAAGCAGCTAGTGCAATGTACGGCGGGTTTGT 44252 29 100.0 32 ............................. GAATTGAACGCGCCCGGTCGGACTTCTTCCAG 44191 29 100.0 32 ............................. GGGTCGACTAGGTCGATTACAGCGCAGTGACG 44130 29 100.0 32 ............................. CTCACGGCCTTGCGCCGCCCTGCTGCCGTCTC 44069 29 100.0 32 ............................. GCGTGCGTGATCCCGACCTTTTGCATCGCGGC 44008 29 100.0 32 ............................. TGACGTCGAGGAAATCGTCGAGCTCATCGAGC 43947 29 100.0 32 ............................. CGTGGCGGCGGAGATCGGAAATGCGATTATCC 43886 29 100.0 32 ............................. AGAAAAAAATATCCTTCTTCGCATTGATGCTG 43825 29 100.0 32 ............................. GTTATTGGCGGCCCGATTTGGGCGGCGCTACT 43764 29 100.0 32 ............................. ACATCGCATACCCTTCGTTCATGACAATCGGC 43703 29 100.0 32 ............................. TGGAACCCGGACCTGCGCCACATCGGCTACCA 43642 29 100.0 32 ............................. GAGTAGCTGATGGCGCAGTACTGGGAAGACTG 43581 29 100.0 32 ............................. GAGATCCTGACGGAGTACCTCGTCTATCCGTA 43520 29 100.0 33 ............................. CTCGTCATGGGCACGCATATTCATGGCGCGGGC 43458 29 96.6 32 .........................T... TTGTCGAGGCGCCTGGCGCACCCGAGAGTGCC 43397 29 100.0 32 ............................. CTGGCCGGCATCCTCACGCGCACGGCAAACGT 43336 29 96.6 32 ............................T TTACCGGCGTGCCCGGCACTGTCGCCTGATAG 43275 29 100.0 32 ............................. TCGCATAGCCGTCCGGCAGGGTGCGGAAGGGA 43214 29 100.0 32 ............................. AACTCGCGCATGATCTGCGACCATTGCACCGC 43153 29 100.0 32 ............................. TGCAGCGAGACAGTCGGCGCGGAGGTGACAAT 43092 29 100.0 32 ............................. GCGCCCCGAGCAGATCGAGCGGGAGCCCTTCT 43031 29 100.0 32 ............................. TGCCCGCCCTGCGCATGGTCGAGACGATGACG 42970 29 100.0 32 ............................. GCAGCGTGAGTGCGCCGCAGGGGTCAGCAGAG 42909 29 100.0 32 ............................. CACTTTGTCACGGCGGGTACGCTCTATCGCGT 42848 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.8 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : GGAACGCATCATCCCGGACATCGAAGAGATCCTTGCCGCCGGCGAAATTCCCCGCCCCGAGGCGCCGGAAGAGTCCGTCGCCCCTGCCATCACCAATCCAGAGAGTCTGGGTGATGCTGGTCATCGTGCTTGAGAATGCTCCGCCCCGGCTACGGGGCCGGCTGGCCCTATGGCTGCTGGAGGTGCGCGCCGGAGTGTATGTGGGCACATATTCGCGCAAGGTGCGGGAGCACATCTGGAACCAGGTGGAAGCTGGAATTGAAGATGGTAATGCGGTGATGATGTGGCACACGAACAACGAAGCTGGTTTCGAGTTCCAGACCCTCGGCCCCAACCGTCGGCTGCCCGCCGACTGGGACGGCGTGCGGCTTGTAAGTTTCCATCCAGACGCACAGAAGAACGATCTTTAAAAACTCGAAAACATGCCAATGGCAATAAAATGAGTCGGTGAAATTCACGCTTCAAATATTTCCATTAAAATTCATGGAGATGGAGGCAGT # Right flank : GGCTGTCAGGCGACACCGTAAATTGACCCCCTAGCGACACGAGGAACTGACCCCCTCGTTCGCAAGGAGGCCACTGTTGGAAACGAAGCGCAGCGAGGTGAATCCTGTACGCCGTCTGGTTTGCGGAGTGCAGGAGATGTTGGAGCCGGAGGCGGTCACGACGATCGTTCGGTTGGGGCAGTCGGGGTGGGGCGCGAAGCGGATCGCCAGGACGTTGGGCATCGCGCGCAACACGGTGCGGCGGTATCTGAACGCGGGCGGGCCGGTGCCCTACCGGCAGCCGCAGCGCGACAGCGTGCTGGGCGGTCATGAGGCGTGGCTGCGGGAGCGTTTCCTGCAGCACCGGGGCAACTGCGACGTGGTGCGCCAGCAGTTGAGCAAGGAGCTCGGGATCGACACGAGCCTGCGCACGGTCGAGCGCGCGTGCCGAGGGTTCCGTCAGGAGCTTGAAGCGAGCCGCCGTGCGACGATCCGCTTCGAGACCGCGCAGGGCGAGCAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //