Array 1 218941-219227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLJ010000006.1 Listeria ivanovii strain H3291 NODE_1_length_956083_cov_38.6589_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 218941 29 100.0 35 ............................. CTGTATAAATTTCATCCGATGAATTTCGACATCGT 219005 29 100.0 36 ............................. AAATCGTTGTGAGATAATTATTTCAGATTGAGAATT 219070 29 100.0 36 ............................. GTGATAGAAATGTGAGGACTATCCGTTGCCACGCCA 219135 29 96.6 35 ................A............ ACATACAAAGCGGTTTGGAAATTTTCTGAACCAAC 219199 29 82.8 0 .......C....C..GA.....A...... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 95.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TCAGCTGACGTTCTATTAGAAAAAGGTGCTGTAGAAGTAATCGCCTGTGCAACTCATTCAGTTATGGCTGGAGATGCAACAGAACGATTACAAAACTCACCAATCAAAGAAATAATCATATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGAAAAGCTAACAACTATCTCCATTGGTCGAATCTTAGGTCGTGCAATCGAAGGGGTTCAAGAAAATCGCTCGTTGCATCCACTTTTTTAAGGAGATTAATAGTAGGAAATTGGGAACAGGGCTTCTATTGGGGCTCTGTTTTTTTATGAACTATTATCTGTCGACCATCAGTAGTGCAGAAAACAGGGGAGGTCGACAGAAAACTGGATTGACTGTGAGAGAATGAGTTTGAAGCTTTTAAAGTTAGTTATTAGTAGTTAGACATTCAAATTTCACCCGATTTGAAGAAGGTCGACAATAATAGGCGTTTGAGGTAAGATGGGAGTAAGGAAAAAATGAAGCGG # Right flank : TTTGTCTAACCTTTAAACATATCTACAATATTAGCCAACTCAAAAACAACAAGAATACATAAAAAGGGAGGAAACACCAATGAAAAAAGCGCTTTGCCCCATCCTATTGCTATTGATCCTACTAGCCAGTTGCTCCACGCAAGATGAAACTCTATCCCCGAATACCAAAATTCATAAAAATAGTGTCATTAGAGCTGATTATAAGATACCACAAAACCTGGCAGAACTAGAATCAGACAGCGAAGATATTGTCCAAGTAAAATTAATACGAAATAAAGAAATTGGTAAAGGAAACAACAGCTCAATAACGGAAGTAGAAATAATCAAAAACTACAAAGGCAGTTTTGAGCCCGGTGATAAAGTGGATATTTCAGAACCGTGGCTTTTAACTTCAGGAGAATACCAAGCGGTGGAAAATTACATTGCACTCGAAAAAGGTCAAGAATATATCCTGTTTTTAAGTGGTGGACATGGCACGGATAAAGTAAGCTCAATCACGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 228215-228827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLJ010000006.1 Listeria ivanovii strain H3291 NODE_1_length_956083_cov_38.6589_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 228215 29 100.0 37 ............................. AACGACGAAATGAACAAGTTATATAAAAAACATCCAG 228281 29 100.0 36 ............................. TCAATTCCCTTGTTCGCTATAAACGGATGGAATAAA 228346 29 100.0 37 ............................. AGCTTCCTTTTTTTAAGAAATTAGCAACATTTTCAGC 228412 29 100.0 34 ............................. GGAGGAACAGCGACCGGTTTCGGCTCGGATATTA 228475 29 100.0 36 ............................. TAGCTTTGCATTTTTTCAGTGATAGAAGTCGCATAT 228540 29 100.0 35 ............................. CCACATATAAAATTACGCCTCCTAATTTTAGTAAT 228604 29 100.0 35 ............................. AACGATATTGGTACAAAAGTAAATTTATCGTTTTT 228668 29 100.0 36 ............................. AATATCATAGATGCGACTACAACGCCGTCTGACACG 228733 29 100.0 37 ............................. GTCAAATTGCTCATTGAAATAAAGCGGGTTTGTGATT 228799 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 36 GTTTTAATTACTTATTATGAAATGTAAAT # Left flank : TAGCTGCTTTACAGTATTCTTGCTTGTATCTGATGGTGACATTTCTAATCATGATTGGAACCTCTTATAAAAATTATCAGGAGTTATTAAGCATAGATGGTGAAATATTGTATCAATACTTCATAAATGGAAGCCTGCAAATATTTTTTTATAGTTTAATTATCCTATTAACTTATAGTATAACGGGAAAAATAACGTATGCTCTATATCTGAATCTAGGGTTAATTATCTTGCTGCTACCAGTAATAAATATTAATCATATTCTTCCTATTGGATTAAATGCTATGGGAATGCTTGAGGATAGAACGCCATATCAATTATCTCTACAATTACTGATAGCCATATTGATGATTACAATGATATTAATTTTAGTTAATAGAAAAAGAACGATACCGCAATAAGCATAAAAAAGGAGCGAAACAATGAGTGATACTATAATTGAATGTATTAATGTTTCAAAAGAGTTTAAACATATACAGTTGTTTACGGATGTTAATATA # Right flank : TATTTTTTGTGTCGAGCCAATTAAATTGTGTATTTGAATTTTAGCTTCTTAACATTAATAGATAAAATATTCATTGAATTTCTAAATCTCTTTGTCAAAGTAAATGTGGGAAATAAGATGGTATAGGCTAGAAGAAAACAAAGCAAAAGTTTGCGAACTAGAAATCCAGTAAGTACCTTGCAAAAGAAGTAAAGCGCATGCGGCGAAAAGACATCACCGAACTAAATGGTTATATTTACAGGTTAAGAGGTAGCAATACAATAGTAAAAATTGGCCCGAAAAATCAAAGGAGCAATCACAGACTCAGAGGACTAACGAATATAGCGATACCTTTAGAGCAGATAAAAAGCTTTAAGGGTATTTTTATCTCCAAAAACCTCTCTTTTACTGGCCCATCCCCATATTCCTAATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAGTAACATAACTCTAAACTTATAATGAACGTAGTAAATGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //