Array 1 2394633-2395856 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFSB01000001.1 Actinobacillus seminis strain NCTC10851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2394633 36 97.2 30 A................................... TATGTAATGTGTTGTAACGTAATAAAAAAG 2394699 36 100.0 30 .................................... TCTAAGCCCTGTTTCAAGTCAAAGGCAAGT 2394765 36 100.0 30 .................................... TAGGGTATTCACGACCAACCATTGCCCAAG 2394831 36 100.0 30 .................................... TGAAGATACAGGTTATAAGCGAATAGGTTT 2394897 36 100.0 30 .................................... TATGTAATGTGTTGTAACGTAATAAAAAAG 2394963 36 100.0 30 .................................... TCTAAGCCCTGTTTCAAGTCAAAGGCAAGT 2395029 36 100.0 30 .................................... TAGGGTATTCACGACCAACCATTGCCCAAG 2395095 36 100.0 30 .................................... TGAAGATACAGGTTATAAGCGAATAGGTTT 2395161 36 100.0 30 .................................... GGATTAAGGCGGGAGGAATCGATTAAGTTT 2395227 36 100.0 30 .................................... GCTTACCAAGCGTTTTAATGTATGGTGCAA 2395293 36 97.2 30 ................................T... AAAGGAGATTTAACTATGGATAAAGAAAAA 2395359 36 100.0 30 .................................... TTGACTGCATTTTCAAAAGACTCGTAAGCA 2395425 36 100.0 30 .................................... GCAAACTACGTCTTGCCGACACTTTCGTGG 2395491 36 100.0 30 .................................... AAGATGGGTATATTATTCACCAGACACTGC 2395557 36 100.0 30 .................................... TCTAAACAAATAATCATTTCTCACCTCGCA 2395623 36 100.0 30 .................................... GACATTAGCTGGCTTTTGCGTGGTAATGGC 2395689 36 100.0 30 .................................... CTCCCCCGCCCGCTCTATCTGTTTGTTTTT 2395755 36 100.0 30 .................................... TTTCACGATTAGCATATAAGTGCGCAATGT 2395821 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGGGTTAAGTTTCTGGAGAAAGATGAGGAAAAGGCTGAGTAATCAGCCTCAGACCGCTGACAACCCCCACTATTTTTACAATCAATAAAAAATAGTGGAGTTGTTTTGTATTTGATGGCTTGTAAACTAATATTCTTGCCCTACTAATTTTAGAACGCTCATTCCAAGTATTCGGCGATATACCTCAATATATTCCCTTATCCAAGCCATAAAACAATATAAAATAGCTCGGATAACAAGGGCTATCTTCTTGATATTTTGGGCAGAACTACGTTCTACGGTTTCTTTGCCTCTTGCATAAATCACTTTTCCTTTTTCGCTTAGCCTTACTTCATTGGCTCTATCGACGCTTGCTTGATAAATATGGCGTGTAATGAGTTTTTGACCGGATTGGCTTTGACTACAAGGTTGTCCGGCCGGGCAATTAACACAAACCGCTTTATTCGACACATAACAGTGATAACCCTTTCGTGTCGTTGTTTGGTAAATAAGCGTTTCGC # Right flank : TTCCGATGCGCTGGTGCCTTATTATTCAAGGCGCCAGCGCATTTTTGTTAGTAAAAAAATCGAGGAAATTATTTCAAAATATGCCTTTTTCGTGAAATATTTAGCAAAAAGTGCGGTTAAAATTTGAAAAGATTTGTGTAAAAAAAGAAGTTTTTGCTGAAATTTAGTAAAAATTTCTGTCTATAAAATAGTTAATCAAATCATGTGAGCGGTTAAATTTTGCTCAAAATAAATGAGGCATAAATTGTAACAAATACTATTTTTATCGCTAAAAAAGTAGCATTTGATTGGCATTTACTTTCTTCTCTTGAATTTTTAACTCGCCTAACAAAATCGTCATACCGGCAAATTGCTTTTCCGTTACTTCAAGACAACGGATGGCGCCCTCTTCAGGTAAATGTTCACATAAACGTTTGTGGTGTTTTTCCAGCGAATCTCGCCCTCGAACAATACGGGCATACACCGAAAGTTGTAACATTTGATAGCCATCTTTAAGCAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //