Array 1 4197-4464 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXDT01000132.1 Photorhabdus temperata J3 Contig132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4197 28 100.0 32 ............................ GATATGCGAACCCACCAGATTGATCAGCCTCA 4257 28 100.0 32 ............................ GACTTGCTTGAATCTAAATTCTGCTGCGTAAT 4317 28 100.0 32 ............................ TGTGGCTTATCTGACCTATTTTGCTTCTCATC 4377 28 100.0 32 ............................ ATTGCAACTGGGATGAGCTACATGAATTGCAA 4437 28 96.4 0 .C.......................... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGTTGCAGGATTTACAGGCGCTACCTTGGTTAAAAGGGCTCAGGGATTATACGGAGGTGACCGATAGCCTGCCAGTACCTCAAGACACTCAATATCGTTGTGTTAGCCGGGTACAGGTTAAAAGTAACGTAGAGCGGCTTCGCCGTCGTTCGATCAAAAAGAGGTGGTTAACTGAGGAACAAGCTCGGCAATGCATCCCAATAAGCAAAGAGCAACGTACTGATTTACCGTTTCTGAGCCTTAAGAGTTTGTCATCAGGGCAAAGCTTTCCATTGTTTTTCGAACAGGGACCAATAGAAGACAGACCAACACCAGGAGTTTTTAGTTCTTATGGATTAAGTGCATCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATTATAACCTTTTGATTTATTTAAGATATTAGCCGCTGCTTCTAAAAAGGGTTTTTCCGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGGTTAAAGTTAGTATTTAACA # Right flank : ATGCTGGGTTAGATCTATACCCACAACTTTTATCGTTTCCGTGATGCTGCTCCCCGAGAACGTAGTTAGTTCGCATTAATTTGGTACATTATTATTCGTCGGGGAAGGATGTTCATTACATCACTACAATTTCCGGTGTTAAATAGTTAAAAGTAAGGCTGACAGATACAAACCGATACCAAAAGAGACATGTGCGACAAGGCTACGTAGTCTTGCTACATGAGGTTTAGGTGTCTTCGAGGCTGCAAATCCGAAACCGAAACAGGGTTGCATAATAAAGAAGGGGGCAACTGTTGAAATCGCGCCCATTATAATCGCGGCCAAAAGGGTCGGTGAGTCTGTCCAGCTTATTCCCATAATGACAATAAACAACCAGGTAAAAATAATCCCAATCAGGTAATGTGCTGTCCAGCCAAGTATCTGTTCGCCAATAATAGGAGGAGATTGTGTGATAGTGTTATGACTTATTCTCCCTTTAGACAGATGTCCAATCCAGCGAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7482-6972 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXDT01000173.1 Photorhabdus temperata J3 Contig173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7481 28 100.0 32 ............................ AATGGTTCTACTGAAAGTAATCCGATTATTCG 7421 28 100.0 32 ............................ AAGATACTCGCCTTCAAGTGCCAACTTGTGAA 7361 28 100.0 32 ............................ ATTGAAACAAATTTAGCGACTGTCGTCGTGGC 7301 28 100.0 32 ............................ AAAACAACAGAGTGGTATCTATGAGTAATCAA 7241 28 100.0 32 ............................ CATTCAACATCTGCTTTGTAGTCTATAGCTTT 7181 28 100.0 32 ............................ TACACCGCGTACCAAGTCAAGTTTCAAGCCCA 7121 28 100.0 32 ............................ GAAAAATTCCCAATCAACATCAAAATCAAAAA 7061 28 100.0 32 ............................ TTCGTTGGGCCAGCGCGGAAGATATAACTCAC 7001 28 92.9 0 ............G.......T....... | G,A [6975,6979] ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTATACCCAAGGATAGTCTGTATATATGCGGAGAAAATAAGCCAATAACAGTGAAAAAGAGTAAATTTACGGCAATCGAACAAGAGAGGGCTTTACATCTGTCTTAGTGCTGTTTATAGTGCACGCCATTGCGGAGGGGTGGCCGAGCGGCTTAAGGCAGCGGTCTTGAAAACCGCCGATGGGAAACCATCCGAGAGTTCGAATCTCTCCTCCTCCGCCACTTCTTTCTAACCTTATGTTTATGAATAATTTTCCTGAGATTCACACATTATTGTTACACACGAGTGTACCACATCGTTTGGAGAATTCATTCGTATGTGTACTCATCTTTATCATAAATGATGATGTTTTCGCAGTACCCTAATTTATACCCTTTTTTTGCATATAATCTTAATATATTGATTTTAAAGAAAAATAAAATGTCTCTCATAAAAAGGGTTTTATCACTTTCTAACCATTATGTTCTTTGATAATCAATAGATTAGAGTTAATATGTAACA # Right flank : CTCGGAGCTATCCCTGTTTTTGCAAAGTGTTATGTAATAATTTAGCAAAGAATTGTAAATTTTTTTGATTTTCATTTGCGATATTTTACCTTGTGTAAAATTTATGCATAATATTTCCATAAATGAAATTAATTATTTAGGTAATTTTTAAATTATGGATAACAACTTCTCTCCGAGTGACCTAAAAACGATTTTGCATTCCAAGCGATCGAATATTTATTACCTGCAATATTGTCGGGTATTAGTGAATGGTGGCCGTGTTGAATATGTCACTGATGAAGGAAAGCAATCACTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGGACTTCTATTACTCAGGCTGCAATGCGTGAATTCGCCAGAGCGGGTGTTCTGGTTGGTTTTTGTGGCGGCGGTGGAACACCGCTGTTCGCAGCTAATGATGTTGAAGTTGATGTGTCTTGGCTAACGCCACAAAGTGAATATCGCCCTACTGAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10163-9235 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXDT01000173.1 Photorhabdus temperata J3 Contig173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10162 28 100.0 32 ............................ ATGATCGACGCCTATCATGAAATTCTGCCAGA 10102 28 100.0 32 ............................ ACAATATGCCCACAAAAGTTTGGTGTAGTCAA 10042 28 100.0 32 ............................ AACAGATTTACTTTATAGGGGCTCGGAGAATT 9982 28 100.0 32 ............................ AAAAAGAGATCTTATTCTTAAAAGGCGTCAGC 9922 28 100.0 32 ............................ TGTTCCCGCAGCCGGGGCGCTTTCTCTTAAGT 9862 28 100.0 32 ............................ AGTTCCTGTATCCATTAATTAATTGGCTTATC 9802 28 100.0 32 ............................ TAACACCGCCTCATGTGGCTGAAATTATGATA 9742 28 100.0 32 ............................ AATAGCTCATTGGCTATCCTCGTATAGCCATT 9682 28 100.0 32 ............................ AAAAGTGAGGATTAAACAATGTCAGACAATAA 9622 28 100.0 32 ............................ ACTCGGAAAAGTGGGCGATCGGCTGTGGGTGC 9562 28 100.0 32 ............................ TCTATCGTTATCCCTGATTCTGTCAGCAAGAT 9502 28 100.0 32 ............................ TTGGTGAAATTAGATTAAAATATATTTATGTA 9442 28 100.0 32 ............................ GTATTTCAGGGACCACTATAATTAGTGGTAAA 9382 28 100.0 32 ............................ CGTGGGCGGAATTATTACTGTTCCGGCTGGTG 9322 28 100.0 32 ............................ CACTCAGATAGCAACTTGCCTTGAAATGGTCT 9262 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCCAGCCTGTTGATATGGTAGATGTATTTCGCAACGCGGAAGCTGCATATAGAGTCGCTCAAGAAGCTATCGATATCAAAGCAAAAGTGCTCTGGTTGCAACTTGGTGTTATTAACGAACAAGCAAAAAGGTTGGCGGAGGAAGCGGGTCTGGAAATTGTTATGGATCACTGTCCGAAAATTGAAATCCCAAGATTAGGGCTGGAAAAGTAATATCTTTCAGTTTACTTCTGTTCTGTTGTTCATCAATAAGTGAAAGGAGCCTGGCGCTGATGTCTAAGTTGCACGAATTTAAGGAGCTAGATGGCAAAATGCGCTTGGGTTTCAAATATTGCCATAAGATACCCTGTTTCTACGGACCCCAATTTTGACCCTTTTTTATCGCTAATCAATAACGTTCTGATTTTAAAGTAAAATAAATTAGCCCTTATAAAAAGGGTTTTTTCACTTTTTATAACTATACTCTTTGATAGTCAGCAAGTTAGAGGTAATATGCAACA # Right flank : TCCAGTAACTGCCTTTACGAGGAATATAATATGGGTTAATTGCGCAGTCGTGGGGCCAGTAACTGATTACGGATGGATTCTGCTAACTCATCCAGGGAAGGTTGTTCTGGATGGTCATCGGATGCTTCATAGGATAATTGCGCTTCGGCTAAATAAGTATGTACAGGCTGGCCGTCGTCATCTTCCATCACAACATGATACCAGGGAGCAGAACGCAAGGCTGCATTGGATGCAATGTCATCTTCTTGGGGTTGTTCCAGAGAATATTCCACATCAATATCTACGATAACGCCCAAATAACCCAGAAGCTTGTGACGTACTTGTTGGCCGAGACCGAATTTGCTGGCAATAATCATAGCCACCTCCAAAAAAACCTTGCATTGATACTGAATATGAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTAGTTGAAGTCATTTTCTTGCTTTAATAATTGCGAGAGCGACTTCACCTAATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //