Array 1 187964-185858 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAJ010000001.1 Salmonella enterica isolate 1942_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187963 29 100.0 32 ............................. AGAACTTTGCGAATCAGGTAAATGCCCGATGG 187902 29 100.0 32 ............................. AGTGCAACGCTCTGAGTGCTGACGTGACCCGC 187841 29 100.0 32 ............................. TCTCATTAATTCAACTCCTTAACATGAGTTAA 187780 29 100.0 32 ............................. ATAGATTAGCAACAATACATATATTGAATAGA 187719 29 100.0 32 ............................. CACTCGATCATTAGTTACTAAAATATATAATA 187658 29 100.0 32 ............................. TACAATATCAACCTGTTAATGTACAAAACGAT 187597 29 100.0 32 ............................. TGATATATCGTATAAACTTACATCGTTATATT 187536 29 96.6 32 ............................T TCTGCAATTGTTTATTATATTAACGGTGGCGC 187475 29 100.0 32 ............................. ATAACAGTACCGGCTTCGTTACTTTTGCCAGT 187414 29 100.0 32 ............................. CATACGAAAAGAAATGGAATTATTATTTGAAT 187353 29 100.0 32 ............................. CTGCTTTAATGCGTAATATTGAATTTTTAGAT 187292 29 100.0 32 ............................. TAATTGAAAATGATATAGTATTATCATTAAAA 187231 29 100.0 32 ............................. TAACTCCGGCCCCGTATATACGGGGCTTTTTT 187170 29 100.0 32 ............................. TCGACTTAATAAAACCGGATATTAGCGCACAA 187109 29 100.0 32 ............................. CCTACTGTATATCTGTTCCGATGAGCCGGAAA 187048 29 100.0 32 ............................. AAACAGTATATAATGAGATTATGTCTCAATTA 186987 29 100.0 32 ............................. AATTACCAGAATATGATACATCTGGAAATTTA 186926 29 100.0 32 ............................. ATAGATTAGCAACAATACATATATTGAATAGA 186865 29 100.0 32 ............................. TAAATGTAGGTGATTTAGTAAAACCTTTAGCG 186804 29 100.0 32 ............................. GTACAAGGTGTAGATGTTTTTTTCATATAACC 186743 29 100.0 32 ............................. CCGTCCTCCTGGCGGTTTTTTATAGGGATTAA 186682 29 100.0 32 ............................. TGCCGGGGTTCAGCGGTCTCTATTTTCCTCGC 186621 29 100.0 32 ............................. AGGATTTAATATGATGCCACCGTTCCCATATT 186560 29 100.0 32 ............................. GTTAACATTTAAAAAAATCAATAATAGTTATT 186499 29 100.0 32 ............................. GCGAGGTGCTGGCCGCTGATGTGGATGATTGC 186438 29 96.6 32 .........................C... TTAATTTTTCTTTAGAGTTTTTTAATTTTTTA 186377 29 100.0 32 ............................. AAAACGGCCCCGGCCTGCCTGACTGAAGCGGA 186316 29 100.0 33 ............................. GATTACTCGATCCACACGCTGACGCTGGCGGAC 186254 29 100.0 32 ............................. CTCGGCGTCGAGATAGTCACCGACGTCAGCGC 186193 29 100.0 32 ............................. AGATCCGCCGGGAGTTTGCTGCACAGGCTGCT 186132 29 100.0 32 ............................. AATTTATTCGTCTTAAAAAACCACAGGATAGA 186071 29 100.0 32 ............................. TATAACTATGATTTGTTTTATATTTAACTATA 186010 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 185949 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 185887 29 86.2 0 TAA.........T................ | A [185860] ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGTGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 205587-204522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAJ010000001.1 Salmonella enterica isolate 1942_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205586 29 100.0 32 ............................. TACGCCGGATATATGGCAGCGGCAAGAAATAT 205525 29 100.0 32 ............................. TTAAACAATTCCCAACTCCTTCAGCTAATCTG 205464 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 205403 29 100.0 32 ............................. CTTTAGCGTTAGGGTTAGATTCTCCAGAAGTT 205342 29 100.0 32 ............................. TTTTTCAATCTTGGGAAACTTTACAAACGTTT 205281 29 100.0 32 ............................. GTCTTGAACTGCATAATCATTTTACCCGTTTC 205220 29 100.0 32 ............................. CTGGTTGTAATGTAATATTAAAAGTTAACAAA 205159 29 100.0 32 ............................. ATGATGATTATGATTTTGATTTAGCTGAATCA 205098 29 100.0 32 ............................. TTCTTTGGGCACGATACCGGATGGCGCGCCAA 205037 29 100.0 32 ............................. CGCTGGCGCGCCACTGCATCAGTACACGTAGT 204976 29 100.0 32 ............................. CCCACATTACGCGGGCTTTGTTGGGCATTATA 204915 29 100.0 32 ............................. CGCATTATGCGAACGGTCGTGAAAGAGGCCGC 204854 29 100.0 32 ............................. ATACTGCTTGTCCTGGATTTGCTGATCAATTC 204793 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 204732 29 100.0 32 ............................. TTTTTCAATCTTGGGAAACTTTACAAACGTTT 204671 29 100.0 32 ............................. TATACTCGTTGCCGATCAACGCATATTGATCA 204610 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 204549 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //