Array 1 1547-1152 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBC01000595.1 Nocardiopsis lucentensis DSM 44048 contig_595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1546 29 100.0 32 ............................. GCGCACATCGAGCGGCAGGTAGCGCGCGGTGT 1485 29 100.0 32 ............................. TACGACAACAACGGCACCATCAGTCCCGTAGG 1424 29 100.0 32 ............................. TCGTGCCCGTCCCACCAGTTCAACTGGTACTG 1363 29 100.0 32 ............................. GCGACGATCCGGGGGGCTTCTCGCAAGCTCGA 1302 29 100.0 32 ............................. TCGCTCGCCCGGTCGACCGCAGCCTGGAAGTT 1241 29 96.6 32 ............................G TAGTACCCGGCCGGCAGCGGGTAGGCGGGAGC 1180 29 89.7 0 ............T...........A...G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TGGCTGCCGCTGGGCGCGCTCGCGGCCTTCGGGTTCCGGGTGTCCGTGACCCACAAGCGAGCCCGGGCCGCCGTAGCCGAGGAGGGAGCCGGTCCGACCGGGGAGTCCAGGGCGGACTGACCGCGGTCAGGAGTCCCAGACGACGAGCGGCCCTCCCGGGTCAGTGCGCCTGGCCCCGGGGCGGCGTGTCGCGCAGCGCGGCCTTTGGGCGGACGACGAGGTCGCGGGCGAAGGCGTCCGTGTCCTGTCGGCGGAAGACGTACAGCCAGACGAACACCGGACCCATGATCAGTGAGTGGGTGAGGGCGACGTCCGGTGGAGCGTCGAGTTCGCCTCGCGCGGCGTGAGGAGAGGATGGTTCTCGCTGCCCCGGTGTAGCCTCGCCGGAAGCTGGCTCCGTCACCGCGTGAGGGGAACGGGGAAGGACGCGTGTGGTGTCCGGTTCTCGACAACGTGCGGATTCGAGAGGGTCGCACGAGTAAAAGGGCAGGTCAAGAAGC # Right flank : TCGACCGCGGCGCCCACATACGCCCGGGGGCGTACTCACCAACCCCCGGGCGGACTCATGACCGCGCCACTCACGCTCACCAGGCGCGAAACACGCCGTAACACGGGGAAACGCAGGTTTCACGGAGTGACAGGGCCGACGAAACACGCCCTTCCTACCGTCGGGCCCCATGGACACATCGCTGTATACACGGCCCGGCAGGGGGGCTGAGGGCACAGCCACGTCGCGCCGGGACCAGGTCTACGCCCTCATGCGCGAGGAGGTGCTGAGCGGCCGGATCTCCCCCCACACCCGTCTGGGCGAGGTCCGCCTCGCCGAGCACTTCGGCGTCTCCCGGACCCCCGTCCGGGAGGCCCTCGCCCGCCTGCACTCCGACGGCCTCGTCGAGCGGCGCGAGAACGGTTTCTACGTCACCGTCCCCAACCTCGCCGAGCTCCGCGACCTCTACGAACTCCGGGTCACCCTCGAACTGCGCGGCATCGCCCGTGCCATCGAGGACC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 618-283 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBC01000644.1 Nocardiopsis lucentensis DSM 44048 contig_644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 617 30 100.0 31 .............................. CCTCCGGCGTATTCGTGGGCTGCGCGAGCAT 556 30 100.0 31 .............................. CGTGACCGGTCACGGTGTCGCCCCACCCCGC 495 30 96.7 31 .............................C CCGACGACGCCCTCGACGCCGTCGTCACCCA 434 30 100.0 31 .............................. TGGCCTTGTGCCCCGACCACATCGACGATGC 373 30 96.7 31 .............................T GCTTCGCGGCTTCGGCGCTGCTGGCCGAGAC 312 30 86.7 0 .......................C.G.GA. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGCCGGCGGGTTCTGGG # Right flank : GTCGTTCAGGTGCGGATCGCGTCCTGCCGGGCCTGGAGTACCAGGTCACGGTAGGGCAGTGACACGAGCGGCACGGTGTCACGCCGCTCGGGGCCTCGACGTGCCCGTGCTCATCGCCCACACCCTCCGCAGGTGCGCCCAGGGCTGAGTCGTCAGCGCAGGGACATGCCCTTCTCGGCGAGCGTCTCCTTGAGGATCCGCACGGCCTTCGGGCCGACGCCGTGCAACGCCAGCAACTCCTTCTCGCTGCGCGTGGCGACCTCCGCGAGCGTGCCGAGCCCGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 181-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBC01000645.1 Nocardiopsis lucentensis DSM 44048 contig_645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 180 30 100.0 31 .............................. CATCCACCACGGGCGGAAGGATCGGGATCTC 119 30 100.0 31 .............................. GGTACGACCCCGTCCCGCTGGCGCGCTGGAT 58 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CCCGGCGAGTGGGTCGTGCAGGTGCTCCGGGTCAGTTACTCGACCGAGGACGTTCCGGTCCATGCCCTGGAGACGATCTGTGCCGCGTCGCGGCATGTCTTCCCGATCGGTCAGGTCGCGGGTTCCGATCAGTTCTGACAGTGATCGGGGTGGCCTCGGTAGTGCTTGGGGTCGTGCTCCGCCAGAGGAGGGGTTCTTCGATGGATATGGTGAACGGCTGGTAGAACTGGCGGAATTCCAGTTACAGCGGGGGTTCTGGGGAGAGTGTGTCGAGGTTGCTGTCCTGCCTGGTGCGACAGCCGTGCGCGACACGCAGAACCGGGAGCTGGGGAACTTGGCGTAGCCGAGTGCGGAGGGGGTCGGGCTTCTTGCCGTGCTGAAGCCGTGAGCGCGTCGGACGGTGTTCTTGTGCCTGAATGAGGCAGGCGGGGCGAATGTCTGTTTCTTGGAAACTTGCAGATCTGGTGGTGCTGGCCGGATAGAAACGCAGGTCAGGAAGA # Right flank : TGTCGCCCGCACCTGCGCCAGACGCCACA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20-354 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBC01000682.1 Nocardiopsis lucentensis DSM 44048 contig_682, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 20 30 96.7 31 ............................T. GGTCGGGGTCGCGCATGGGCCGGGAATCGAA 81 30 100.0 31 .............................. CCTTGCTGTGCGGCTTCTTGTGGCGCCGCTC 142 30 100.0 31 .............................. AGGTCGAAGGTTTCTGGGGAGCCGCCGTCGC 203 30 96.7 31 ............................T. CGGGAGCCCTTCTTCATCCACCCGAGCTTGC 264 30 100.0 31 .............................. TCTTGAGGTCGACCAGCCACAACCCGGCGGG 325 30 83.3 0 .....................G....GGGT | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.1 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGCCGGCGGGTTCTGGGCC # Right flank : TGCGGGGCCCCGCGGGAGACGTCCGCCCTCGACACGGGCGAGTGTCCGACCGCTTACCTAAGCTCGGCGACATGGCTATTCACCGTATGGACAACGTCGGTATTGTCGTCGAAGACCTCGAGGTCGTGACCGCGTTCTTCGTTGAACTCGGCATGGAACTGGAGGGTGAGGGACGGGTCGAGGGGCGGTGGGTGGACCGTGTCGTCGGACTCGACGGTGTCCGAACCGACATCGCGATGCTGCGGACCCCGGACGGCCACAGCCGGATCGAACTGATGAGGTTCCGTACACCGACGGCGGTCGCTACCGAGCCGAAGAACGCACCGGCGAACGCGCTGGGCATTCGTCGTGTCATGTTCGCCGTCGACGACATCGACGACGTCGTGGCCCGCCTGCGCGCCCACGGTGCCGAACTCGTCGGCGAGGTCGCCCAGTACCAGGACAGCTACCGGCTCTGCTACGTCCGTGGCCCCGAGGGTGTCATCGTCGGACTGGCCGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4416-6217 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBC01000900.1 Nocardiopsis lucentensis DSM 44048 contig_900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4416 30 96.7 31 .............................T AGCTCCCAACCCGACCCAAGGAGAACACGTG 4477 30 100.0 31 .............................. TCTTGACGACCCGGCCGCGCATCACTCGGAC 4538 30 96.7 31 .............................T CCTCGGCCCACGCCAGCACGCCCCAGCCGAG 4599 30 96.7 31 ............................G. CATCACCCCGTGCGGGCACGGCGTCTGGGAT 4660 30 96.7 32 .............................A GCCGGTCCTCAACGCGGCAGGCGATCAGGACA 4722 30 100.0 31 .............................. GATGCGCCCCGAGGGCTCCCGGTGAAGCATC 4783 30 96.7 31 .............................T CTGCTCCGACTGCCCCGTGCAGCGGGCTTGC 4844 30 100.0 31 .............................. TGGAGGACATCCGTTGGTGACCGGTTCTTGA 4905 30 100.0 31 .............................. CGCCCGTAAGGCAATGCTGGCGTAAAAGCCA 4966 30 100.0 31 .............................. CCTCAACCACGGCCGCGGAGTCCTCGGCCAG 5027 30 100.0 31 .............................. TGGGCGAGTCCGCGAAGGAGGCCCGTCGTGG 5088 30 100.0 32 .............................. GCCCGCGCTTGGCCGGAGAGAACGGCCAGTAG 5150 30 100.0 31 .............................. GGGCGAAGCGCAGGAAGTCGCCGTCTGGAAG 5211 30 100.0 31 .............................. GTGTCGTAGTACACGGCGCCCGACAGGCCGT 5272 30 96.7 31 .............................C GCGCGCGCAGGTGGGCGAAGCCGACCCACAG 5333 30 96.7 31 .............................A CCCCGAAGTAGTCCCGGTGCCCGGACGGCTG 5394 30 96.7 31 .............................T CGGCACCCTCATCCGGTACGCCCACGCCCTC 5455 30 100.0 31 .............................. TCGGCCGCCCCTGGTCATCGAGGGGGAACCA 5516 30 100.0 31 .............................. TCAGCCCCTCGGGCACGTCGTAGGCCAGGTT 5577 30 96.7 31 .............................C TGGAGAATCGCCAGACGCCGACTTCCTTTGC 5638 30 96.7 31 .............................A GCCAGGAGATGAACATCGCGCACCAAGGTGC 5699 30 100.0 31 .............................. GCTCGGCGTCCTCGTCCTCCTCGATGGGCTT 5760 30 100.0 31 .............................. GGGGGTGACACCACGTGGCGTTGCGGGTTTG 5821 30 96.7 32 .............................C CCCAACGGCGCGAGAGCAGACAGCCCCCACGC 5883 30 96.7 31 .............................A CCACCCCGCGCTCGGCTAGATGGCGCACAGC 5944 30 100.0 31 .............................. AAGTCCAGCCCGTAGGGGAAGCAGATGTGCA 6005 30 96.7 31 .............................C GATCCCGAATCGTCCACCACGCAGCCTCATC 6066 30 96.7 31 .........A.................... CGTCCGCGCTCAGCCACAGGTGGAACCGGGG 6127 30 96.7 31 .................C............ ACACCGAGTAGTACGACGCGTTCCCGGCGGT 6188 30 93.3 0 .........................GG... | ========== ====== ====== ====== ============================== ================================ ================== 30 30 98.1 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGAGTACGACGCGTTGAGCGGCGACGTCCAGCCCTCCCCGTGGGATCCCGCTCTGGCGGAGGCGATGGCGCGGCACCAGCGCATCGTCTACGAGGAGTCCGTGGTCGACACGCTCCTCGGCGACCTCGCCCGCTGAGACCGGTTCGGCGCCGCAGGGTGCCCGACCCTCTCAGACCGGTGCATAGCTGTGCTTTCGAGTGGTGAGCCCCCGGCGGGATTCGGACTTGAGGTCATTGGATGAGAATTCCGGCGACCTGGTGTTGCCACATGTCATTTCCCGCTGCTTCGTCGCGTCCTGCTGAGGGTTTTCTCCGGGGTGAGGTTGTCGGTTCGTGGATGATGTGAGGTGGCCGGAGATGGGTGGGCCCTAAGATGATGACGGGGTTTCGTGGCTGATGGTGAATTGTGCGCGCCTGTGTTCAGTTTCGTTTCTTGTGTCTGGTTTTCAACAACTTGCAGTTTCGGGCTGCCTGGGAGAGTAAAGGCGCAGGTCAGGAAGA # Right flank : GTCTTCCCAGGCAGAGGTGTTTGGGGAGGCGGGCCTTCTTCAGGAGGGTGGCCGGATGTGGCCATGTGGGTGGTTTTCGGTACCCAGTGCTGGGTGCTTCGATTGGATGTCCGCGTGACCGGACCTTCCTCTCCCCACCCCTGGCCAGGCAATCTGTCCCGCGCTGCCCGCTCGGTGTGGGCCAAGCACGACCGGCGTTCTGACGGCTGGCTGCCGCTGTGGCGGCACATGGCTGACAGCGCTGCTGTCGCGGGTCGACTCTGGGACCACTGGCTCCCCGACCAAGTGCGTCGCCATATCGCCGACGCTTTGTCAAGCGGAGTCGACAGCGCCCGGACCCTCGCGGTGTTCCTCGCCTGCACCCACGACATCGGCAAGGCCACTCCCGCGTTCGCCTGCCAGGTCGAGGCGCTCGCCGACCGGATGCGGCGTCACGGCCTCGACGTCCCGCTGGAGAAGCAGATCCGGCAGGACCGCAAACTCGCCCCCCACGGGCTGGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15737-15949 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBC01000900.1 Nocardiopsis lucentensis DSM 44048 contig_900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15737 30 96.7 31 .............................A CCCGCCGGTTCCACATTGGGCCGGAGCGCGA 15798 30 100.0 31 .............................. TCGCCTCGGCGGATGTCGCCGGAGCGCTGGG 15859 30 100.0 31 .............................. GGTGGTCCTGCGCCCACCCGCGCCACAACGG 15920 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 98.3 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CCGACGAGGGTGTGGACGTGGTCGGGGGTAGGAACTACGGGGTGGTCTGGTGACGGTCATCATTCTGACGACATGTCCGGTTGGTTTGCGCGGCCTGCTCACCCGTTGGCTACTGGAGATCTCCCCCGGGGTCTTCATCGGAGGGCCGTCCGCGCGTGTGCGGGAGGTGCTATGGGGCGAGGTGCAGGCGTATGCGGGCCACGGCCGGGCCCTGCTGGCCTACTCGACCAACAACGAGCAAGGGTTCACCTTCGAGACGTTCGATCACAAGTGGAAACCTGTGGACCACGAGGGGATGACGCTGATTCAGCGCCCGCTGGCGAAGGGGAGCGACCAACCCGTTCGGGTGAAGAAGGGCTGGAGTAAGGCGTCGAAGCGTCGACGTTTTGGGCGATGATGAGGGTTTGTGGGTGAATTTGGGGCTGGTGTTCTTTGTGTCTGATTTTCAACAACCTGCAAATTCAAGCTACCTGAGAGAGTAAAGGCCCAGGTCAGGAAGA # Right flank : GGTGGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 578-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBC01000965.1 Nocardiopsis lucentensis DSM 44048 contig_965, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 577 30 96.7 31 .............................T TCTCCGCCGCCTCGACGCCCTGGAGCTCGCC 516 30 100.0 31 .............................. TCACCTGTCAGGTCGGTGAGGATGGCCGCGT 455 30 100.0 31 .............................. GGCCCTGAAGTGGGAGGAGGGGTCGGTGTCA 394 30 96.7 31 .............................A CTCCGGGCTGTTCTCCGTGCAACTCCAGCGC 333 30 96.7 31 .............................A CCCCTTCGTCGAAGCCGGTGGCGTCGTCTCC 272 30 100.0 31 .............................. CCGACCGCCGCCAGCTCACCGAGGAGCAGCG 211 30 100.0 31 .............................. CAAGGTCGTTGCGATCGACCACGAGTTGCAT 150 30 100.0 31 .............................. GCGCGTACACCGGCACGGCGGGCCCCGTCTC 89 30 96.7 31 .............................T GGGTTGTCTGGACGGCCGGCGGGTTCTGGGC 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== =============================== ================== 10 30 98.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCACGCGGGGATGGACCCAGGTGGCCGCTGGCCACTGCCGCCGACAGCG # Right flank : C # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5627-4795 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBC01000696.1 Nocardiopsis lucentensis DSM 44048 contig_696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 5626 35 100.0 38 ................................... GACAGCTAGCGTCGGTGTTTCGGAGCTGGAGCCGAGGC 5553 35 100.0 37 ................................... CCCAACAGGAAAGAGTTCCCCGAACCCGAAAGGAAGC 5481 35 100.0 37 ................................... AAGAATCAGATTCTCGCGGGTGAAGAGTTGATCCGGC 5409 35 100.0 37 ................................... TCCTGCCCGGCACCGAGCGGTGTGGTTGACGGCGAGT 5337 35 100.0 38 ................................... GTCGACTTGGACGACGGTCGGCGGCGCGTGCTCGCGGT 5264 35 100.0 38 ................................... TTCGTTGGCACGTCCATGGCGGACGTGGAGCAGGGCGT 5191 35 88.6 37 ............AC...A.......C......... ACCCGGCAGATGTGCGCGATCGACCCGGCTGGATGGT 5119 35 80.0 37 ...........TACG..A......CC......... ATGGCCTCGCTGATGGTGTAGACGCTGACGTCCCACT 5047 35 82.9 37 ..........T.AC...A.......C.A....... GTCAGGTGCAGGGCGTAAGGGCACGCCGGTTCCCCGT CC [5044] 4973 35 80.0 38 ............ACG..A......CA....A.... TGAAGCTCTGCATCACGAGTGCACTCGGTGCGCCCAGT 4900 35 91.4 37 .............C...A.......A......... TGTTTTCTGGGTGCGCTGCTCGTATATCGGCGACAGT 4828 34 82.9 0 ...........TAC-..A.......C......... | ========== ====== ====== ====== =================================== ====================================== ================== 12 35 92.1 37 CTCAACGGCTCCGAAGGGGCCGTCTGCGTTGAAGG # Left flank : GAACAGGTAGGGGGACCCCGCGAACTCGCCTTCCTCCTGGGACTGCGGGTAGGAGGGCGGGAACACCTTGTCACCGGATGCGGGGCGGTACTCGGCTCGCACGGACACACCCGCCCAGGGGCGCTCGGGCCCCACCGCAGCCAGCAACAGGTCAAGGGCCTGGCTCGACATCATCGTCTCCTTCGACAAGCAAGAGGGGTTGTGCACTTGTGATGGCGGTGATCAGCGGAGTGAAGGGGTGTTGCTCTGGTGTGGGTGGCACCGCTGGGCACGATAGAAGACGGGTGTGACATTCCGTAGTGCTAACCTGCCGATCCGACACCAATGACAGGGAAGGAGGCCCATGCGGGACAGCCTCAGAGTCGATCAGCGCGAACCGGAAGTGCTCGTAAAAACCCTGAGAGGTTCCCAAGCCCAAAACCACCCAAAACTCGCATCCGGTGAGCGGTCTCGAGACTTTAACCAGAACGCTTTGCACATTTTCCCTGTTCAGGTGGTGC # Right flank : TACGACACCGGCTTTGGTGCGGCACCGTCTCACGCATCTCCACGGGCGTATCCGCCCGTCCACCTTGAAGCGCCGAAAAGCTCGAAACTCAAGTAGGGCGAACTACGGACATGAAGCGAGCAGAGTAGTACGGGCTGTTAACGGGTTCGACGCGGATGGTCGTGCCGGTACGTGGGGCGTTGACCATCTGGCCGTCACCGACGTACATCGTCACATGGGAGGGCGCACCACCTGGACCGCCGGTGTCGTAGAAGAGCAGGTCGCCGGGGGCGAGGGCGTCGAGGGAGACTGGGGTTCCGACGTGGACCTGGTCGGTGGTCACACGCGGGATCGATACCCCGGCGGCACGCCAGGCCATCATGGTCAGGCCGGAGCAGTCGAAGGCGTGCGGCCCCTCGCCACCCCACAGGTAGGGCTTGCCGACCTGTTCCAGAGCCCACTCGGCTGCTATGCGCCCCTGTTCGCTGCCCCCGGCAGGCACCGCATACGATCCGGCGTCG # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAACGGCTCCGAAGGGGCCGTCTGCGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //