Array 1 3532292-3531028 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT838813.1 Aquiflexum balticum DSM 16537 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================== ================== 3532291 30 100.0 36 .............................. AAAATGTTGGCATACTTCGGAGATCGGATCATCCAG 3532225 30 100.0 36 .............................. CTGAGAAAATATGTACTTAGTGAATAGAAGTCCGAT 3532159 30 100.0 36 .............................. AACATCACCTGTATATAAAATATCCTCATTTGTCAA 3532093 30 100.0 36 .............................. GAGATTGAGAGCTGCAAACACTGTAGATAATTGGAT 3532027 30 100.0 36 .............................. AACTCTTCTGTAAGCTGTTGGGCTGCCTCCCATACT 3531961 30 100.0 36 .............................. ATATTCAATTATAGCCGAAGGTCTGAATGATGCAGG 3531895 30 100.0 36 .............................. AAGATTACGAATATCATTTTCATCATCAACAGCAGG 3531829 30 100.0 36 .............................. TTTCCAAGCGCAGAAGGAGGTTGTACGATTAATACA 3531763 30 100.0 35 .............................. TGCAGGAGATGCGGGCACTTGGTGACCTGGCATCG 3531698 30 100.0 84 .............................. TATCTCCCGACTGTGAAGCTCTGATTCCAAATTCTCCATTAATTGAAATTATCTCCCGACTGTGAAGCTCTGATTCCAAATTCT 3531584 30 100.0 36 .............................. TTGCCACATAGAAGTAGATCCTGTGTACTCGTAGTA 3531518 30 100.0 35 .............................. TTAAGTATGGCGGCATTTTATCCATCCTTGCGATC 3531453 30 100.0 36 .............................. CAATAAAGTCGGGGGCTATGCTTTCTGGATAGTATG 3531387 30 100.0 36 .............................. CGGGTTATGCGGCAAATGCCCTGCGGTCGCCGCGTT 3531321 30 100.0 36 .............................. AGATTTTAGCCGCCGCCATCCACAACAAGAAAAGCG 3531255 30 100.0 36 .............................. AGCGGTGATCGGGTATGAATCCGAGGCCTTCCAGAT 3531189 30 100.0 36 .............................. TGATACGGGGGTAGAAGTCAATGATCTGAACTTCAA 3531123 30 100.0 36 .............................. TTAAATGTGTACTCTCTCTTGTAAGTTCCTCCGTCT 3531057 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ==================================================================================== ================== 19 30 99.8 39 CCATTAATCGCACCATAGAGGAATTGAAAT # Left flank : ATCAAAGTAGCAATTGATTATTCCAAATATCAACTGGATGCCAGATGGGATGGGCTGAAAGGATATCTTACAAATACTGATATGAAAGCCAGGGAGGTTATTGATGCATACGGAAACTTGTGGCAAATAGAAAAGGCTTTCCGGATCAGCAAGACAGATATCAGAATACGGCCAATCTACCACCGAATACCGGAAAGAATACAAACACATATCTGTATCTGTTTTGTGTCTTATGCTGTATTTAAAGAAATGGAAAGACTTCTTAAAAAACGGAAAGTATCATTTTCTGCAAACAGAGCTATCGAGCTTACCAAAAACATGTACCAGATAAGGGTATTCCTTCCTGATTCTAAAACCTATACAACAGTTCCTCTCAAACCAACTCAGGAACAACAGGAACTAATCTCTGCAATCATGAAAACTTAGCTTGGGTGTCCCATCGCACAAAACAGGAGGAATTGAAATAGGAATGTGCAAGGATGGTTTTGCCACTTACTACA # Right flank : TATACTTAAAAATTAAAGAATACAGACTTATTTGGTTTAGATTTCAAATCAGCGGACGACTAAACAGATGACAAACAAGGGTTTTCATTTCAAAATAGTTTCAGAAGATGATTTCAGGTGGATGTTGGATTTGGAGGGGTAGAAACATTTTTTTGAAAAGATCAATATTGCATTAACACTTATTGCCCTGACTGATGAATTTTAAGACTTTGTCTATTTGGATAAACTGTTTCCTGAAGGAATTAAACTTTAGGATTTGAAATTGAAGGGGTTGGTGATAAACCATGGTTGATAGAAATGGAATAATGGGGAAAACTTAATTACTCCCAGAAGTCTAGATTTAACTATCAGTTTAATAATTTGAAACAAGCGTTAATCAAACTTCATTGGAACTTTTGCCCCATAAGGAATTATTTTCCCTTCCCAATAAGGCATTCCATCAATCATTTCTATCAGTCTCGTCTTACTGCCAGGTGCCGGTTTTGCACTTTTTGGCAAAT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATTAATCGCACCATAGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 3540880-3534009 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT838813.1 Aquiflexum balticum DSM 16537 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3540879 30 100.0 36 .............................. ACTCCTGCAGCAGCTGTCCACCTGTTCTGTGTCGTC 3540813 30 100.0 35 .............................. TATTCTCTGGCTGTTGCGTAAAGCCATACCTTTTC 3540748 30 100.0 36 .............................. TTGGCAATGTGCAACCGGTCAATGGATATCAACAGC 3540682 30 100.0 36 .............................. TTGACTGTGGAATGCTGCGGATTCCTTGTCAGTAAA 3540616 30 100.0 36 .............................. TTATCTCTGATCGTTGACATAAAGGTTTTCCAAATC 3540550 30 100.0 36 .............................. GTAATTATTCCACTTGGAGACATATCACCCCATCCA 3540484 30 100.0 36 .............................. TAATGAAGGTAAATTAGGTGGTTTCCATCCAATTTG 3540418 30 100.0 36 .............................. TATATTGAAGGATTTATCGCCTACACCTACATTATT 3540352 30 100.0 36 .............................. AAGATATTGCCATATTGGATGCATTGACCGTATGGC 3540286 30 100.0 36 .............................. CCTTTAACACCTGAACTCTTAATATCGGCAAGAACG 3540220 30 100.0 37 .............................. TGGTATCAATGTAACTCAATTCGGGGTAAGTTCGACA 3540153 30 100.0 36 .............................. AAGGATACATAATTTACAGTACCTATGAATACGATA 3540087 30 100.0 35 .............................. AAGATCGAATGAATCAAGCGAATCTATAATCAAAT 3540022 30 100.0 35 .............................. TGGTGTACATTGGAATAATGAACCACGGGATGAAT 3539957 30 100.0 36 .............................. TTATTTCCCTCCCTAAATATCATGTATCTCTCAGGA 3539891 30 100.0 35 .............................. ATAGGTATATCACTGCTTAATGAACAATGTCCATA 3539826 30 100.0 36 .............................. TTGGCTTTGTTTACGGATGCCGTTATTCCTGAAACC 3539760 30 100.0 36 .............................. AGATGTGGCAATTGGGTGGGGTACTTTGGGACGGTT 3539694 30 100.0 36 .............................. GCATGAGTACCGCGGCTTCATGGATAGGATCTGTCA 3539628 30 100.0 36 .............................. GAATATCAGGGGAAAATCTTTTTTGTCCTTCTCGTT 3539562 30 100.0 35 .............................. TTGGGATCTGCAATGAAGTTTTTGTACAGTACCGG 3539497 30 100.0 36 .............................. AGGGAATTAGTGCTTTTAGCCCTTTTCGGGCTGTTT 3539431 30 100.0 35 .............................. ATTATTCATGAAACGATTAAGAAAATATCATTATG 3539366 30 100.0 35 .............................. GGAGCAAGTATTGCATACACAGTCAAATATATCAA 3539301 30 100.0 36 .............................. TTAAAAGAGATCCTTCAAAGGTATACAAGAGGTCAA 3539235 30 100.0 36 .............................. ATTGTTTTTTGCAGGAGAATTGTTTGGTCTACCATA 3539169 30 100.0 36 .............................. CAGAAAAGCTGGGGATCAACATCTATCAATACCTGG 3539103 30 100.0 36 .............................. ATATGACCAACCATGTAGGGAGGCATTCTTTTGCTA 3539037 30 100.0 36 .............................. TTTAATTTTACGATATGGACAACATAGAATTACAAT 3538971 30 100.0 35 .............................. AGGAATTCAGAGACACAGGAAAATCGCAAGACAAT 3538906 30 100.0 36 .............................. AAGATGCCCTGAGATTGCTGGACCGCCTTGATCACA 3538840 30 100.0 36 .............................. TAGAGTTGGGGTGAAAAGATCCTTTGGATGATTTCA 3538774 30 100.0 36 .............................. AGAGATGCCTGGGCGAGGTAGTGCCGGTTTCGGAAG 3538708 30 100.0 36 .............................. AGTTCCCCTGTCAGGTAAGCATTATCAGAAAGCAAA 3538642 30 100.0 36 .............................. TTTCTTTACTTTGATAATGTTCCAATCCCAATAATT 3538576 30 100.0 36 .............................. AAGTTTCGATGGCATCTACTTTGGTTTTATCAAGCT 3538510 30 100.0 36 .............................. ATGGAAAGAATTGGGATGAGTTGATGACGGAAAATA 3538444 30 100.0 36 .............................. TCAGTAGAGTGGGAAGTAACGGATATCCCCGAGGAA 3538378 30 100.0 35 .............................. TAGATGACTGTGAGTTTTTTTGATTTGATGTACTT 3538313 30 100.0 36 .............................. TAAGTAACCATCACATGAATCCAAGTGTCTGCCACA 3538247 30 100.0 36 .............................. AATATCTGATCAATTGACTTGTTTACAGATAGTTCG 3538181 30 100.0 36 .............................. TCGTATTCCCCAAACACATCTTTACCGCCAAGTCCA 3538115 30 100.0 36 .............................. TGAAAGAATTGAGGTATTGACCGAAGCTGAATTAAA 3538049 30 100.0 36 .............................. ATGAATCATCATTGTACCATTTCCTGATTTGCCTTG 3537983 30 100.0 36 .............................. GGTGCAAAGGTTATTCTGATCATCGTAGAAGTCTAC 3537917 30 100.0 36 .............................. AGTAGAACGCATTTTTAATAATATCCTTACTGAAAT 3537851 30 100.0 36 .............................. TCATAAATCTAGATGCATAAAGATGTTCATGTTCTC 3537785 30 100.0 36 .............................. AAGGAAAAGACAGGCAAAGCGGTTACCAAAAAGATC 3537719 30 100.0 35 .............................. TAGACAAACAATGGATTGAAAAATATGATAATGGT 3537654 30 100.0 36 .............................. AGAAAAGACAAGGATACGGGAAACTATCCAGCACCA 3537588 30 100.0 36 .............................. AGGGAAACAGTAGCCTGGACAGGTGATGTATGGCGG 3537522 30 100.0 36 .............................. AAAATTGAAAATAGAATCATTTCTTTGGCTTTTATT 3537456 30 100.0 35 .............................. AGTGCGAAGTGGTAGTATGTTTATGTTGCTTTTCA 3537391 30 100.0 36 .............................. CAAACCCAAACCTTACAGTCTTTCTTGGCTTTCATC 3537325 30 100.0 36 .............................. CAGCTACGCCTACAACTGGGTATATCACCCCGGCAT 3537259 30 100.0 35 .............................. TCAGTAGCCGTTGTCAATCCGACTACAGGTCAATT 3537194 30 100.0 36 .............................. GTCCCTGTTCCAAACTCAACATAGGGCGCATAATTC 3537128 30 100.0 36 .............................. TTAGTTTGTATAATTTCATCTTCTGGATGGTCGCAC 3537062 30 100.0 36 .............................. ATTTAAAGTCGGGTGTTTCTGTGTCCGACATATCGA 3536996 30 100.0 36 .............................. TTGGAATGAATGCAGTATTGGTGGGAGCCTGACGTT 3536930 30 100.0 35 .............................. AGTATTCCAACATTTTATCAGCCTGCCATTTGAAT 3536865 30 100.0 36 .............................. AAAGAAAATGTACCTGATGAAGCATGGAAAAAAACC 3536799 30 100.0 35 .............................. ATTAAAGGTAAGCGTTAAACCTTCCTCATATCCTT 3536734 30 100.0 36 .............................. TCAGAAGGCAGAAAGGCTATTCCGCTTTTGAACCAC 3536668 30 100.0 36 .............................. ATGAATGAGCCAGAGGCTTTGACATTAGGTGTCTAT 3536602 30 100.0 35 .............................. TGCACGGAAATTGATGCATGTACCTGTGGTCCTGA 3536537 30 100.0 36 .............................. GGTATTTGAATACGATGCAAGTAATACGGTAACTTT 3536471 30 100.0 36 .............................. GAACAACCAAGAAAGAAATGGGCTAAGAAAAGACGG 3536405 30 100.0 36 .............................. TCGCTCAGAATGTATCTGAATACAACGATAAAAACG 3536339 30 100.0 36 .............................. TGATAGCATTTCCACACAGCAACCCAAAATTACAGG 3536273 30 100.0 36 .............................. AAGCAACTTTGGAAACAAAGGTGCAGGAACTTGAAG 3536207 30 100.0 36 .............................. CAGGTAAGATCGTAACCGCATTTATGCAATAACACC 3536141 30 100.0 36 .............................. ATCAGAGAACAGCTTGGATTGGCTCCTGAGTATACT 3536075 30 100.0 35 .............................. TGGCCAGGCGATGCGCTTCACGCTTGCCGGTGGCG 3536010 30 100.0 35 .............................. TCAAATGAACTTGTTGCAGGATCGTAAAACTCCAA 3535945 30 100.0 36 .............................. TTAAGAGAAAAAATATCATTTATCCGTATCACTCAA 3535879 30 100.0 35 .............................. AGTGTTGGAGAAACATTAAAGATTCTTTGGCTTCC 3535814 30 100.0 35 .............................. TTGCTCGACATAAGCCAAAGCCTCTGCTGCTGTCC 3535749 30 100.0 36 .............................. GAAAGTAAAGCAAAATATTTAAATGAATTTGGTACG 3535683 30 100.0 36 .............................. TGTAAGTTTGTCCGCACCCAATACGGCTCTTATACT 3535617 30 100.0 35 .............................. AGAGTACAAAGGCATGGATATTATAATCCATTATT 3535552 30 100.0 36 .............................. TTGGGGGATTGTTCTAAATAGTCTTATTGCTTCTTA 3535486 30 100.0 36 .............................. AAGACAAAGAAACCAATTTCATTCCTATTTGATAGA 3535420 30 100.0 36 .............................. CAGACAGGATGGTGTTCAATGAGAAAATGAAATACT 3535354 30 100.0 36 .............................. TGAAAGAATTTGTAATGATATCCTCAGATGACCTGC 3535288 30 100.0 36 .............................. TGATTGCCAGATTGACATTTGAAGATCCTGAAGAAA 3535222 30 100.0 36 .............................. TGTAAAGGGAATGGCAGGTGATATACAAAATTCAAC 3535156 30 100.0 36 .............................. AAGTCAGGTGATAAGCTGTATAAAGCTATTGACGTT 3535090 30 100.0 37 .............................. AAAAGAAGTTGACAAAGCACTTGCAGACATTAACGAA 3535023 30 100.0 35 .............................. TTGAATAATTCACCGTATTTTGCCCGGATATTGTT 3534958 30 100.0 36 .............................. TGCCAAAAGAACAGGGAATCCATAGGGTATATCCAC 3534892 30 100.0 36 .............................. TGTCTTTGTACGCCTGAGCCGCCATAAAAGGACTTA 3534826 30 100.0 35 .............................. TAGAATTATAAATTGCATCAATCCTATTGAGCCTA 3534761 30 100.0 36 .............................. CAGCCTACGGGCGTGCAGCTCAGGCTTACCGTGATA 3534695 30 100.0 36 .............................. AGGGAAAAATTCAAGGAAGTATTGCTAACTCTCAGA 3534629 30 100.0 36 .............................. TTCACAAGGGTAGGATCTCCCTCCCAATCGATGTTT 3534563 30 100.0 36 .............................. TCGAGAAGCTTCAGGCAGAAATTGAAAGCCTGAGCA 3534497 30 100.0 35 .............................. ACAACAGAAACGACATGCAGAAGCTCGCTCTGATC 3534432 30 100.0 36 .............................. TCAATGGCCTTGGTGCGGTCATGATACTTCAATATG 3534366 30 100.0 36 .............................. CCAACTCCGCAGCAGTTGATCTGGTTTTTCTCGATT 3534300 30 100.0 35 .............................. TGAATGAACCAAACTCAACGGGTGGTTCCGGTTTT 3534235 30 100.0 36 .............................. TGAGAGAAGTCAAGGCCATTGACGAAGAAATTGATT 3534169 30 100.0 35 .............................. AGGAATGTGCAAGGATGGTTTTGCCACTTACTACA 3534104 30 100.0 36 .............................. AAAATGTTGGCATACTTCGGAGATCGGATCATCCAG 3534038 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 105 30 100.0 36 CCATTAATCGCACCATAGAGGAATTGAAAT # Left flank : TGTGAGATTTAAAAAAGTGGAAAATGTATGTAATATTAGTATATGATATTGGAGAGAGGCGGGTGGTGAAGATGTTAAAGCTTTGTAGGGAATACTTGAACTGGATTCAGAATTCGGTGTTTGAGGGGGAGATCACGGAAGTCAAATTGAAGGAACTGATCAGCAGGGCAAAGAAGTTTATGAAAAAGGAAGAAGATAGTTTGATCATATTCAAAAGCAGGGAAGAAAGGTGGTTGGAAAAGGAAATCATCGGTCAGGAAAAAAATGACCTGGACATCTTTATTTGAGGATTTGGTTGTCGAAGGGTATTTTTTTTCATCCGATTTCGAAATTAAGCGTAGAGCATTTGACTGAAAAACTTACTTTCACATGCAGGACAAGGGTTGTCGAACCCCCAGTAAAATCAGGTTATTGGAGATCGAAAATTTTAAAAGTGAAAAAAAATGAAAAAATAGGCTTAGATTAAGAAATATGACCTATTTTTAATGACGAGGCCACGG # Right flank : CTGAGAAAATATGTACTCCTGTTTTGTGCGGATATGTTTTAGTTCAAAATTAAGTGATTGAAATATAGCCATTTATTTGCTTTGATTTTGTGATTTTGGGTGTCTCGGTCTATTTTTAGTTCATGTTTGTGAGACGTAAGAAGAATTCAAGTGGTAGTTTCAGCATTCAGATTATCCAGAAAGTTGGCAGGATCAATAAAGTGGTCAAGTCATTCGGGAGTTCCTTTGATGCTGTGGAGTTGGATATTCTTGAACGCCAGGCCCAGCTTGAAATTGAGAGAATTCAAGGCCAGACTTATCTGTTTTCAAATGACCGGGACAGCAGCTTAAAATCCATTCTATCGAATGTAGGCAACAACCAGATCGAATTAGTTGGTCCGGACAACATACTCGGAAGAGTTTATGAGTCAATGGGTTATCACAAAATCGGAGGCGATGATCTATTTAGGGACCTGGTTATGTCCAGGCTGGTTTATCCGGGCTCCAAGCTAAAAACAGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATTAATCGCACCATAGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 4696253-4699723 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT838813.1 Aquiflexum balticum DSM 16537 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4696253 37 100.0 36 ..................................... TAGCAATAGGAATCAGAGCCTCAGCTTCTGTGGGTT 4696326 37 100.0 36 ..................................... TTGGGGCGTTGGCTTATGATTCTGAAGCTGTCAAAA 4696399 37 100.0 38 ..................................... AAATACTATCATGAGCACTTGGGCAGAAACCATATCCT 4696474 37 100.0 36 ..................................... TTCACTCCCGATCAAGCTGAAGCGTATGTTCTTCAA 4696547 37 100.0 37 ..................................... TTCACAGCTGTACAAGTCAGTGAGAAAACGAAATGGG 4696621 37 100.0 36 ..................................... AAAACCATCAGGTTACCATATTCATCGGTGACAGCC 4696694 37 100.0 36 ..................................... TAAGCCGCTTATCGACAAAGAGATCAAAGATTTCCT 4696767 37 100.0 36 ..................................... TCCGCCCCGGAGAGCTGCGCAGGCTCAAAGTGGCCA 4696840 37 100.0 35 ..................................... TAGCAATAGGAATCAGAGCCTCAGCTTCTGTGGGT 4696912 37 100.0 36 ..................................... AGGTCTCCATTTCTTCCTGCATTTCTTCAAGGTCAT 4696985 37 100.0 36 ..................................... AGTGATATTTTGGTCCTGCCCATTGAAGAACATACG 4697058 37 100.0 36 ..................................... CGGTGACGGATGCCAATGGCTGTGAACAGTCTACTT 4697131 37 100.0 37 ..................................... TATGGAGGTGGAGAAGAAACACAGAACGAAACTATGT 4697205 37 100.0 36 ..................................... TAAGTAACAAATCCACCAACAAAAAGACTGTTGTTT 4697278 37 100.0 36 ..................................... CTATCCCTGATAGGTTGGAATTGAAGATCGGACCGC 4697351 37 100.0 36 ..................................... TCTCAACTCCCTCGGTGGATGGGATCATGTACTTTG 4697424 37 100.0 36 ..................................... CGGTCGGAGGGATGACCGCATCCACTCCACCACAGA 4697497 37 100.0 36 ..................................... TCCGCTGCTTCTATGGAGAGCATCTATGGGATCCCT 4697570 37 100.0 36 ..................................... GAATATTGTCGACAACGACACTGCAGGATTCAAAAA 4697643 37 100.0 36 ..................................... CAAAGCAGGCCCTTCACCAGGAGGTGATCGAAGGAT 4697716 37 100.0 36 ..................................... AATTCCTTTGATCTGCTCCAGTCCATCGCACATTTT 4697789 37 100.0 36 ..................................... TAACGGCTCGCAGGTTGCGGTAGTGCCGGCAGGGGG 4697862 37 100.0 36 ..................................... AACCAGTTGAATTGATTATCCTTTTGGTCTTTACTT 4697935 37 100.0 36 ..................................... TCATATCATCGGGCGATGATTTGAACCTAAAGTTTT 4698008 37 100.0 36 ..................................... TCTTTCTGTCAATTTCAAGTAATTGTTCTCTAGCTT 4698081 37 100.0 36 ..................................... GAAAGACTACCATTCCAATTCACTTCGGGCGGCCAA 4698154 37 100.0 36 ..................................... AAAATAGTCCAGGAGAAGTTGAACAAATCAGAGGTG 4698227 37 100.0 36 ..................................... TTTCAAAGGTTTTAAATCTCTTTTTACGATATTATC 4698300 37 100.0 36 ..................................... ACAGGAAGGAACTATCTTCCGGGGGAATGCTTCATC 4698373 37 100.0 36 ..................................... GCTTCATTAGGATTAACTAGAACACATGGAGGTAAA 4698446 37 100.0 36 ..................................... TTGAACACAATCAAGAAAACAAAATCAATAGACCTT 4698519 37 100.0 36 ..................................... TAAATCTTGCCCTGGGTAAATCTATTACCATAATCT 4698592 37 100.0 37 ..................................... CCATTTTCTTGTATTGCTTATCCCAAGCTCGGTATTT 4698666 37 100.0 35 ..................................... TCCCGATAACTATCGGGATGATTTAAGAATGACGC 4698738 37 100.0 36 ..................................... TTGCTTCTGCGGAATCTGAAAAGACTTTAAAAATTA 4698811 37 100.0 36 ..................................... TTGAACACAATCAAGAAAACAAGATCAATAGACCTT 4698884 37 100.0 36 ..................................... AAGGTTTTGATACTTCGTGAAGATGGTAGGCAGGAA 4698957 37 100.0 36 ..................................... GGAAAAGATAATGGTTGGGATTTTGATAAACTAAAA 4699030 37 100.0 36 ..................................... TGTCCTCGAAGTCTGTATAAGATCCCAAAAATTTCA 4699103 37 100.0 37 ..................................... TGATTATCCTGAATTACTTGGGATAAACATTACCAAT 4699177 37 100.0 36 ..................................... CAGTCTTATAGTTACTTACCTTAAGACCTCCTTTAG 4699250 37 100.0 36 ..................................... TTTCTGTGATTACAAAAGTGATAGATATGAAATACG 4699323 37 100.0 36 ..................................... TATATCTCATATCAAACGTCTATTTCAGTCACATTT 4699396 37 100.0 36 ..................................... ATTTTGGTTTACTAAGGCTTAGGCCATTCCCAGTTT 4699469 37 100.0 36 ..................................... CAAATGGTATCCCTGATCCGGAAAGCAGGAATGAGC 4699542 37 100.0 36 ..................................... TGAAATTCTGAACAAAAGCACCGAGTCCAAGACGGT 4699615 37 100.0 36 ..................................... ATTCCTTCATCCGCACTTCGTTTACACGTTGCTCCG 4699688 36 86.5 0 ..-..C...G.........C....T............ | ========== ====== ====== ====== ===================================== ====================================== ================== 48 37 99.7 36 CCTCCTAAGACAAATCCAAAACAACAAGGATTGAAAC # Left flank : CCATGGCCCCGTTGGATTTCAAATTTGCGGAATACAAAGAGCGCATTTTTGAGACTTACAAGCAGCAACTGATTTGTTATGCGATTTTGATTGAGGAGCGATTTGGTAAAAAAGTCAACAAAGGGTACCTGGTCTATGTCAGAAGCAAAAACAAATTGATCGAAGTAAGTATCAGCAATGAGGACAAAAGAGAGATTATGAACAGCATTAGGGATATACAGGAAATAATGGAATATAATCGCTATCCAAAAGCTACGAAATATAAAAAGCGATGCTTAAATTGCACCTATAGGAATATCTGTGTGAAGTAATCCGCTTGGCAATTTATTTTATAATGAGCTAAAACCAATTATTAACTGTTGATATTCAGTAATTTATACAAACGGAAAACCAATAAAAATGAACAAAAAAACGCTCTTTGACATCTTGAAAAACCAAAAAACAGGAAAACAAAAACATCTATATATCATTGATCATAAGGGGATTAAGGCTACTGGCGA # Right flank : CGCTAATTGGGACTTTAAACCCATAGGAATTTTGGAAACTCCCAAACCAAGTCTAAAAATTGGGGATTGGCGAAAATCAATAATTTTGATATGTTGGATGATAAAAATATTCCTAACCCATTTCCTGTTGAGAATGGGTTTTTGATGTAAATTCACGGCGCCATTGACAGCAGAAAATCAGTGGTTTTTTCTTATGTCACTTCATTTCAAAACAGCCGAAACCTATGAGGAATTTGTCGGCATCCTTGATCTCCAGCAACAAAACCATATCAAAAATCTTGATTCCATCGATCAGGGTTTTGTCTTTGCAGAGCACAGTGTTGAGGACCTTGTCAAAATGAATTCATTTGCCCCGCATATCATTGCCAAAGATGAAGACCTTGTGGTGGCTTACATTCTTGGCATGACAGTGGCAAGCCGCTTCGATATTGAGATGTTGATACCGATGTTTGAGCAATTTGATGAAATAGAAGTCAACGGTACACCGCTTTCAGCATATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCTAAGACAAATCCAAAACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //