Array 1 50331-45744 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXNE01000011.1 Acinetobacter nosocomialis strain AB6 D60061-06_R1__paired__trimmed__paired__contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 50330 29 96.6 31 ............................C CAAACTCCTGTCCATGCATTGTGAATCATGA 50270 29 96.6 31 ............................T ACTGGTGCAGTTACATCAACGACTGTACCCG 50210 29 96.6 31 ............................T TGATTGGCATTTTATTACATCTCGAGTTAAA 50150 29 96.6 31 ............................T AGATGGCTTACTTTGCTTGAAAAACATCGTC 50090 29 96.6 31 ............................T TTATGTAGGTGATATGTGATCGCATTCCAAT 50030 29 96.6 31 ............................C CGGCATTGCGGACCAAATTGTACAAAATTGG 49970 29 96.6 31 ............................T TAATCAAAAAATCTGTCTAATTATTTTTGAT 49910 29 96.6 31 ............................C GTAATAAGCCCTCAACGGCAAATTTTGGTCG 49850 29 96.6 31 ............................T GAAAGCTTCATACCAGCCTCAAGCACCATGT 49790 29 96.6 31 ............................T GCTCCAAAATAGTGAAGTAAATATCTGTTAA 49730 29 100.0 31 ............................. AAGTGCAGGCTCTATCGAAAATGATCTTAGC 49670 29 100.0 31 ............................. GAATTTAGGCACAAAAAAAGCACCTAGTTGA 49610 29 96.6 31 ............................T TCTATTGATCCTAGTGTTAATACTGGTCTCA 49550 29 100.0 31 ............................. TAACACCAACCATTTGAACGCCTGGGTTCCT 49490 29 96.6 31 ............................T GTCTGTAGTAGCTGTAATAAGGGTCGCTTTT 49430 29 96.6 31 ............................G CTACCGTGAATCGGACATTATTGATTACGAA 49370 29 96.6 31 ............................G TGTTGAATAGGTAGTCCGCCGACGCCTTTGG 49310 29 100.0 31 ............................. TTCTGGATGTATTTAATGCATGGGTTATTTA 49250 29 96.6 31 ............................T TGCGTAATCATCTCGCGCTTGTTGTAATTTA 49190 29 96.6 31 ............................T AAAAAGGCGGGAGGCTTCTTTATGCGTTCTC 49130 29 100.0 31 ............................. GAAGGATGCGAAATGTGTAATTAAACGAAGT 49070 29 96.6 31 ............................T GAATTAAATAGAGCAATTCAGGAAATTGTAG 49010 29 96.6 31 ............................G CTTAGTGGGTGCTCTTCGTCAAGAGGCTGGT 48950 29 100.0 31 ............................. ATGTACGGCCATTGCCAGATTCGACAACATT 48890 29 100.0 31 ............................. TAAGCAGCTTAGTAAAGCCAACTTTGGATGC 48830 29 96.6 31 ............................G ATTCCTTAATTCGGATTTTTGTTTCGAACAT 48770 29 100.0 31 ............................. CCATGGTTTGGATCAACATCCCCCGTTGTTG 48710 29 100.0 31 ............................. TTAATTAATCATAATACCCATTTATCAATTA 48650 29 96.6 31 ............................C ATTACCATCATATGAGCGCGCAGATGCCTTG 48590 29 100.0 31 ............................. CTATCAATAAGGATCTGCGCAGTTTGTGCTT 48530 29 100.0 31 ............................. AAGGTACAGGCGGTAATCTTGGTCGTGGTGC 48470 29 100.0 31 ............................. GCTTCCGTTTCATATTCTGGAACACCAACAA 48410 29 100.0 31 ............................. CCTGGACCAAGTAAGTGCCCTAGATACTGCT 48350 29 96.6 31 ............................T TTTTGCCCGACAAAAATAAACCCCGCATCTA 48290 29 96.6 31 ............................T TAATTTGCTCTTTACGCTCAGGACTAAAATT 48230 29 100.0 31 ............................. TATACATGGGGTGCTAAGGAAACTGGGTTAA 48170 29 100.0 31 ............................. TTCCCAATTTTCCCAAATTTTAGAATGTAGA 48110 29 100.0 31 ............................. ACACTTTACGGTATGTTGGCCATTGGTGAAA 48050 29 96.6 31 ............................C ATACGACTGCGAGACATAACCAAAAAGCGCC 47990 29 100.0 31 ............................. ATTACTTGTGCTCCGTTATATGCAGCTAACA 47930 29 96.6 31 ............................T ATGGCAAATTTGAAGAAGTTAAGTCTCAGTT 47870 29 100.0 31 ............................. TTTGAACGCCTGGGTTCCTCGCATAAAAAGC 47810 29 100.0 31 ............................. ATGGCCTCAATTAACTGTGTTACAGCCATAA 47750 29 96.6 31 ............................T CAACTGGATCAATCACAACAGCATTGGCACC 47690 29 100.0 31 ............................. ATTAATGCAGCAATTGTATGTGGATTTAAAT 47630 29 100.0 31 ............................. AGAATGGTGACTCTAGGAATGTTCCTTTATC 47570 29 96.6 31 ............................T AAAACTATCGCAGCTGTAAAAGCAATGGATG 47510 29 100.0 31 ............................. AATGATACTGCGCCGATTGCTACATTCGAAT 47450 29 100.0 31 ............................. GAATGGGACAATCCTTCAGGCTATAAGCATC 47390 29 96.6 31 ............................C TTAATTTTCAAACCGAAATCAGCAATACTTC 47330 29 96.6 31 ............................T GATTATCCAAACATCTCAACCATGCACTTTT 47270 29 100.0 31 ............................. AATGCAAATGCACAATCGCCTTCAGATGCGA 47210 29 100.0 31 ............................. CTTCACAAGACATGTATTTGTATCGGAGCTT 47150 29 100.0 31 ............................. AGCTAAATACGCTTTTAGCGGCTCTTAGACA 47090 29 100.0 31 ............................. GAATCGTTCAAACCAGGCGCTTGAGACTCAA 47030 29 96.6 31 ............................T ACCGCAAATCCACCGATAGCAATATTGGAGT 46970 29 96.6 31 ............................T CAAGCAAAAATATACCTTGGTAATCCTTGCC 46910 29 96.6 31 ............................T GTTGAGGAGTGCTTCTATCGTCGTGCTATTG 46850 29 96.6 31 ............................T TAATACACAACAAACTACCACAAGCCCTAGC 46790 29 96.6 31 ............................G ACAACACCGGAAAAGATCTGGAAAGAAATTG 46730 29 100.0 31 ............................. CAGCATTTTGCATATATAAGGAAACTGCTTC 46670 29 100.0 31 ............................. GAAATTTCCAGTTGAGTTTGTACACGGTTCT 46610 29 100.0 31 ............................. GGTTCGTTACCTGATCTGCACTCTTGCATTT 46550 29 96.6 31 ............................T CTTTAATCGACTTGAGTGCAACGCCTTTATC 46490 29 96.6 31 ............................T TGAGATTCTCCCCAACTCAACGCCCGACTAA 46430 29 100.0 31 ............................. CTCTCTTTTAAATAATCCAGAATCATTTAGA 46370 29 96.6 31 ............................T TTAAAAATAGCGACCGTTTGATGAGGTGTCT 46310 29 96.6 31 ............................C ATTCACATCGTTAATAACTTCAAAAGGTGAA 46250 29 96.6 31 ............................T GACACTGAGATTAGATTAGGCGCATTGAATT 46190 29 96.6 31 ............................T TTAATTGCATATGATCGATCACCAGCAGTGT 46130 29 100.0 31 ............................. ACTACGCTAATATCGATATCATCAGAATCAC 46070 29 96.6 31 ............................T CTTCATTTAACTCAAGCTTATCTGCGAATAC 46010 29 100.0 31 ............................. TACATGTATAAAGGTAAACAGCATCATTTAA 45950 29 96.6 31 ............................C AAAACAAATTTAGGTATTGATAAAAATTTAG 45890 29 96.6 31 ............................T TTCGCCAAATCACGCATTACACGCTTAATTG 45830 27 86.2 31 ...AC........--.............. TCCATTCAGTTGTAGAAAGACCGCCATATAA 45772 29 75.9 0 ....G.....A.......A.....ATT.T | ========== ====== ====== ====== ============================= =============================== ================== 77 29 97.7 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGATACTATTGCTGATATAGCCAACAGCTACCTTGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAGTTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGCCTAGTTTTTGACCTAGCGGACCTAGTGAAAGATGCTTTTGTGATGCCACTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATTAAATAAAATCATATATTTAATCTAAGTACCTCTTAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGGTTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTAAATCTTAAAAAGAAAAAACCCCAAAACTTACGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55420-57007 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXNE01000011.1 Acinetobacter nosocomialis strain AB6 D60061-06_R1__paired__trimmed__paired__contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55420 28 85.7 32 ...A.......TTC.............. ACTGATCAAGACCTTTGTCATAACGTTGTGAT 55480 28 85.7 32 ...A.......TTC.............. ATTTAAGAAAGTCTAGTTCAAGAGCCGTGTTC 55540 28 85.7 32 ...A.......TTC.............. ATCATTGCAATTGCTTGACCAAAATCTTCATC 55600 28 89.3 32 ...A........CC.............. CTATTCCAGATCAAAGATATTGTTCAGCAAAA 55660 28 92.9 32 ...A......A................. AAAAGGGAAAGATGTTTTTTGGGCCTGTTCTG 55720 28 96.4 32 ...A........................ GCTGCTATTGCTGCATTGTGGGATGACTACCA 55780 28 96.4 32 ...A........................ AAAACATTGGACAAACCCAAGTCATTGGTAAT 55840 28 96.4 32 ...A........................ CAGTCTTGCATCATTTTCCGTCTAGCCTCTAA 55900 28 100.0 32 ............................ TCAACTTCTTGAGAGTGTTCATAAGATTCTAC 55960 28 100.0 32 ............................ AGAATGGCAAGCGGCTTGCCTACGTTATCGCT 56020 28 96.4 32 .........T.................. TTGTGCAGCGGCTCCACTCTGAACAGCATCTA 56080 28 92.9 32 ............CC.............. AACTTATCAGCCACAATAAAAGACTACGTGAT 56140 28 89.3 32 ...CG.......C............... TGAACCGTCAGTCGGTTTAAAATCAACAGCTT 56200 28 100.0 32 ............................ ATCAAACAAATTCATTGTTAAAGGCGTCGACC 56260 28 100.0 32 ............................ TGAGTTCAAGTCCTACAGTCGGACTTGAACAA 56320 28 100.0 32 ............................ AGGCTGTGCTGTAATTAGTTTAATAGCCATGA 56380 28 100.0 32 ............................ CGTCGGTCATAAGTCCACCTTCGGAAAATCAA 56440 28 100.0 33 ............................ ATAATCAGACTGTGCATTTTTAAGTGTTTTTAC 56501 28 100.0 32 ............................ TTGTCGGCTGTCGGACGGTTGATCATGTAGAA 56561 28 96.4 32 ...........T................ AAAGCTATATGGCTAATGGGTTGGATATTGAA 56621 28 92.9 32 ...T.......T................ ACCACCTGTGGTTAAAAAATCCCCTAATTTTT 56681 28 92.9 32 ...T.......T................ TTCTCGATTTTCTTTAATTTTGAAAGCTTCTC 56741 28 92.9 32 ...T.......T................ AAAGTAGTAAGATCTGGTGCATTTTGGATCTG 56801 28 96.4 31 ...C........................ AAAAGCATCCAAAGGCGTTGTCCTTGGTAGA T [56826] 56861 28 96.4 32 ..G......................... CTTAGCAGATAGTTTTTTAGGCGCTGGTGTTT 56921 28 92.9 32 ............CC.............. CAATATTTCGGAGTTCCACAACGCCGCAGACG 56981 27 85.7 0 A..A........C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 94.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : CTTTAAAAATTGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGCTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGCACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGGAAAATGAAAGTGTTGAAGACGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCAAAAATTTAGCCTAAGACGATTAGGTTATATTTTTGAAAATTAGAAAAATTAATATAATTCAATGGATTGTATTGTTGTTCTGTTTTGAAGATTTTTGATTCATTAAAACTTTATATTTTTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCAA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGACGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATTATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGAAGGTTTAGAAGAAATACGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGCGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCAACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGTGCAGCTGGGGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //