Array 1 73236-77095 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOH01000001.1 Myxococcus xanthus strain DSM 16526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 73236 36 100.0 34 .................................... GTCCGGCGCTTCAAAATCTCTTTCGACTCATGCA 73306 36 100.0 37 .................................... CCGTGGTGGGTGATGGCCCACGTCCACGGGCGCGCGA 73379 36 100.0 35 .................................... AGGTACTTCTCCAGGCTGCCGCGCATGCCCGTCAG 73450 36 100.0 35 .................................... GGCCTGATGCGCTCAGGCGGGTGGCTAGATGGATG 73521 36 100.0 35 .................................... ACGTGGCACGCGGACAACCTGCGCGTGCATGCCAA 73592 36 100.0 35 .................................... GCCGCGCTCCAGCATCGTGACGACGAGCACGTGGT 73663 36 100.0 36 .................................... TCCGTCTTCACCGTCATGTCGTCGTCCTCCCTCAAG 73735 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 73807 36 100.0 39 .................................... TCCATTGGCTGAGGCGAATGCCTCATTCCATGGTCTGTT 73882 36 100.0 37 .................................... AATTGGGCCTCGCGGTGAACACCGAAAATCTGGTCCG 73955 36 100.0 35 .................................... TCGAACCTTCCGATGCTTGAAGGTCACCGCATGGG 74026 36 100.0 38 .................................... AAACTATACTCAGTCCTGATTTGCATTTGCGTCCTCCG 74100 36 100.0 38 .................................... CTAACAACGCTTTTGCTGACCCTGTGCAATTGGTTAAC 74174 36 100.0 36 .................................... TCCAGCTCCAGGTGGGCGCCAGCCAGCGCGAGGCGG 74246 36 100.0 36 .................................... ATGTCCTCGGCAATCAGGACGAAGGCGGCGCGTTCG 74318 36 100.0 37 .................................... GTGCGTCTGGCCTTCGCCGTCGTGACGAAAAGGATGG 74391 36 100.0 35 .................................... GTGCTACCTCCTACTGCATGAGAGACAAGGCGGGA 74462 36 100.0 37 .................................... CCATGAGAAGGCCATTGTCCCCTTCACGGGTTCATAG 74535 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 74609 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 74683 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 74757 36 100.0 34 .................................... TCTGGCACCGGGGCCGTGGAGCGCGCTGGGTTCA 74827 36 100.0 40 .................................... TCGAGGCCGGCCAACCCGGCCGTTGGGTGAGTTCGAGAGA 74903 36 100.0 38 .................................... ACGGCGATGTGCAATGCGAAGCGTATCTCGGTCCCCTG 74977 36 100.0 37 .................................... CACGACATCCAACCCGGCCCGCGCCATGTCCGGGGCG 75050 36 97.2 36 .........A.......................... CTCCCATCGCGCCCCGTGAACGTCTTCTCCCGTCCA 75122 36 100.0 33 .................................... CTCGTATCGAGTCCAGGAAGCTCCTCGACTTCA 75191 36 100.0 38 .................................... CGTCGCCATGTCGTGTGTCCTCTGCGGTGCTGCGGGTG 75265 36 100.0 40 .................................... GTCAGGGCGGCGCTCAGGTACTCTGCGCGGTACTGAGCGG 75341 36 100.0 33 .................................... TCTGCCATTCGCACGATGCCGTCCGGCTTGAAT 75410 36 100.0 34 .................................... TCCGAGGTGGGCGGCAAGGTCGAGTGCGAGCGCA 75480 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 75552 36 100.0 40 .................................... CACATCGCGGCGACCTGCCGTGACGAGAAGGCCATCTGGT 75628 36 100.0 34 .................................... AGGACAACCGCATCACGAAGGGGGAAGCGACGAT 75698 36 100.0 34 .................................... CTCGCCTACGAGCACGACATCTTCAAATCAGGAG 75768 36 100.0 37 .................................... AAACCCCCGTCGCGCCCCATGTAGCCGACTGGGTGGT 75841 36 100.0 36 .................................... AAGAAGTCCGGCCGGATTGAGCGGATGCGGCCTATG 75913 36 100.0 35 .................................... CCTTCCGTGCGATGCGCCAGAAATTGACTGGCAAG 75984 36 97.2 36 ......G............................. ATGACAGTGATGATGCGTGGGTCCGGGACGGTCAAC 76056 36 100.0 37 .................................... GGAGGGTGCTCCGCGATCTCCGGTGCCGAGTTGCCCG 76129 36 100.0 37 .................................... TAGTCATTCACGAAGATGGAGATGCCGCGGTACGCAG 76202 36 100.0 36 .................................... TCACCATGGCGGCCGTGCGGCGAAAGCCGCGCAGGA 76274 36 100.0 36 .................................... TCGTAGCCGGAGTACCACCCGCCATTGCCGTTCTCC 76346 36 100.0 33 .................................... GTTTGAAGATTGCCTGTTAGGCCGTAAGGCTTC 76415 36 100.0 35 .................................... CTGCAAGCACGGTGGCCAGCAGCTTGCCGCCGTTG 76486 36 100.0 38 .................................... AAACACACGGGGTGTTTCAACATATCGCCGTCGATTTC 76560 36 100.0 36 .................................... CCGAACCCATGGAACGGGTCATATTTATTGAACATA 76632 36 100.0 34 .................................... CTATTACGCGCGCTGCGAATGCAGTCATCCAAGA 76702 36 100.0 34 .................................... CTCGCACTCGACGCGAGACGGCGCCAACCCACCA 76772 36 100.0 34 .................................... GCTTCTCCGTCCTTCTTCTTGTCGTCTGCCATTT 76842 36 97.2 39 ...................................T GTGGTCCAGTGGTCGCCCTTCACGCGGACGACGTCGGGC 76917 36 97.2 37 .....................C.............. AAGGCTGGTATCCGTGACGCGGAGCGCTTGGTACGCG 76990 36 94.4 32 ..C............................C.... TAGTCGGTTCCGCCATTCTGGTGTTGCCAGAC 77058 36 94.4 0 ...............................CT... | GC [77061] ========== ====== ====== ====== ==================================== ======================================== ================== 54 36 99.6 36 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCTGGTGCGTATCGCCGGGAAGCGGGTGGTGGGTTACGCGCTCGAGCTGCATGGCGTTTCTGGAGAGGACTCGTTGCGAGTGCAGGCACAAGGCCTGGGCGGGCGCCGCCACATGGGGTGTGGCTTGTTTCTTCCGCCGCGTCCCGTGGTGCGGGGCGTTGTGCCGCAGCTCGGGGAACTCGCGCGGGCCGCGTGAAGGCTTGCCGGTGGAGCAGGGGCCTTGCAGGAACGTAGGACCGGGGGCTGTGCGGTGCGTGACATTCATGCACCTCGCCGTGGTGGAGGCCTGTGCCGGTGAAATCGTTGAAATCCTCAGCGAGTTCATGGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATTTATGAAAAACCGAGTGATTCCATGGGGTTTGGAATCTTGGGTAGGGCCTGGGAGGCGCAACCTGGGGCCGGGAGGGGGGAGGTGCTTGAAAAGACGGGAGTAAGTTGCCGGAACTGCTGGGAGATTCAGATGGGCT # Right flank : CATCTGGAAGCTGCGAGGCCATCCTGCTTTCCAGCAAGGTCGCGCTCGCCGTACAGGGCCTCCATGAGCGAACATCAGGTCTACGAGTTCGTGGCGCTGGACCGGCCCTTGACGGCAAAGCAGCTGGTCGAACTCCGGGCCATATCGACGCGGGCCGAAATCACACCGACCCGGTTCTGGAACGAATACCACCGGGGTGGCTTGATGGCGGACCCAGCCCAGCTCCTCCTGCGCTACTTCGATGCGCACCTGTACCATTCGAACTGGGGCGACCGTTGGCTGATGCTGCGCCTGCCGCGTGAGGGGCTCGACATGAAGGCGCTCAAGGCCTGCTTTCCGGCACGAGGTCCATCAACGCTCACGGTGTCTGGGACCTCCGTGTTGCTCGACTTCCAGGTGAGGGATGAGGAGCCCCCGGACGAGGAATCTCCGCCCGCCTCGCTCGCGGCGCTGGTTCCGCTCCGGACCGAACTCCAGCGCGGAGACCTGCGCGGGGCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 98948-100562 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOH01000001.1 Myxococcus xanthus strain DSM 16526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 98948 36 97.2 37 ...T................................ TGCTGACGCACCACGGCAAGCGGATGGGGCGCTGTCA 99021 36 100.0 39 .................................... GTTTCCGACGCGCACGCGCTTGCGGTGTCCGTCCGGGTC 99096 36 100.0 35 .................................... AAGGCGTTGCGCGCCACCATCTGGCAGTGCATGCC 99167 36 100.0 35 .................................... CCGTGGCGGCACACCTGTACGGTGCCAAGTCATGA 99238 36 100.0 35 .................................... AATCCTCACTGTACGAACAGCCCGCGCTGCGTCCT 99309 36 100.0 36 .................................... GCCTGATGCAGCGTGGATACACGCTGAAGCCGCCTG 99381 36 100.0 33 .................................... GAGAAGGGTGTCAAGGCTAGCATTGAAGGCTTT 99450 36 100.0 36 .................................... GAGGTCGCTGCCGCCCTGCGCGCCGTGGGCTTCCAG 99522 36 100.0 37 .................................... GCGTCTATCGCCAGGACAAGGGCTGTGTGTCCTTGGA 99595 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGTT 99668 36 100.0 33 .................................... GGCGCGGAGCCGACCGCCATCGCGCGTTCCTTC 99737 36 100.0 35 .................................... CGCCAGGGGGGGTCCTGAACGCGATTCACCGCGTC 99808 36 100.0 37 .................................... AACGACCTCTGGTCGAAGTTGGTGCGTGGCAACGAAT 99881 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGCT 99954 36 100.0 36 .................................... CAGGGCTGGGACCTGTATCTGGAGAAGACGCGCGTT 100026 36 97.2 37 ...........A........................ TACCCACCCATGCCGACCGTTATCAGCTCCCACATCT 100099 36 100.0 38 .................................... CTCGATGCGATGGGTTCGAATCCGGGCGGTCCTGTGAC 100173 36 100.0 33 .................................... TCCCGGGCCTGAGCTACACATCCGCGCTGGCAT 100242 36 100.0 34 .................................... GTCAGCATCGCGTCCGGAAACTTGCCGAGCGCCT 100312 36 100.0 35 .................................... CTTTACCTGCCGCGCCGACAACGACCTGCGGCGGC 100383 36 100.0 35 .................................... CCTTGGTACGTGGAGTGCGGCATTGCAGCTCTCAT 100454 36 100.0 37 .................................... CTGCCGCGTCCGCCCATGTTCTTGCTCTCCATGTTTC 100527 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 99.5 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGCGACCCCAAGCGGTGGCGGAAGGTGCATGCCCTGCTGAAGGGATACGGAGAGTGGCTGCAGCTCTCCGTGTTCCGCTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAGACGGACGACAATCAAGCACCTCGCCGTGGCGGAGGCTCGCGATGGCGAAAGTGGCGGATTCCCTGTCGTTTCATGGGGGTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGGGTTGGCGATTCTGGGTAGGGCCTGGGATGGCCAACCTGGGGGAAGGAGGGGGAGGTGCTTGAAAGGGGTTTGTAAGGTGCCGGAATTGCTGGGGGATTCAGGCGGGCT # Right flank : TCGCTGGTTGTTACGCCAGTCGTTGTTGGTGTGGCCGCACACACTATTTGAGTTGTGAATGACTGTTCTCGCGGACACTGATTGAGGGGCTCGCGAGGAGAGGTTCCGAAAATGCCATTACGGAGCCGCGCCACCGGAAATCACGCTCGTGATGGGAGTCAACTCATTGTCGCGACAGCAGTTTCCGCGAGAAGCGGAAATGATTGCTCCCATCCTGCGGTTCTCCGGTCGCGTCAGGGCTGCCCGAAGGGCACCGCCGGAGGCGGCCAAGCCCTTGACGCGACTGGGGAACCGTAGTCCCGAGGCTACCAACCAAGTGGCTCACCGGACCATCAACAAAGGTGCGCGGCAACACCTCGGGCGACAGCTGCAAGGTGGTATTGACGGAGATGCTCTGCGACATCAACAAGAAGTCATGCTGAACTCTCTCTTGCTCCCGTTTGATGCCCTACGCCATGAAAGAACTGCTCAAGTACATCAATGGATTCGAACCCGCATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 101838-102453 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOH01000001.1 Myxococcus xanthus strain DSM 16526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 101838 36 100.0 36 .................................... AACGCGACCTGCGGCGTCTCTTTGTATCCGTGCACC 101910 36 100.0 37 .................................... TCCCTGCGCGATAGGGCCGCGCGCGTGGTACCCTTCG 101983 36 100.0 40 .................................... AAAGGTGGGGCGTCCTCTCGCACCAGGTGCCCCGCGTGGG 102059 36 100.0 35 .................................... TCGACGGGGACGAAATGGGCTCACGCCTCTGGACG 102130 36 100.0 36 .................................... TGGAAGAAGACGGCCATCCGCCGGCTGATCAAGCTG 102202 36 100.0 38 .................................... ACATGGATGCCGCGCAGTGCCTGCATCGGCCCGAGCCC 102276 36 100.0 33 .................................... CCAGCGCATATCCCTCGTACCGCCCGAGGTTCG 102345 36 100.0 35 .................................... CTGAGCTGCGGGTGAAGGGGGCGTTGCAGGCCAAG 102416 36 94.4 0 .....A............................C. | CT [102448] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.4 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCTGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTCCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGCGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGACGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGACGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGAGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGAGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTATCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGCTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAA # Right flank : CTATCAGAAGATCTTCATTGTAGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGCGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGCGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAGGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGCCTTGAAGGTCTGCTTCGCCGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGAAAGCTGCGCTCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCGAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 378122-382195 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOH01000001.1 Myxococcus xanthus strain DSM 16526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 378122 37 97.3 33 .................A................... GGGCCCGAACACGCGGCGAGAGCCAGCGCCATC 378192 37 97.3 33 .................A................... GCTGGCACACGGGCGAGCCGGAACAGCTCCAGC 378262 37 97.3 34 .................A................... CGGATGGTCCACAGGACCACCTGGCGATCATCGT 378333 37 97.3 34 .................A................... CGAAGGGTTGAAGGCCACGAGTGCGAGTGGCAGG 378404 37 97.3 37 .................A................... CACGCAGGCCCAAGCGCAGCTCCATGCGCAGATCGCG 378478 37 97.3 36 .................A................... CGGGCAGGTGCTGTGGACCGCGTTGGTGGCTGTCGA 378551 37 97.3 32 .................A................... CAAGCTGTGACAGCGGTGTGACAGCGGATTCT 378620 37 97.3 35 .................A................... AACAACTACCTCGGGAACATGGATGGCACGGTCAA 378692 37 97.3 33 .................A................... GAGGAGGGGCTGCGCAGGGCCCTGAAGTCTGAC 378762 37 97.3 34 .................A................... GCGTCCGGGCCCGCCTGGAGAACCACGGGGCATT 378833 37 100.0 32 ..................................... ATCCCCTCCTGTCCCATCCTCCCCACCACCAG 378902 37 100.0 33 ..................................... AGCGAGCTGGGACTCCAACTCCCGAACGCGGGA 378972 37 100.0 34 ..................................... CAGCGCGGCCGTCTGCGCTGGTGCTCCGGAGGGC 379043 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 379114 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 379185 37 100.0 33 ..................................... TGCACCGCCTCCTGCGAGGCTGCCGCGCAGCAG 379255 37 100.0 35 ..................................... TCCTCGCGAGTCGTAGCACCTGGGCGGCTCGCGCG 379327 37 100.0 36 ..................................... AGCACCCAGCGGATGCCCTGGGCGAGCTCCTCTTCG 379400 37 100.0 33 ..................................... ATAGACGTCGTAGGACTGGGCGAGCGCGGGGGC 379470 37 100.0 34 ..................................... TTCGAGCCGTCGGTTGTGGGGGACCTGTTCGGGC 379541 37 100.0 33 ..................................... TTGATCGAGCAGCTCAACGGGAAGAGCACGATC 379611 37 100.0 33 ..................................... CGCCCCAGCTTGCAGGCCGAGGAGCCGCAGTGC 379681 37 100.0 33 ..................................... GGAGAGCAGATGCGCGGCTGGTCCCTCATGGTG 379751 37 100.0 32 ..................................... GCAATCTGACGGTGAAGCCTGGCGCCGAGCTC 379820 37 100.0 35 ..................................... CCATCCGAACCGACACCTACCACCTGACGTGCAAA 379892 37 100.0 33 ..................................... CTGATCGAGCAGCTCAACGGGAAGAGCACGATC 379962 37 100.0 33 ..................................... CGTCCCACGGCAAGCCCGTCCCAGTGGCGCGTA 380032 37 100.0 33 ..................................... TCCCCAGCAGAGGCTCTTGAGGCCGCCTACGTG 380102 37 100.0 35 ..................................... TCCACGTCGCTGGGCTTGGGCCAGCCCGGGAGCTG 380174 37 97.3 33 ............................A........ GACGCAATCCGCGTCGATTCGTCCAAGAGGAGG 380244 37 100.0 35 ..................................... TGCACCACGGGGATGCCGAGCGCCGCCACCCGAGC 380316 37 100.0 35 ..................................... GGGACGGTCCACTTCTTCGAGCCCCAAGTCTACGG 380388 37 100.0 33 ..................................... ATCGCCGTAGATGGTCGCCAGGGGCCCGGCGCA 380458 37 100.0 33 ..................................... TTGATGCCGACCCAGCAGACCGCGCAGCGCTCA 380528 37 100.0 33 ..................................... GAGTGGCCCGGGAGGGACGGCGTGGCTGACTGG 380598 37 100.0 33 ..................................... TCCAGCCCGCGCAGACGGCGGGCAACGTCCGCA 380668 37 100.0 34 ..................................... ATGAGTCGCTGGCGCACCACATCCATGTCGCGCG 380739 37 100.0 34 ..................................... CCAGGGGTCGGAGCACACCCACGACAATCCAGCC 380810 37 100.0 34 ..................................... ATGGAGCGCGGACAGGTTCAGCTTGAAGCCCTTG 380881 37 100.0 39 ..................................... TGAACCCGCCCACGGGCGTCTGCTGCTCGCCACACGCGC 380957 37 100.0 34 ..................................... CCGATTCCTGTCGCACTCCGATGGCCGATTCCGT 381028 37 100.0 33 ..................................... GTAAAGCGAGGACAACAGCGCCACCTGGATGCG 381098 37 97.3 33 ..............................G...... CGCGAAGATCGCCTGCTAGACGAAGGTTGCCGG 381168 37 100.0 35 ..................................... TGTCCGTCGACGTCGAGCGCTTCGAACGTCACGTT 381240 37 100.0 34 ..................................... AGCATTCACCCGGCTGCTGTCACGGTCGTGTGGA 381311 37 97.3 33 .....................A............... TGGTCGCTGATGCTTGCGCCGAGCGCGGAGAAC 381381 37 97.3 34 ..............................C...... ACGTCCAGGTTGCTACGGTCGGTGATGGCGGCCT 381452 37 97.3 33 T.................................... TTGTAGACGAGGTATGCGGCGGCGGCGAGCGCA 381522 37 97.3 34 .......................A............. GTCGCAGATCACCAAGTCTGCTTCGGGCGGCTTC 381593 37 97.3 32 ...........................A......... TCATTCGCCTCGCCGGCCTTCTGGGCCTTGTC 381662 37 97.3 35 ........C............................ ATGATGCTCGTGGACAAGGACCCGGCCGCCAGCGG 381734 37 100.0 34 ..................................... GTCAGTGCGCACCGCAACGGCCTGGCGCCACAGC 381805 37 97.3 36 ......T.............................. CGTGCAGTCTCAAACCAGTCTTTGCCCGACCGGATA 381878 37 94.6 34 ...A...............A................. CTGAACGCCGCCGCCGGCGTGCTGTTTTCGAGGT 381949 37 94.6 31 .......................AT............ TCACCCAGCAACGTGGGGGAGTACCGGAGGG 382017 37 97.3 35 ..........A.......................... ACCGCTGACTCCGTGGACCTCGCGTACCTGGGCCA 382089 37 100.0 33 ..................................... CGCGAGGCGCACCGGGTGGTGGACGGGTGGGCG 382159 37 94.6 0 ......T............A................. | ========== ====== ====== ====== ===================================== ======================================= ================== 58 37 98.8 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATTTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGAGCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCCGTCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAGTTCGGCCGGATTCCGTAGTCAGAACGGTATGTTGGAAGGGCAGA # Right flank : CCACCCAGAGCACTGGAGTCCCGGTGCCGCGTCCTGCTCGTTCCTCATGAACGCGAGTACTCTCTCTCTTCAACGGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCATGCTCAGGCTCCAGAAGTCGCCGGGCATACCCAATCCACGGCACTTCTGGCTCGAGGTTTTCGGGGATGGCCGTTCCAAGCGCAACGGCTCGTCTCTATCCAAAGCGAACGCGGCCGACGCCCATCGGCTCACGATGCTGCTCATCGCCGCGCGCCGGTTGGACGAATACAAGGAAGATCACAGCGCCCTCCTCCCGTCGCACATGACCGGCAGGTGACGATGTTCGAATCCACCGTGGACGGTCGGCGCACGCGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCCGCAGGTGGCTGCCGCTTACGGCATCGAGCTTTGAGCACGAGGACCCCGGGCGCCCCAGGGTTGGAGGAACACCTCCGTCTCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //