Array 1 65419-65652 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLD01000010.1 Treponema putidum strain ATCC 700334 JM98DRAFT_scaffold00010.10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 65419 36 100.0 30 .................................... AAGAAAAAACAGCAGGCAATTGTACACCCG 65485 36 100.0 30 .................................... ATAACTGCTGCCGTCTGAAAAGCTCTTTAC 65551 36 97.2 30 ..................................A. GCTCAAGCACTGCAATGAGGGCTATGATAA 65617 36 80.6 0 ........................A.AT...G.CTG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTTTGAGAGTAGTGTAATTTAAGATGGATCTCAAGC # Left flank : GTATTTCCGACGAATATAATTATATAAAAACATGCACAATAAAAAGCAAAATATTAAAACATATAGACGATATACTTCTTTCTTTGGATGTACCTCTAAAACGGAGTGAAGAACTTGATTTGATCAGCATATTTAAATCTGTTAATATCTCTTTTGAAACAGAAAATAAAAATTTACTTGAAAAACTTATAGATTATATAAGTGCCTCTGTGGAACTAAATCAAATAAGATGCTTTATTTTTATAAATCTAAAGCAGTTTTTAAATTTCAAAGACTTATCCAAGTTATATAAATTTGCCCGCTATATAAAAACGAATCTATTTTTAATCGAGGGAACATACACATCTATAAAAGAAGATTGTGAAAAATCATATATTATTGATAATGATCTTTGCGAAATATATTGACAAGAAATTATTTGCATGTTAATATTAAAAAGTAATCATCTTAAACTACCGCTATCCATAGCGTGATAGGCTCTCACCTACACCATATCTGAT # Right flank : GTGAAAGAATGAAAGGAACATACAACCGTATGTATCTTGCAGTTTAACTTTATCTGCCATATATTTTAATTTTTTTTAAGAAAGTCGATTTTGTTTATTGACTTTTTATGGGAGCATTTATAGTAAATAATGAAAACATAGTTTTATTAAATGATGAATTAAAAAACATAAAACGGTAATCGCTTCCGGTTTCATAAAAACTTCTTTTTTAGTTAAAATTTTCATCTATTATTTTTTGTAAGTTGATAACCGATTCAATATCCCCTTCCAAAAAAAATTTAAAAGTATTTGCTGTTGAGGCAAAATAAAATTGGCATTTATTTGCTTTCTCAATATTTTCATTTATTTTTTTCATTAATTCTTTTAGTTTAAAATCTTTCTTATACGGATAATGCAGGATTGAAAAGATTTCAGGCGTTTCAATAGAATCTTTTTTTAAAAATTTTTGTAATCTATGGTTTTCATCAATATTTTTTTCGTCAATAAAACTTTCGTCCGAA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTTAAGATGGATCTCAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: F [matched GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 70315-71037 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLD01000007.1 Treponema putidum strain ATCC 700334 JM98DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 70315 30 100.0 33 .............................. GAGCTGGACTGCGACTGGAATAAACTCACCGAG 70378 30 93.3 33 ........A..............C...... GGGCTGTCCTGCTGGGGCAATCAGCTTACTGAA 70441 30 90.0 33 .....T..A..................A.. AGGCTGCACTGCGGCAGCAACCGGCTGACCGCT 70504 30 96.7 33 ...........................A.. TATCTGAGCTGCTGGGAAAATCAGCTGACCGCC 70567 30 100.0 33 .............................. TGGCTGTACTGCGACGACAATCAGCTGACCGTC 70630 30 96.7 33 ...................A.......... GGGCTGATCTGCTACGAAAATCAGCTTACCACG 70693 30 86.7 33 ........A..A....GT............ GAGCTGCTCTGCTACCGCAATCAGCTGACCGCC 70756 30 100.0 33 .............................. ACGCTGAAGTGCTACGGCAATCAACTCACCGAG 70819 30 96.7 33 .....G........................ GGGCTGTGGTGCTACAACAATCAGCTTACCGAA 70882 30 93.3 33 .....T......................G. GCGCTGTGGTGCGGCGTAAATCGGCTAACCGAA 70945 30 100.0 33 .............................. GAGCTGTACTGTGACAGAAATCAGCTCACCGCT 71008 30 96.7 0 ...G.......................... | ========== ====== ====== ====== ============================== ================================= ================== 12 30 95.8 33 CTTAACGTGCAGGGCTTAACCGCTTTGCAA # Left flank : ACCATTTGTATTCGGTTTGGGAGAAGGAACATTCGGTTACCGCTTTGCAGTAAAAAACTTTTTTATCGAACCATATATAAGAGGCGGCTACCCCGTAATCTGGGCTGCCGGAATAAGCGGAGGTTTTAGAATATGAAAAAACATAAAGGTAAGATTTTAGTTTTATTTTTGGCGGTACTTTTAGTATCGGTTATGTCTTGTGAAAACCCGTTTTTAAAGAAGATGTTGGTTGAAGAGGAAAAGGGAAAAACCGTACCGGCAGCCCCTGAAAAACCGCATGCCCCTTTATCGAAGGCGGCGCTTCGCTCATCTTAAGTCACGATAAACTTGACATTACAGTTAAGGCAACAACCGCCGATAGTACCCCCGTTACAGTTGAAGGCTGTACCGAGACAACACTCCCAAGCGGTGCCAAAACCGTGCTGCACGCAAAAGGCACTGTCGTTATCCTTAAAGGCAAAATCAAAGAGCTGATCTGCAGCAGCAACCGGCTCACCGCC # Right flank : AGGGCTGTGGTGCTACAGCAATAAACTTAATGCAGACGCATTTAAAAAGCTCTTTGACGATTTGCCGGTGCGGGCGGATAGCGATGATGCGAAGTGTTATCTTTACACCGAAGAAACCGGCGTTAGCGAAGGCAATCACACGGACTTTACCGCTCCGCAAGACTTAAAGGATGCCTTTGATAATGCTAAAAATAACAAGAAGTGGAAGATGTATAAGATGAATGGAAGCTGGCCCGGGGTTGAGATTTAATTCTAGTTGGTAATTCGGTTTAATGTGTAATGGGTAATCGCCTACTTAATTACAAATTACACATTACCGATTAAAAAATATAATTATTTTTAAACCGCCGTATTGAACTTTTAGGGCTTTTTGAGTATAATTCTTTCCTGTTGATCCGTTAGCTCAGTTGGATAGAGCGGCTGCCTCCTAAGCAGCAGGTCGGACGTTCGAATCGTCTACGGGTCATTTTTTAATTCATGCAGGGCGTCAAAGGGATAAA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAACGTGCAGGGCTTAACCGCTTTGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //