Array 1 79140-79817 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFHDG010000007.1 Streptococcus suis strain WUSS029 Scaffold7, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	================================	==================================	==================
     79140	    32	 100.0	    34	................................	TGCTCAATAGCTCTTTTAATCAAAACTTGAACCA	
     79206	    32	 100.0	    34	................................	CAAATTCTTTTGAGATGATAGCCATCTCATAATC	
     79272	    32	 100.0	    33	................................	ATAATCGTTGCGATTTATTTTTTTAAGCGGGAG 	
     79337	    32	 100.0	    34	................................	ACATAGCCGTAGCACTCTGTTTGATATGTGCAAA	
     79403	    32	 100.0	    34	................................	TGTTTAACACCATATCCTTGTACAAGTTTATCGT	
     79469	    32	 100.0	    34	................................	TTCAAATATTACCTCCAAATTCTTGAAAGATATC	
     79535	    32	 100.0	    34	................................	TATGTTTTCGGCAGGTAAAGAAGTTATGTACATT	
     79601	    32	 100.0	    34	................................	AAAATCATCGATTGACAGAGAACACTGGTCAAGC	
     79667	    32	  96.9	    23	......................A.........	AACGTACCTGCTCGGACGGACCG           	Deletion [79722]
     79722	    32	  81.2	    32	.......T..T....A....AC..G.......	TGGACGGCACTATGGGAACACCTGGCACATCG  	
     79786	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                 	
==========	======	======	======	================================	==================================	==================
        11	    32	  95.2	    33	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                  	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGATAGCTATCCTCCATTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATTCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTTCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGATAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTGCAGATAACAGGCGTAACGACCTCTCATGCCACGGCTGAGCACGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA

# Questionable array : NO	 Score: 8.96
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-17] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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