Array 1 1850250-1849620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035807.1 Thiospirochaeta perfilievii strain P chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1850249 36 100.0 30 .................................... ATCATCAGAAAATTCTATCTCCCTGGATCT 1850183 36 100.0 30 .................................... ATATCATGGGATAAACTAGATAATCTATCT 1850117 36 100.0 30 .................................... GTCAATACTCCTAACAATACCCTGCCACTT 1850051 36 100.0 30 .................................... TTGAGAGACAGCCAACGAGTTAAGATCACA 1849985 36 100.0 30 .................................... ATATTATTAAGTCTCGTTTGATTTATATCT 1849919 36 100.0 30 .................................... TTTGATAAAGATAAAGATCTAAGCACTCTT 1849853 36 100.0 30 .................................... TTAATCCAAGAGCGGTGGGAATCAGAAGGT 1849787 36 97.2 30 ..................................A. TTTAAATAGCATTATTTCTCATGATGAAGC 1849721 36 100.0 30 .................................... ATATAGCTCTTGGGTATAGAGATTCGATCT 1849655 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GTTTTAGATGTGTGTCATTTTAGATGGAACTAAAGC # Left flank : ATAAGTTTGTCTATGGATAGCCATATGAAAAAAGATTTATGCATAGATGCTATAAAGGAGGCATATAAGTCAAGAAATCCTGGAAATGGAGTTATTATCCACAGTGATGCCGGGAGTCAGTACACTAGTGAAAAATATAAAGATACTCTTGGGCGATTTCGTGCCATTCAGAGTATGAGTGATGTTGGAAAATGTTATGATAATAGCAGGATGGAAAGTTTTTTTGCGACTCTAAAAAAAGAGAAGATATATAAAATTAATACTCTGAAATTGAAGAGGGAAGAAGTAAAGAAAATAGTCTGGAGATATGTGATGATTTATTATAATAGACAAAGAATTAATACTATGAATAAAGAGGGATTTCCTCCTTCTATTTATAGGAATATGACTACAGATAAACAGGCTGTAGCTTAGTTTATAATTTTAGGTATTTATGACTGCACTGATATTGAATATTTCAGAACTAAAGCTGGCCCATCTACTAAAGAGTTACAAGACCA # Right flank : TGTGGGAATTTCCATTGTAAATGAAGAGACGTGGTAGACAGTCTCCATTAATCCTATTTGAAAAAGAGTTAATCCTTTAAAAGCTAGATATAACATCCACACACCGTGGGTTAAATCAAATCTACTTAAAAATGTAAAAAAATAATCCTTTGTTATGTTTTTTTCTAATTCTTGACTGTCCATCTAATAAACTTTATCTAATTATATCTTTTATTCAATACTACTATGGTAGCATTAATAGACATGAAGGATTGACAATGTTTTTTTACTAATATAATCTTTTGCCAATGATAGTGCAAGCGTTTGCACTATAGTAAGTAGAGGGAGAAAATATGAATATACAGGCAATTATGCATAAACCTAAAAGTAACTATTGTTATGCTTATACTAGGGATAATATACATATAAGAATAAGAACCGCTAAGGATGATGTTGATAGGGTTCTACTTGTATATGGTGATAAGTATGAGTGGGAAAAAAAAATAACTACCGAGATGTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTGTGTCATTTTAGATGGAACTAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1853735-1851587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035807.1 Thiospirochaeta perfilievii strain P chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1853734 36 100.0 30 .................................... ATATAAAGTTACAGGTTCTTACGATGATTA 1853668 36 100.0 30 .................................... GTTGTGCCCCTCCAGGGCGAACTTCATAGA 1853602 36 100.0 30 .................................... TTTAATGACAGAATTTAAAGAAGACGGACG 1853536 36 100.0 30 .................................... TTTTGATATAAAAGGAATCCATGTTGAGAT 1853470 36 100.0 30 .................................... TTCTTTCGCTATCTATTATGTGTTTACTAG 1853404 36 100.0 30 .................................... ACTATTAATAATTATTCTATCACGGATGCT 1853338 36 100.0 30 .................................... ATAAAACCGTTTTCTAACAAATCATCTAAG 1853272 36 100.0 30 .................................... GGGATAACTTTGTGGCAGAGGTTGGACTTT 1853206 36 100.0 30 .................................... TCTCTTGCCTTTGTATGTTGTGTCTTTTCT 1853140 36 100.0 30 .................................... AAGAGTGAACATGCCCCACATGATACCACC 1853074 36 100.0 30 .................................... CATACAAACTATAATTTGACTAAATACCTA 1853008 36 100.0 30 .................................... TTTTCCAGAAGTAATCAAAACCTTCGTTTC 1852942 36 100.0 30 .................................... AGTTGTTACATAGAACTTATACCGATTCAA 1852876 36 100.0 30 .................................... ATATTGAACCATCTATTGCCTGTTACTGTT 1852810 36 100.0 30 .................................... TCAGGCGAACAAGAACAGATTAGCAACACG 1852744 36 100.0 30 .................................... TTTATACATTTGAAGAGTTAACAGAGCCAG 1852678 36 100.0 30 .................................... TAACGCCTAAAGTTAAAATTGCAATGGAAT 1852612 36 100.0 30 .................................... AACAGATGTTCTTGATGAATCGGGTGAGAA 1852546 36 100.0 30 .................................... CTAATAATAAAACTAGTAATGCTAAACTAC 1852480 36 100.0 30 .................................... AAGCTCAGATTGCCCGATACAACAAAAGAC 1852414 36 100.0 30 .................................... CTGCCAATCCATGATTATTAAGTACCCATT 1852348 36 100.0 30 .................................... CCTTTCAAGAGAGGTTATCAGTAATTGGTG 1852282 36 100.0 30 .................................... AAAATTACCTGAATATGAGAATGTTGATGA 1852216 36 100.0 30 .................................... TATTGAAATAGGAACCACTTATGTATTCCC 1852150 36 100.0 30 .................................... ACCAGAGGGCTACTACTAAAGATTATAAAT 1852084 36 100.0 30 .................................... ACTTTAGTAACCATCCTGGTTGCTTCCGGA 1852018 36 100.0 30 .................................... TATCTTCCCCATATATTGCAGAACCCCTAG 1851952 36 100.0 30 .................................... AATTTTTAAAGTAATGCCAACATTTTACAT 1851886 36 100.0 30 .................................... GAAGATGTTTCTCATAGTAGGATCATTTGA 1851820 36 100.0 30 .................................... GTATTATCCATCATGTCACTACTGTTAGTG 1851754 36 100.0 30 .................................... AGAAGATTGGGTATATTACAAGATTACTGG 1851688 36 100.0 30 .................................... TTAACTCTTCCTCAGCTACTAATTCAACAC 1851622 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 100.0 30 GTTTTAGATGTGTGTCATTTTAGATGGAACTAAAAC # Left flank : AATATACAAAAAAAACTTATTACTATTATTTCAGAAGAGTTATACTCAGATATTGAGTTCCTATCAAAGTTAGAGGTTAACTATTCAACCTTAATAGAGCAAATTGAAGGTAAGATTATTGAGCATGATATTGATTTGGTAATAAATTCAGATTTCACACCTGATAAGTTTTTAAAATTTGTGAACTTAAATATTAAATTGCCAGATTCAGGAATCTTATCACAACTTTATCAGTATGTAGATGTTGTTACTGAGTTGAATTTATATGAAGTTGTAGTGTTTACAAACATTAAGCTTTTTTTAGATTCTAATGAGTTATTAGAGTTGTTTAAATATATAATTTACAAGAAATTGAATTGTATATTGTTAGAAAATATAAGTAATGATATTATAGATTATGAAACAAAGTTAGTTATTGAAAGTGATTTTAATGATTACACTGAAAATCCATCTACGACATAGTAGGGAGTGTGTGTACCTGCTTCTAAAGCCTATTTGAG # Right flank : TGGACTTTTCGTATTGAAAGGTTATCATAAAAGTGCAGTCTAAAATACCGAAATAATAGTAGAGGTATTTATGACGAAGTATAGTAAAGAATTTAAAGAGCAAGCATTGGGTTTATCTGATGATATAGGACTAAAAAAAGCATCAGAACAATTAGGTTTAAAGTACAGCACATTAGCAGGATGGAGAAGAATCAGAAATAAGAAAAAGAATAATACTAAAGATCAAACTTACTCTTCACCTCTAACAGTAAGAGAAGAAGAGATGCAGCGAGAAATCCAGGAATTAAAGCAAGCTAATGAAATTTTAAAGGATGCTTTAGGTTTTTTTGCCAAAGACCGGAAGAAATAACAAAAAAGAGCATTTTTACATATATTCATGAGTTTCAGAAAGAGTTAAATCTCCCTGTTATTAGAATGTGTAATGCTCTAGATGTCAGCGAGACAGGTTACTATAAATGGAAAAGAACTAGGAACCGTCCCAAAGCATGGCAGCTTCTTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTGTGTCATTTTAGATGGAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //