Array 1 116146-118003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFO010000003.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 512 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116146 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 116207 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 116268 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 116329 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 116390 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 116451 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 116512 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 116573 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 116634 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 116695 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 116756 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 116817 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 116878 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 116939 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 117000 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 117061 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 117122 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 117183 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 117244 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 117305 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 117366 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 117427 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 117488 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 117549 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 117610 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 117671 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 117732 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 117793 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 117854 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 117915 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 117976 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134675-136778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFO010000003.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 512 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134675 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 134736 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 134797 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 134858 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 134919 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 134980 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 135041 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 135102 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 135163 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 135224 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 135285 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 135346 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 135407 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 135468 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 135529 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 135590 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 135651 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 135712 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 135773 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 135834 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 135895 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 135956 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 136017 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 136078 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 136139 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 136200 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 136261 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 136322 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 136383 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 136444 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 136505 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 136566 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 136627 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 136688 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 136749 29 100.0 0 ............................. | A [136776] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //