Array 1 465172-463618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMZX010000002.1 Veillonella parvula strain 1001295B_180824_H5 NODE_2_length_600704_cov_65.8195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 465171 36 100.0 30 .................................... TGTCATGTTAGGTTGCACAGCAACTCCAGT 465105 36 100.0 30 .................................... TACTGTTGATTACCTAACAGATTCGGACTT 465039 36 100.0 30 .................................... ATCGCTAAAAATTGCTAAAAGTACTTATAA 464973 36 100.0 30 .................................... GCCGCCTTCATAAAGGTTTATTCTTGATAG 464907 36 100.0 30 .................................... TTGCCCTTGTAAGAGTCCGATTTCCGATTG 464841 36 100.0 30 .................................... GTTGAGTTCATTAACGACTACCGTATCTTG 464775 36 100.0 30 .................................... ACAGAACTCAAACGAAGCATTGAGTATTCT 464709 36 100.0 30 .................................... TGCACCTTCAATCGTTGGACGAACCTTATC 464643 36 100.0 30 .................................... CGCCATATCCTTTTTGTAACCATACATGGA 464577 36 100.0 30 .................................... ATCTATAGCTTGCAAACCATGATGAGTGCT 464511 36 100.0 30 .................................... AGCCTGCAACGAGGAACGTCCCCAATAACA 464445 36 100.0 30 .................................... GATAACTTCACATTCCGAATATAATTCACC 464379 36 100.0 30 .................................... TCTCTACACTTTCTAAACGTCTGGCAGGAG 464313 36 100.0 30 .................................... ATTGCTCTTTGTTAAATCAGCGATACTGTT 464247 36 100.0 30 .................................... CCACTTCGTCGTGGATATGGGCTACAATTT 464181 36 100.0 30 .................................... GCCGTATTAGTTGAAACGGCTTTCATCGAT 464115 36 100.0 30 .................................... TTCACACCTCGCCAGTTGATGTCCTGGTCT 464049 36 100.0 30 .................................... TTTCACTTCAGATTTTTCAGCTACTTTTTT 463983 36 100.0 30 .................................... AGGGTTACTAGGTGATTTACCTTGACGTGG 463917 36 100.0 30 .................................... GGTGATTTTATGGAACATATAACTAAGTGT 463851 36 100.0 30 .................................... ATCAAGTTCATATACAGCCGCATCATATTC 463785 36 100.0 30 .................................... ATTTCTTAACATCGATACGTTAGAAGATCA 463719 36 97.2 30 ...................................T GCGATTGGGATTATGCAAAACTAGCAGAGG 463653 36 97.2 0 ...............G.................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Left flank : AACTAAATTACAAAACCAACTATCTAAAGACGCTTTATTGATGACTGAAGAGGTAGCGGATATTGTAAATCGACTTCATGCCTTTTACTATTCTTTAGAATTTGGATATCCTTTATCAATCCAACATAAACTTGAAATTGGTACTGCTGAACTTATTAAGTTAGGTAGCTTTAACTTTGAGTTTAATCGTACAGGGGATATTATGGATTTCATGTCCTACATAGAAGTGGTTGATACATTATTATCTCCCATGGTATATATTATGGTAAATCTAGATTTAGTTTTAAATGATGATGAGATTAATGCATTTTATCACAACATGTTGAGTAGACAATTACGATTAGTTTGTTTAACGACAGGATCTTTTGTTAAAGAAAATCTTGATAAAAGTCTTATTAATGGGTATATTTTAGATAATGATTTTTGTGTTATTTAAGGAGTATACAGAATTACACCTGGTGGTAGCCCGAGTTACTCTTGAGCCTCAAATTTAATTTGGG # Right flank : GAGCAAATTAGATTCTTCTTTAAAGATTTGGTTTGAGAGTAATGTAATTAGAATTTAGTAGATTATAAATTTGTGAAATGACATAAAAAGCCGAGCTACCTTGTTTTAGTAGCTCGGCTTTATTTGTTAATTTATATATTTATATAATATGATGCTTATTGTATCGTATATTAGTTCGCTCTATAATAGATTTAGGATAGTTAGACGAGGTTGGGACTCTCTTCGTTTTTGAAGGGAGGGATAAGTCTATGAGCGATTATGAAATAATCATGCTCCTGTTACAAGTAATGGCTATTGTTATTGCTTTTGGGGCTTTAATAGCACTTATTTGCCTTACAAGAAGCAAATAGCCCTCCGTTGCCTAGTGTAACTAGATAACTGAAAGGCCATTTCCTAATGTTTTACTGATTTAGAGATGAGCCTGACGGCACTACTCGTCTGACTATCTACCTATATTATAGGGATAAAGATTTATATCGTCAAATTGAGATAAACCTTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 481793-480293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMZX010000002.1 Veillonella parvula strain 1001295B_180824_H5 NODE_2_length_600704_cov_65.8195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================= ================== 481792 34 100.0 40 .................................. AAAAAGTAATTGTAGCAATTGATTTTCTTCGTCGCTAAGT 481718 34 100.0 45 .................................. AGCAGAAAGCGTTGCAATACGCTTATTCGTACCGCTACATTTAAA 481639 34 100.0 44 .................................. AGCACTGTTCCTTTTGTAATAAAAGGATTAAAAGTCTTTATCTA 481561 34 100.0 45 .................................. ATATAAACCAGCACGTTTTAAATCATCTTCGCAATAATAATCAAG 481482 34 100.0 42 .................................. ACTTGAAGCAGTAGCCTTTTAATTCGTGCCAATTATCAGCTA 481406 34 100.0 43 .................................. ACTAATTAAGCAGTTAGAAAGAGAGGGTCAATGATTATGAAAT 481329 34 100.0 41 .................................. CGAATTGAATACATTTAGGTAACATAAAATACCTCCTATAT 481254 34 100.0 44 .................................. CGACGCTAATTCTAATTTTCTGAACATAACTTTTTCGCGCTCAA 481176 34 100.0 42 .................................. CTAGTTATTGCCCTTTGCGGAGCGTACTACATCACTCAATGG 481100 34 94.1 40 ...................CA............. CAAGTTAGATACACGTGATATTACACGTATTTCAAATCGT 481026 34 94.1 43 ...................CA............. CTTAGCGTCAATAGTAGTAGATTTCTTAGTCATGATAAATCTC 480949 34 94.1 44 ...................CA............. CTTGTATGTAGTTTTTAAGCAATAAACGCTTAGAAAGGAGATAG 480871 34 94.1 44 ...................CA............. CATTACGGATATTGTGTAATGATAGGATGTGTTACTCCAGTTCA 480793 34 94.1 43 ...................CA............. CGTATCGCCATCACGTAAGTTCAATTTTAGGTAAGCTGTTTTA 480716 34 91.2 45 ................T..CA............. CATTTACCGCTCTTTTCGTTTCGCTCTTATGGTGGCGATTTACCG 480637 34 97.1 43 ..................T............... CAAGTGATTGGCGTTCTTAACATGGAAATCTCTTGTACTAATA 480560 33 91.2 43 ......C.............T.-........... CTATATTTCTCGGATAGAATAGTGGAGTCCGAAGAAATTGATA A [480542] 480483 33 91.2 45 .......A............T.-........... CGCCATATAGTGCTAACACTGGATGTAATAGGCATCAGGGACACT A [480465] 480404 34 91.2 44 ....................TTA........... CAGTTCGACATTTCTGACAAGGTAACTTCTTGCCTCACTAAGGC 480326 34 85.3 0 ..................T.TTA......A.... | ========== ====== ====== ====== ================================== ============================================= ================== 20 34 95.9 43 GTTAAATTAAATAATCCCCTGATGGGGACGGAAA # Left flank : GTCCAAAAGTCTGCGTTTGAAGCATTGCTTAATAGGAAGCAATATGATGCTATGATGCGGCGAGCTAGCAAGATGATTAACCCTATAGAGGACTCCTTACGAGTCTATGTCCTTGATGACATTATAAATATCTATACTTGGGGTATTGGAGAACGTAAGGAACAAGACTGCATCATTCTTTAAATATAAACAGTTACTCTCGATTAATACTGTTACGATGTAGAAGTGTAATTAACAATAATAGGATCATTAATATTGGTAAAAGTATTTCAAGGCTTGATGTTTTGTATTGATGATTCTATTATTGTATTATCTATTTCCCTATATGATATAATGGGTCTAGAATTTAACTCCTGAGAAATTAAATCTGCGCCGTTGTGATAGTGGTGCGGTTTAACGATGTTATTTTAACTTGATAAAGTGCTTTTTGAGATTAATTTGTAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAAAGACAGG # Right flank : GGCACTACCTTATTATTGTAGGTAGTGCCTTATGTATAATCTAAGGGTTTAATTGTCTTGTATTATAAATACTTAAGGTTTCGTTACTTTCTCTCTTGGAATGAAGGGTGGATTATTGAAATAAAATAAGTGATATTTATAATATATAATATATTAAGTAACTATATTTATTATTTAGTGTGTATGGGATTGGGGAGCTTTCAAAGGATAAATATCATTTGCCATTTTCTATTGGTCATGGTGAATTTATTTTCTTTGGTGGTAACGAGGTTTCACTCACTATTTATAACTGATTATTGTCATTGCTTTGGGATCCCTAGTATCCTTTATTTGTCTTACAAAAAGCAAATAGCCTTCCGTTGTCTAGTTTAACTAGATAACGGAAGGCTATTTCCTAATCTTTTTTCGATTTCGAGATGCGCTCGATGTTTCGACTCGTCTGACTATCTTTTAATATGATAGAGATAAAGGTATATCGTCAAATTGAGATGAATATGTAC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGATGGGGACGGAAA # Alternate repeat : GTTAAATTAAATAATCCCCCAATGGGGACGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 491679-494903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMZX010000002.1 Veillonella parvula strain 1001295B_180824_H5 NODE_2_length_600704_cov_65.8195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================================== ================== 491679 34 80.0 43 AGAA...G.......-......T............ CTAAATACATGAGGGAAAAATATCCGCAAGCCTACTATTTTTT G [491687] 491757 35 85.7 43 ............ACCA......T............ TCCAGAAATCTTCGAAAGTGAAGAACCCTTTTTGAATATGGGT 491835 34 91.4 44 ......A......C.-................... CAGACTATACCTAAGAACTTGAATATTGAAGTTTGTGGTAAGAT G [491847] 491914 34 88.6 43 .............C.-......T.C.......... ATATTTATGACATCAAAGAAGAATGTTCTATCTATTTATTACC A [491926] 491992 34 88.6 42 .............C.-....G.T............ ATGGCCGCTATTCTAGGCCTAAGCAAATATAGATCTGCACTT A [492004] 492069 34 91.4 44 .............T.-......T............ GTAGTAGCAATTGTTAGACAGAATGTCTATGATTCTGTAACAGG A [492081] 492148 34 88.6 44 .............C.-A.....G............ ACAATATCTGACGAATATTTGAATCAGTTCGCAAAGTACATGCA A [492160] 492227 34 85.7 51 ....T........T.A....-.T............ TATTACTCTATTATTCTACGTAGATTATATCACAAAAAGGATATCTTATAG A [492239] 492313 35 91.4 42 .........A.......A......A.......... AAAAGCGATGTTCCCTGATGAACAATCACCCTATGCTGCGGA 492390 34 88.6 43 .............C.-......T.....G...... CTGACTTTATTCTTGTTAATAGCCAAACAATTAAATTGATCGT A [492402] 492468 34 88.6 42 ....T........T.-......T............ GACTTTTACAATAGCCCTCAAAACCTAGCAGATTTTGAGGAA A [492480] 492545 34 88.6 42 .....T.......C.-......T............ GGGAAGTGAAGCGAAAGATACTGTAGGCATGAGAATATACGA A [492557] 492622 35 97.1 42 ......................T............ TCTTACAAATCCTACGCAAGTATACTCCGGCATGTATGTCAA 492699 34 94.3 42 .............C.-................... ATGGGAAACGGTTAATAAGACATTATTGGTTCTTCCGACTGG A [492711] 492776 34 91.4 38 .............C.-......T............ CGTAAATCCTGCTTTATCCGTCAATCTGGGTTTATTGA A [492788] 492849 35 91.4 45 .............GT.......T............ CACACACTTCCCCTAAAAACGTATTCGTGTTTGCACGTCATGATG 492929 35 91.4 42 .............GT.......T............ CTGTGTTGCTATTCTGTACGTTATTTATTTTAACTGGTCTGG 493006 35 88.6 42 C............GT.......T............ ATAAGATTGTATAGTAAACTATCGTTTATAATCGAATTGTAT 493083 35 100.0 42 ................................... GGCTATCGAGATCACACACGATAGAGGGAAAACCTCAATTAA 493160 35 100.0 42 ................................... ATGTCTTCTGTTGCAATATTTTTGCACCATTCAACCGAGCCT 493237 35 100.0 44 ................................... TAGTTGGAGGCTATTATGAGCAATAAGCATAATTTTGACGTACT 493316 35 100.0 44 ................................... GATTGTAAAAATGATACGATGTATACTGATAAAAAATTTTATTC 493395 35 100.0 44 ................................... ATCATCAAGAAAATAAAGATTATCATCGTACCTTAAAGAATAAA 493474 35 100.0 43 ................................... ACAATATTATGAATTACATGTTTGATATTTTGCACGTATTTTT 493552 35 100.0 40 ................................... AATATATGTATCTATATCCTAAGAGATAAAGAAACCGCTG 493627 35 100.0 45 ................................... CCATGGAGTATACGCTCTTGGCCTTCTGACACCACCCACTTACCG 493707 35 100.0 39 ................................... CTAGTTCGAAAGAGTTAATATTAGATACTACTCTTTTAG 493781 35 100.0 43 ................................... CTGGAGGAAAGTCTTTTACTATTGACGAAATAGCTAAAATAAG 493859 35 100.0 41 ................................... AATATAAAAGAATACATTCAATATTTACGAGAAAACGTAGA 493935 35 100.0 43 ................................... TTAATAACCCTTTTTCTTTCATTATTTTCATTAACATGGAATT 494013 35 100.0 43 ................................... CTAGTGGCCAAGAGTGGAGATTAGATGAAACTACGACCATCAA 494091 35 100.0 43 ................................... GTTAATGGCGTTGTTGGCTGAAAAAGGTATTTCTCTATAATAG 494169 35 100.0 44 ................................... AAACAATACCATTTTCTCTTTTGTAGATAAAGTTTCATCGGATA 494248 35 100.0 41 ................................... TAGAATATCTTGCATCTGAAAGATGTGTGTCTATGCACACA 494324 35 100.0 43 ................................... TGATAACTATTGATTGATAGCGTTTATTGCTACCCTGCAACCC 494402 35 100.0 42 ................................... TTTTAGACCTTCTTTCTCCGCTTGTTGCGGTGTAAATATGAT 494479 35 100.0 44 ................................... TCATTGAGGCTCATACCGAGGAAGGTCTTATTGTTAAGTTGTAT 494558 35 100.0 43 ................................... GCGGTAGAAAAGGAGTCAATCATGGCTAAAACAACTCAAAAAG 494636 35 100.0 43 ................................... AAGCAACTACAGTAGTAGACATCAAAACAGCATTCGCTAATGC 494714 35 100.0 42 ................................... CATGATACGTGATACAGCGTACTACGAATGTGAACACTGCGG 494791 35 100.0 43 ................................... AGTATATAGACATAGAGATAAGCGAACACCTAGAACGCTGAAA 494869 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================================== ================== 42 35 95.5 43 GTTTCCGTCCCCTAATGGGGATCATTTAATTTAAC # Left flank : GAAGCGGTAACTCTTTATCAAACTTCTGTGTAGAGGTATTCTCACCTTCCTCAAGATCTCGACGGTCTACAGCAGCAGCAATATTATCCGCTTCGTACACAATGTATGCATAATCATCATTTTTTAGTTGAGCCGCACTAAGCTCTTTCCCATGATGATACTTCAAACAATGAGTAATACTTTGCTTTAAGCCCATATCGGAAAAATAGGGCTCAATGAAAGCAGCGCCGCGCTTAGAATGTGCATCGGTTCCCTGATTAGCTCGATACACGACTTTGCCGATATCATGAAGCAATGCACCCTTTACCAGTGCATCCCATTTACCCATCACATCGCCTCCAAACTCTACTTAAGAAATAAAAAACCTATTGACTTCATTATATATTCATTTCTGATTAAAACCAATAGAAAAACCATCCGATTTATACAAAAAAAGCCAGTATATTCACTAAAAAGAATATACTGGCTATATTTTTGTACTTATATGAGTTTTTGACATA # Right flank : CCCTGTCTTTGAAACAACAGATATTTACTGGTTCTAAAATACAAAAAACGGCGGAGATTGTAAATCTACCCCAAAAGGCACTTTAGTGAGCTAAAATAATGCCGTTTAACCGCGCCACTATCACAACGGCGCAGATTCGATTTTCAAAAGATTAAATCTAGGTCTATTATAGCACATCACTAGCATTAATGAAAAACATATGAAAATAGAGCCACCTTCTATAAGGTAGCTCTATTGAGGTGCCATATGTAACTTATTTTCAATAATTCATCTGCTCCCGCAGTTTCTTCTTTTTCTTATACGCCTATCCTCCTTTTCCAAATTTCTCTCCACCCTCCTACTTCTACTTTCACCGTCCAACGAGTTATCTCGTTAGGTCTCTCCAGGCGATAAATAGTTCGGCCACGACTTGAGGGTTTTGGCTGAGTTTGATGCGGGCTAGCATTTTTCGCACGTAGTTGCAGTGTTCTAGCATCGCTTCGTTCAGTTTGTGTTTGACA # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTAATGGGGATCATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [64-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //