Array 1 16664-15660 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQQE01000001.1 Escherichia coli strain EP153 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16663 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 16602 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 16541 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 16480 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 16419 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 16358 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 16297 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 16236 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 16175 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 16114 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 16053 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 15992 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 15932 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 15871 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 15810 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 15749 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 15688 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43489-42362 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQQE01000001.1 Escherichia coli strain EP153 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43488 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 43427 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 43366 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 43305 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 43244 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 43183 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 43122 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 43061 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 43000 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 42939 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 42878 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 42817 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 42756 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 42695 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 42634 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 42573 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 42512 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 42451 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 42390 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //