Array 1 814450-814181 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTV01000015.1 Pasteurella canis strain NCTC11621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 814449 28 96.4 32 ...A........................ AATAATAAAATTCTCCAAAAACACTTGAATAA 814389 28 100.0 32 ............................ TCTACAGGAGAGGTAAATTGTTCTATTTATAG 814329 28 100.0 33 ............................ AGTAACTGGATCGGTTAAGAACATAACGTCTTC 814268 28 100.0 32 ............................ CACTTTTATAAAAGTATGATTAAAGACATCAA 814208 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : AGCGGATATTAATCTTAGTCATGATATTTGGAATATTTCATTTGAAAGATCTGAAATGAATGATTCCATTTCGGTCTATATGACTACTAAATCTTTAGAAGCTTTTAATGTGTATGGTAGAAGTGTGAGAGCTAGTATGATGATTCGTTGTAAAGATAACAAAACAGAGATGTTTATTCATTATCCTGGAATTTATTTAGACAATGATTATGTAAGAGTTGAGTATCGCTTGGATAAAGATAAATCGATTAAAGCAACTTGGAATACTTCAACAGATTATGAAGCTACTTTTGTGAAAAAACCTCTTTCAGTGATTAAATCCATGTTTGATAAAGACAGAATGTTGGTGAAAGTATCACCTTATAGTAAATCACCAATCACCTTGCCATTTAATATTTCAGGTTTGAAGGAATCTATTGAACCTTTAAGGAAAGCATGTAATTGGTAAGTTTGTAAAGCCCCTTGACCCAGAGGGGCTTTTTATATTTAGAGATTCAAAT # Right flank : AAATTGCGAAATTATTTGCATAGTTTATCAAAATTAAGTACCATGTCAGCACTATGTAAGTCATAGTTAAGTAGTAACACTTAAACAATTATTTCTAAGAGTTAATAGTACATATTAACAAAGATTAGTGACAGTAATCATTTTGTTCTTTGTAGCAATTTAACTAAAGATGTAGCTTGCCAATAGAACTTGTGCGAGCTTTTTTAGTCAAAAAATTGAGGAGGAGCGCACTATGAAAACATCACACAAACTAACATATGTTGCAAGTTTTATGATAGGCATGGGATCAATTTTGAATATTGGCTCTATTTTCACTCCTATAAATGTACGTCCTGCAAGCGATGATCAAATAAAACTAAAAGAGGACTGGAACGCTGTAGGTGGTTATTTGTATAAAGCAATGAGAAAGTCAGAAGATGCAGGAAAAACAACAGGATGAAGCTGACTTAGTTGCACTGGATAACAACAATGACATAGTTCAAAAAGTTGTTAAAACACCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1517919-1514591 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTV01000015.1 Pasteurella canis strain NCTC11621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1517918 28 100.0 32 ............................ TCATTTAATAATTGAACACTTGCAGCCACCAT 1517858 28 100.0 32 ............................ CATAATCAACATAACTTCACGTTGTGAAAAGT 1517798 28 100.0 32 ............................ TTACGATTTAGTGTATTGGATATATCCAGCAT 1517738 28 100.0 32 ............................ TAAATGTTACAGTAAAAAGGCGTGGTTTTATC 1517678 28 100.0 32 ............................ CCTGTATTGCATAAAAGATTTTAGATAAAAAT 1517618 28 100.0 32 ............................ CGTGGGCTAAATTAGACCAATGGGGGCATTTA 1517558 28 100.0 32 ............................ CTCTTCAAAATTCGGCACTCATACAGATTTAA 1517498 28 100.0 32 ............................ GTTAAAATCAGTGCCGACGATTGTACGTAATA 1517438 28 100.0 32 ............................ AGTCAGAAAAATCCACTACACCTTCTTCGCCC 1517378 28 100.0 32 ............................ ACGCTTCATTGATGATGTTGCAGCATTTACAG 1517318 28 100.0 32 ............................ ACGCCAACGTCAGCGTGAGTATTTCCGAAAAC 1517258 28 100.0 32 ............................ AAATCTGATGGATTCATTATTAGAAGGATATC 1517198 28 100.0 32 ............................ GTCAACGCGCACTTTCCCGCCGGGTAACACGG 1517138 28 100.0 32 ............................ TGGATCAACAAAACAAGTCATATTTTGTAATT 1517078 28 100.0 32 ............................ ACGTGGGGAGTGGGAGTAGTTTGTTAGCTTGT 1517018 28 100.0 32 ............................ TGATATATCTAAGCAATGTGGATGTATGGAGT 1516958 28 100.0 32 ............................ GTTTGTAAATGGTGCAGATATTGAAGATTTAG 1516898 28 100.0 32 ............................ ACTGAGGGTTTAGACGACGATCAGCTTTTATC 1516838 28 100.0 32 ............................ AGTTCTGATTCATTTAATGCTTGCATACCAAG 1516778 28 100.0 32 ............................ AGGTGGCAAATACATTATGCTGTCATCAAGCA 1516718 28 100.0 32 ............................ CGGATCGTTGTTGATAGATTCGGCGATAATCT 1516658 28 100.0 32 ............................ GAAACGCAATCGCATTGAAGATTATCTATCTC 1516598 28 100.0 32 ............................ TTGACGAATTAGCACTAGATTTAAAACAAGGC 1516538 28 100.0 32 ............................ ATAATCTTCTGAAACGCCTATCACTGCAAAAC 1516478 28 100.0 32 ............................ TCAATGCCTTTTAGCTTTGCCAAAACAAGCGT 1516418 28 100.0 32 ............................ AATACCAAAAAATTTGCAAGATTTTGTAGAAA 1516358 28 100.0 32 ............................ TTATTGCACCTTCAGCATCAAGAGCTGCAAAC 1516298 28 100.0 32 ............................ TACATTAAGCAACCAAGCACAGCCTAGCAATT 1516238 28 100.0 32 ............................ TCTTGCGTGTAGATTGAAAGATTGCTCAAGCT 1516178 28 100.0 32 ............................ TAATGCTAGCTTCTCTGCTGCTCTCTTTTGCT 1516118 28 100.0 32 ............................ TAAAAAGCCATAAGTATTTGTTTTTGTAGTTG 1516058 28 100.0 32 ............................ CATTTGTTGCAGTATGAAGTGCGAAACTTAAT 1515998 28 100.0 32 ............................ AATATGCCCGCACGGCTTTATAGTTGTCGCTT 1515938 28 100.0 32 ............................ TTATGTTTTTAATGTTGAATTTGTTATGCCGA 1515878 28 100.0 32 ............................ GTTCCGAAGATGCTAGCCACGGCGATATTTGC 1515818 28 100.0 32 ............................ ACTTATTTGGCAAAAACGTACCGCGCCTGAAA 1515758 28 100.0 32 ............................ AACCTAGCCAAGCCATTTTAATATTTTTAATA 1515698 28 100.0 32 ............................ TGTAGAAGCTAGAGACTCGCTCCGTTCACTTT 1515638 28 100.0 32 ............................ ACGATAGAGCAGTGCAACAGGATTGTTACTTG 1515578 28 100.0 32 ............................ ATAAATTTTCCGCAATCCTCCACCGCGTAAGC 1515518 28 100.0 32 ............................ ATGTGATTCTATTTGCAAGAGGAATTGAGTTC 1515458 28 100.0 32 ............................ TTTTAGCTAACTTGGACAAAAGTGGAGTAATG 1515398 28 100.0 32 ............................ ATTCATTACACCTTTTGAATGGTCATCACGCA 1515338 28 100.0 32 ............................ TCTTTAAAAATCCTAGGATTACAGAATAAAGG 1515278 28 100.0 32 ............................ AAAATCTGGGTTAACATTAACAGAAGTTCAAA 1515218 28 100.0 32 ............................ ATTCTGGCTCATATCAGTCCATTCATGATTAA 1515158 28 100.0 32 ............................ AATACGGTACACCTTCTATATAAACTTTTTCA 1515098 28 100.0 32 ............................ ATGTTTTTTCATCACACTGACTTCTTCGTTAG 1515038 28 100.0 32 ............................ AGTTAGCGTTGTTGTCGCGCTTTGCCCTAAAG 1514978 28 100.0 32 ............................ TTTTGTTGTAGTTCCATCAAATCCTAATTCAT 1514918 28 100.0 32 ............................ ATCTAGCTCTACTGTGATGTGCGTTTGAATCG 1514858 28 100.0 32 ............................ ATTTCAACAAAATCATTTAAGTTTTGCGGAAT 1514798 28 100.0 32 ............................ TTCACTGCGCTTTTTGGTCTGTTTTACTGGAA 1514738 28 100.0 32 ............................ ATGATTCTGTGAGTAAGACCAAATGCTGCCAG 1514678 28 100.0 32 ............................ TTAAACTCTCTTTAAATCAGCATTAAAGAGAG 1514618 28 82.1 0 ....................T.C.T.TC | ========== ====== ====== ====== ============================ ================================ ================== 56 28 99.7 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : AGCTTTATCAACAATTATCACAGGTAGGATTGCAGGATTATGCGTTGATCAGTAGTGTAAATAAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGTCGTGTGCATCGTAAAGGACAAAGTACGATTCGTCGCACAGAAAAGTTCCTGAAGAGTATTGACAAATGGCGTGAAGGGATTCGTGAAGAAATGCAACAACGCCAACAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGCACAAATCAGCGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACTGTGCCACACTTCTAACCTAATTTATAACCCTTTTTTCTAATTGGCTAAATTAACCAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGCTCTTTAACAATTTGAAGAATAAATAAATTTTTATTAATATTATTAG # Right flank : TGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTTGTGCGTAAGACACCTTATATTGCCTCTTCAGATTTAAAAACCATAATGCATTCTAAAAGAGCCAATATTTATTATTTAGAACACTGTCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCTAATACTAGTTGCCTGCTATTGGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAACTATCAAAAGCAGGGGTAATGGTGGGGTTTTGTAGTGGCGGTGGTACGCCTTTATTCAATGGAACGGAAGCAGAAATTGGCTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATCTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1566006-1563998 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTV01000015.1 Pasteurella canis strain NCTC11621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1566005 28 100.0 32 ............................ AATCAGAAGCTGTAGGATTGTTGAAAATTCTT 1565945 28 100.0 32 ............................ AATTGCTGCATTAAGCGGTCAACCGCAGGCGA 1565885 28 100.0 32 ............................ TTTTTATTGTTTATATTGCAGTAATTTGTTTT 1565825 28 100.0 32 ............................ CACTTTCACTTTGTTATCAGTGCTTTTCCCAT 1565765 28 100.0 32 ............................ TCTGGCGTGTTGCAGTCTTCAAATGTTCTAAA 1565705 28 100.0 32 ............................ GGAACTCGCATTTTAAACGTGAGAAGTTGCAC 1565645 28 100.0 32 ............................ ATTATCTTTCCATTGATGAAGTTGAACTTGAA 1565585 28 100.0 32 ............................ AATACTAAAATTCTCCAAAAACACTTGAATAA 1565525 28 100.0 32 ............................ GAAACTTGATTTCAAGAGAGAAAATAATCCAC 1565465 28 100.0 32 ............................ TCGTAAATCGCCAAAAGAAAAAGTGCTAATCA 1565405 28 100.0 32 ............................ AACGCGGGCGCGGCAGAATAAGAATGATTTAC 1565345 28 100.0 32 ............................ ATTATTGCGAAGCTTGCAGAACACTACAAGCA 1565285 28 100.0 32 ............................ AGAGGAACAGATTGAACTTTTTCAAACATTTT 1565225 28 100.0 32 ............................ TGCGACTTGTACTTTCTGATTCGCGCCGGTCA 1565165 28 100.0 32 ............................ ATTAAGACCAAGCCAAGCAGATCTTGATACAT 1565105 28 100.0 32 ............................ GCATATGCCGAATAAGTCGCCATACGACGGTT 1565045 28 100.0 32 ............................ TTGAAATGCACGAGGAAGCTGGCACTAAAGAG 1564985 28 100.0 32 ............................ AGATTTAGTTGTTCTTGATGATATTGAAAACG 1564925 28 100.0 32 ............................ GAACTGGATTAAAGACGATGATTATATAAAGG 1564865 28 100.0 32 ............................ AACAAAGACGTATTTAGCGTGTTTGCCTTTTT 1564805 28 100.0 32 ............................ TAATTTTAAAGCAAGTTCTGAAATTCCGTTTA 1564745 28 100.0 32 ............................ GCTTCATCCTGCCCGTGCTTACCAATAAACCA 1564685 28 100.0 32 ............................ GAACAACAAAGCGGGCTATTGCACACAAATCA 1564625 28 100.0 32 ............................ TGTTTCGTTATCCAGCGACTGAATCAAGCGCA 1564565 28 100.0 32 ............................ AACGAAACCAATGCTCACTTGATTTCCGTTAG 1564505 28 100.0 32 ............................ TTGCGGGTAAAAAAATCGCTATTAACCGTCCA 1564445 28 100.0 32 ............................ TTATCAATGCCCTGCAGATGTTTTGACGGTCG 1564385 28 100.0 32 ............................ GCGTGGGATAATCGTGTTTTCTGTCACCCTCA 1564325 28 96.4 32 .A.......................... ACTTCCTCCCCCGCCGAATTTTTGACGCGTTT 1564265 28 100.0 32 ............................ ATTAACCCATCAATTATGTTATCAAGTCCCGT 1564205 28 100.0 32 ............................ GTGCGAAGGGAAAAGTGCGGTGGTTTTTGTCG C [1564195] 1564144 28 100.0 32 ............................ TCAAGAAAGCATTATTTTTAAGTTGACATCTT 1564084 28 100.0 32 ............................ ACATGGGTATTTAAAAGCGATTGGCGGTACAT 1564024 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================ ================== 34 28 99.4 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCAGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGTGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCACGTACTATTGAAGGTCTAGAGCCTCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAATCAGCAAAAAGCAAAAAGCACGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAATACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTCAGCCAAACTGATTAATTTATTATACAGGTAACCCTTTTTTCTTAATGAGTTTTTTATCTAATAAAATCAAAGGGTTATTTTTATAGCTAAAAAAAGGGTTTTTGTATATAAAATGTGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCAAA # Right flank : CGGAAAATAAAGCATCGGATACTAATTGTTGTGCAAGCCAGTTTAGTTTGTTTTGTCTATTTTATCGTTGTACATTTTGTTTTTAACTTGATAAGAAGAACAAAAAGACAGCCGCACTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAACGCGTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCGTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAATAATGCTTGCCCACCAGCTTCGGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATTAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCTAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //