Array 1 97876-99795 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGP01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033863 CFSAN033863_contig0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97876 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97937 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 97998 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98059 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98120 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98181 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98242 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98303 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98364 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98425 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98486 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98547 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98608 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98669 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98730 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98791 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98852 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98913 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 98974 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99035 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99096 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99157 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99218 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99280 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99341 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99402 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99463 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99524 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99585 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99646 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99707 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99768 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115928-117159 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGP01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033863 CFSAN033863_contig0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115928 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 115989 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116050 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116111 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116172 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116233 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116294 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116355 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116416 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116477 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116538 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116599 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116661 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 116722 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [116764] 116764 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116825 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116886 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 116947 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117008 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117069 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117130 29 96.6 0 A............................ | A [117156] ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //