Array 1 110325-110988 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLVJ01000012.1 Acinetobacter calcoaceticus strain JUb89 Ga0304794_112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================== ================== 110325 28 100.0 32 ............................ ATCACGTTGTTCCGCTTTAACATTCGCAGTTG 110385 28 100.0 33 ............................ AAGTTTCGGTTACGCTCATGCATTCGCTTTGCC 110446 28 100.0 32 ............................ ATCTGCATTGGTAGAATCGAATGCAATTGATA 110506 28 100.0 32 ............................ ATTCTTCGGGATGCGTTTCACTTGTAGCGCGA 110566 28 100.0 33 ............................ TTCACATAATCGTCACCTAACAACTTTTTACGC 110627 28 100.0 32 ............................ TCGTAGCATCAGAAAGCGTTCAATTGAATAAG 110687 28 100.0 32 ............................ AAATAAGTCGACCAGTGTTGCTGTATATCGAA 110747 28 100.0 32 ............................ TAGTTTTTCACCCCCACTTAAGGCTCAAAACC 110807 28 100.0 127 ............................ TGTAATCTGTTCAGGTGGCTTAGATACATCAAGTTCACTGCCTGAGCGTGTTTTAAAGTGCTTCTTTAAAACCCAGCGTAAAGCAGTTTAGAAAACGATGGAAAAACCTGAATTCAGGTTTATTTAG 110962 27 92.9 0 .....-...G.................. | ========== ====== ====== ====== ============================ =============================================================================================================================== ================== 10 28 99.3 43 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGTTAAAAAACCTTAAGCTTCAAAAATGGTTAGATCGATTGACTGATTATGTGCATATTACGTCTATTCGAGAAGTCCCGCAGGACAAGATCACGGGATATGTTTGTTTTCAACGAAAGCAAATTAAAACCAATGCGGAAAGATTGGCGCGTCATCGAGTTAAACGTGGCGATATTGATTTTGATGAAGCACTCAAACGCTATCAAAATGTTGTCACCACAACCGATCTTCCTTATATACAAATGAAAAGCTTAACCTCCGATAAAAGTTTTAAACTTTTTATCGAAAAGAAAAATTCGGAAAAAAATTCTGTACAGAAATTTAGTACTTATGGATTAAGCGCAAGTGCTTGCGTACCAGAGTTTTAACCCAATTTTTTTTCACTCTTTAACAGTCTAATAAAATCAATGGGTTATAACAGCGCCTAAAAACTTGGGGTAAACTTGGGTTTTTATAGTTAAAGTGCTGTTATAACTTGTTTTTTTGCTATAAAATTACA # Right flank : AATATGGATTTTGGGGTTTTCCGATTCATTACAGTTCACTGCCTGAGCGTGTTTTAAAGTGCTTCTTTAAAACTCAGCGTAAAGCAGCTTAGAAAACGATGAAAAACCTGAATTCAGGTTTATTTAGGTTCACTGCCATAGCGTATTTAAAAGTGCGTCTTTAAGACTTCGCGTAAAGCAGCTTGGAAATATACAATGGCAGGGTGGGCGGAAGTACATTCCTGAATATCATATGTACGATTAGGCATTTTAACGTGTAGTTTCATTTGTATAACATGATGGCAAAGGTTTAGACATGAATAAGAAAGTAGTTGGATTAATCGTTGTTGGGATTATAGCGGTGCTGGGTTATTTAATTGCCTCACCCTATATCGTACTCAACAATATTAAAAATGCCGCTAAGGCTGGGGATAGTGAAAAAATATCGACTTATATTGATTATCCAAGTGTGCGTCAAAGCTTTAAAGATCAAGTCAATGCTTATATGCTCAAAGAGATGT # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.98, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30573-28201 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLVJ01000019.1 Acinetobacter calcoaceticus strain JUb89 Ga0304794_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30572 28 100.0 32 ............................ ATTATCTGCTTTATATTTTACAAACTCTTCTG 30512 28 100.0 32 ............................ ATTTGCATTCTAAGGAACTTTAGGATAGTGCG 30452 28 100.0 32 ............................ TTAACCTATCGAGTAGACAGCGAAACTATCGA 30392 28 100.0 33 ............................ TGAGTATGAGTATACCGAGTATACCGAGTACGA 30331 28 100.0 32 ............................ ATTTAAGCTAGATTTATCAAATGATTGCCCGA 30271 28 100.0 32 ............................ AACCATTATTAACAACAGTTTTTGTTGTGATT 30211 28 100.0 32 ............................ AATCAGGGCAATTGAATCGTATTGTAAGCCCA 30151 28 100.0 32 ............................ TGCATCTCGTTGCTCTTGATTTGTAGACCATT 30091 28 100.0 32 ............................ TACATAGCATTGTTACTTGCGCAGCCGAAGCC 30031 28 100.0 32 ............................ AACATAAGGGTGATCAGTTATTTCATCACTAA 29971 28 100.0 33 ............................ AATCGATAGAAATATCGCGCTAACATCCGCGGA 29910 28 100.0 32 ............................ GTCTGTCAGTGCTTTCGTGCGCTTTGCAAGTT 29850 28 100.0 32 ............................ ATAGATACGGATGTAATACCCGCGTTTAATCG 29790 28 100.0 32 ............................ AATTTGCTATAGTTTTGTAAGACGAACTCACA 29730 28 100.0 33 ............................ GTATTCACGGGCCGCAATGGTCAAGCCCGCCAC 29669 28 100.0 32 ............................ ACGATGAATATGATCGGTTCTTTGGGATCATT 29609 28 100.0 32 ............................ AAACACCGCAGCACCTGGGGCGATCATATCTA 29549 28 100.0 32 ............................ TGCGTATGGCCCTCGGAGGTTCCGGGGGCGCC 29489 28 100.0 32 ............................ GTTCAACCGAAGCCAAGAAAGTGAGGCAGATG 29429 28 100.0 32 ............................ CGATGAAGCAGGGCGCGACCCCGCACGAATTA 29369 28 100.0 32 ............................ ATACCCCACCTTTTGAATCTTGGTACCACAAA 29309 28 100.0 32 ............................ AATATTAATTGTTGATGACCTTGATTCGGCAT 29249 28 100.0 32 ............................ ATTTTAAAATATAGAGAATTAAATCATGGCTG 29189 28 100.0 32 ............................ ACATCGCTAAGCAACACCAAGCGCCTAAGACC 29129 28 100.0 32 ............................ AACGACTAAGAACGTGAGTAGTTATAAGTTCT 29069 28 100.0 32 ............................ TTAGCCAGTCTTAGCGTGTGCTGCCCGCCAAT 29009 28 100.0 33 ............................ AAACCCAACTATTGCAGCGATTGCCCGTTTTAA 28948 28 100.0 32 ............................ CAATGGTCATCAGCAGCCCCTAGAAGCGCGCC 28888 28 100.0 32 ............................ AAAATGATGAGGCTTTTCTTGAAGCTGCGGAG 28828 28 100.0 32 ............................ ATTATATGCATTCTTCACGCCATTAGCGAAAT 28768 28 100.0 32 ............................ TTTTGTGATTGCAGTCAGTTACTTGGCAGGCG 28708 28 100.0 32 ............................ ATAACACCAGAGAACTCATCAATGAATTTTGA 28648 28 100.0 32 ............................ AAACTCAAATTTCTCAGTAGGATCACAGACAA 28588 28 100.0 32 ............................ AGGTAAAAACTCTGCAATGACTAAATACCCTA 28528 28 100.0 32 ............................ TCATCAACTATGATGATATCATAGATTGTTTT 28468 28 100.0 32 ............................ TTGCACCACTGGACGGCATAGGCTATTTCGTA 28408 28 100.0 32 ............................ AAATTTGTAGCATTCACGCCAATGATTCTCAT 28348 28 100.0 32 ............................ ACTGCTGCTATAGCTTAGACGGTCAAAATGAA 28288 28 100.0 32 ............................ ACAGATTGGCAAGTGCGCCGTGAATGGCTTCT 28228 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTTTGAAATCAATGACTATTTGATACGTAATGCACCATCCGTTGACAAAAATGAGCCGTGCTACTGCGTAAAGGAATGGATTTATGACCTTGCTTGAGTGAGTTTTAAAGTGCTTCTTTAAAACGAAGTGCAAGGCAACTTAGAAAATGAAAAAACCTGAATTCAGGTTTTTCTCGTTGCATCCGCTCTGCGGTGCAATGCCAAACCAGTTTACGATTTGCCTTTAAACAGGTGTTTTGATATTTCCCTAGATGCTGTATCAACACCAGTCAACTAAACTTGCAGTATGTTAAATCCAGTAGATCAGTAAGAACGAAAATAGACTTTAGTTATCTGCAGAATTATTTTGACATCGATCTCAATTTACCCCAATATTTAAACACTCTTTAACAGCTTATTAAAATCAATAACTTACAACCCATGTAAAAATATTGGGTATTTGGGCTTTTTAAAAGCTATCTCATTGTTATATTATGGTTTGTTGCTAAAATTTTATA # Right flank : ATCTAGGTTTGTGCAGTATTCAAATAGTCCTTCACTAATATTTTTTATATAAAAACACGATCTAAAAGAATGTGTTGGGTGTTAGTATTGAGTCGCTTAAAACTTACTAAATGGTAAATAAAATGGAATTACCCCTAACATCAATCGAAACTTGGAAGGTGCTTGGTTTTGATTGGGTTAAATTGATTGGTGTTTTAGATGGTCGTAGTTGTTTAATTTGTGCATGTCTTGATGGTACTGTAGTTAAAGTTGCAGAAGCGAACAGACTTGCCAAAACTCATAATGATTGCCGTTGTTGCCTTGTTGGTTGTGATGAAGATGGTGATATTCCTGGTTTGAGACCGTTCGTTATGCACCACAAACCAGTCAAAAACATTCCAAAAGATCAGCGCGATGGAAGGATTGGTCAGGTTGATGCCAATACCATGTTTGTAAATTGGTTCGATAAATGTCACCCAGAGTTTCAACTTGAATATCTGGATGAGTTTAGATTTAATCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 109369-111200 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLVJ01000005.1 Acinetobacter calcoaceticus strain JUb89 Ga0304794_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 109369 28 100.0 32 ............................ ATGTCCCGGTTGAGGATATTAAAAACGTCAAT 109429 28 100.0 32 ............................ ACTGTGTTACCCAAAATCCTAGCTCCACCACC 109489 28 100.0 32 ............................ ACCGAGGAATTGGCCGCGGACGATTGGTATAC 109549 28 100.0 32 ............................ ACGCAAGAGATGTTAGGCTCTATTGCTCGTTG 109609 28 100.0 32 ............................ ACAGCACTTTCTTATGCGTGTAGCTATGGGCT 109669 28 100.0 33 ............................ GACCCGCTGCCGACAGAACTACCCCAACCCCAA 109730 28 100.0 31 ............................ AATTTACTTAACACGTTTATTTTTTAGGTTT 109789 28 100.0 32 ............................ AACAAGTATAGTATTAAATAACACTTAGATAA 109849 28 100.0 32 ............................ AGTAGCGCGGGGACCATTGGTGCGGTCGCAAA 109909 28 100.0 32 ............................ GAGTCCAACCATTAACAACCAACCCGAAATCA 109969 28 100.0 32 ............................ TTCAAGACCACCTGATCTATAGTCATCAATCG 110029 28 100.0 32 ............................ ATTGCTTAGTGCCCGCTGTGCCGGGACTCTGA 110089 28 100.0 34 ............................ CAATGAATGCAAGTTTATACCAGGTTGGCGAGGT 110151 28 100.0 32 ............................ TGCTGAATATAATAAAATTCGTTATGACGAAT 110211 28 100.0 32 ............................ TTCTGGCGCGAAGGCAGCTCAGACGCAGCGTA 110271 28 100.0 32 ............................ TTCATCACAGCAATGCAGATAGATGAATCGGG 110331 28 100.0 32 ............................ AATACGGCACTAAGTAACCTTGACCATTGACA 110391 28 100.0 32 ............................ ACAACCACCACTGATTCCATACCCATATCAAA 110451 28 100.0 32 ............................ GAAGTTAAACTGGTAACTATGCAAGCGACTGA 110511 28 100.0 32 ............................ ACTTTTTTCGGGTTAGAAATCCCATCATTCGG 110571 28 100.0 32 ............................ TTTAGTGGTTCTTTGAAGATCGAAGAAAATCC 110631 28 100.0 32 ............................ TAACCGCTCACTTGGGTAACTTGGGTAAACAC 110691 28 100.0 32 ............................ CCAGTCTTGGTTTACCTGATTTGGCAACTTGA 110751 28 100.0 33 ............................ AATAAAAAATATCGGATAGTGCCAATATCCCCC 110812 28 100.0 32 ............................ TACAGGTTGATCAACAGTAGTTCTAAGCTTTT 110872 28 100.0 32 ............................ AACGTTAACTTTAAATTGAAAATAGCCCCCAT 110932 28 100.0 33 ............................ ATAGCGTTGTTTTGAAACTCTGTAGAGTTTTCT 110993 28 100.0 32 ............................ GATTGCCGTCGGGCTTTTTTTGTGTCTGGAAT 111053 28 100.0 32 ............................ AGTAGGTCAAGCTTTCGGGTCCATCGACCAAC 111113 28 100.0 32 ............................ TTCATGGCTTCTACCAACTCAGCGTTTCTGTT 111173 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 31 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGATCAATGACACGCATGTATGGCTAGCTGAAAGGTTTGCATATCTCAATGAGGATTTATTTATGTTGAGCAAAGAGAAAATTAAAAAAACAGACTGACAGCGTTGTTATATTCACTTCGCGATGCAAGATTAGAGACATTTAAAGACAAATTAATTGCGTAGATTTAAACTCAGCCTAACGTAGCTTAGAAAACACTGATCATGTCATATCCAGCCGTTTCATTATTTTGAAAGTGACAACTCACTTGTAATTCATCTTTAGGTTGAAGATTTAATTGTGAATATCCCTAGCCCTTATATCAGTCCGTTAAATTGCTCTGAATGTCATTTTTTGGATAGTAATATTTTGACAACGCTTCCGATTTACCCCAATATTTAAACACTCTTTAACAGCTTATTAAAATCAATGACTTACAAACCGTATAAAAATATTGGGTATTTCAGCATTTTTATCGCTATCCCTTTGTTATTTTATGGTTTGTTGGTAAAATTCTACT # Right flank : AATGTCTTGCGGTATGCCTCAACGCCCATCTGAGTTCACTGCCTGAGCGTGTTTTAAAGTGCTTCTTTAAAACTCAGCGTAAAGCAGCTTAGAAATAACTTTGTAAGTTCATCAAGCTAAGTTTCCATGCAATAAAACTTGTCAGAATTTGTACCTTGTCAGTTAAGTAAAAATTTTGGATCTTCAAGTTAAATAATTATTTTTAGCCAATATTTTAAAATCCTCCCCCTTGCGCAGCGGTGCTGCTCACCTTTTTCTAAGGAGGGAGCGCTGTGTATCCAATTAGGTGTTGATTTCAAAGGGATTCCCCTCTTTGGCAAAGAGGGGCTAGGGGAGATTTTCGGTATAGGAATTTAGCCCATGGCATGGTTTTTATGTTGATGATTTCGGTCGAAATTCAACTAACTTGCATTTATCTGGCTTAGCTTTTTCATTAGTGAAGAGTTTTTATTGCTAGTTTAATTTAGTATGGGAACTTATTTATATTTCGGTCTAATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //