Array 1 98221-95506 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAZ01000107.1 Escherichia coli strain 1279 NODE_10_length_187368_cov_80.542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98220 29 100.0 32 ............................. CTCGGGCTGCACATTGACAACGTAGATCCGCC 98159 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCTGTCA 98098 29 100.0 32 ............................. TCGAGACTAGCAACACGATTCGATGCGGTGAG 98037 29 100.0 32 ............................. CGTCTGCTTTCGTTGGTGTGGTTGTCCGTGCA 97976 29 100.0 32 ............................. CGCGCGGGCAGCTCCCTCCGCTCCCTCCTGCG 97915 29 100.0 32 ............................. ACACACCAAAATATTCTGGTGTTTGTTAAGGG 97854 29 100.0 33 ............................. AAATCCAAAAAACTGGGGTATGGTGGCGTGTGG 97792 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 97731 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 97670 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 97609 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 97548 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 97487 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 97426 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 97365 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 97304 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 97243 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 97182 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 97121 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 97059 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 96998 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 96937 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 96876 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 96815 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 96754 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 96693 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 96632 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 96571 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 96510 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 96449 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 96388 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 96327 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 96266 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 96205 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 96144 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 96083 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 96022 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 95961 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95900 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95839 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95778 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95717 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95656 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 95595 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 95534 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125355-123922 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAZ01000107.1 Escherichia coli strain 1279 NODE_10_length_187368_cov_80.542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125354 29 100.0 32 ............................. TGATTTATCTGGAAGACTTTACTACTAACAGT 125293 29 100.0 32 ............................. GTGGTAAGAAGTGGATCTTTAACATCATCGGT 125232 29 100.0 32 ............................. CCTGGCTACGGCAGGCGTTAATTAATAATCCG 125171 29 100.0 32 ............................. CAATTTTGGCAAGTTGCGATACCCAGGAACAA 125110 29 100.0 32 ............................. AATGCGTGTCTGCCGCTGCTGAGTTTTGCTGG 125049 29 100.0 33 ............................. CATTCATTACCGAAAATGATATAGGTCAATGAA 124987 29 100.0 32 ............................. ATCCGCAACAGTGATGTAACGCTGATTACTGA 124926 29 100.0 32 ............................. GAAATTTCGGAAATTAAATCCGCTCGCGATCG 124865 29 100.0 32 ............................. ACGGTCCACGGCTCACAGGATCCGTGTGTAAA 124804 29 100.0 32 ............................. AGCATCTTCAATAGTGATTTTGATACCCTCGG 124743 29 100.0 32 ............................. TATTAAATGTTAAATATTCCGACCCGCCTCAC 124682 29 100.0 32 ............................. CCCCCAACGACTAAACGCAGCCTCGATTGCCA 124621 29 100.0 32 ............................. CGTTCTTCAAACGCCACCTGGTCAGTGAGTGC 124560 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 124499 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 124438 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 124377 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 124316 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 124255 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 124194 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 124133 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 124072 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 124011 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 123950 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATATAAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //