Array 1 50489-49733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXD010000010.1 Listeria booriae strain FSL L7-0370 NODE_10_length_115617_cov_48.569785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 50488 30 96.7 35 .............T................ AAATCGTGCTAGCATGAAGCGTGATGAACTCAGAA 50423 30 100.0 37 .............................. AAGAGCGGGTTGATAATCTGATGAGCCATTTCGACAT 50356 30 100.0 36 .............................. AACATGGTCGTATACACAGCATTGAATCGCTTCAAC 50290 30 100.0 36 .............................. ACACGAACGTTTAAATCTGTTTTGACAGAAGTATCA 50224 30 100.0 36 .............................. CTATATGCTAGTGGAGTTCCTCCAAGACTGTTATCT 50158 30 100.0 36 .............................. ACATTTTTTTGGTGGCGATGATTAGTTCACCCTTAA 50092 30 100.0 34 .............................. TCCAATAAAAATGTAGGAAGTAATCCGCCCCAGT 50028 30 100.0 37 .............................. CCTTTTTCAATATTGTTTTCAAGAGTGTCGTACGTTA 49961 30 96.7 36 .............T................ CAGGTTGGAAACAAGTCCCGCATGCTAGTGATCGCT 49895 30 96.7 37 .............T................ GATTGCAAGCATTTTTCGAAAGCAAAGGGCGCAGTTC 49828 30 96.7 36 .............T................ TTGGTTGGCACAAAATCAAGTGCTTGTCCGAAAAGG 49762 30 76.7 0 .............T...A..C..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 97.0 36 GTTTTTATCTAAGCAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGTTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGAAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGTAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 230986-228397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXD010000003.1 Listeria booriae strain FSL L7-0370 NODE_3_length_292954_cov_52.460798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 230985 30 100.0 38 .............................. ACGAAAAACTCGCCCCACTTCACTTCTTGTTACTCTTC 230917 30 100.0 36 .............................. CAACAGGTGGCGACGAAAGAATCGTTCAGCCAAAAA 230851 30 100.0 34 .............................. CAATGTAGGCATCATTGGTATAATTGAATGTTTT 230787 30 100.0 36 .............................. TTCTTTCTCAAATGAGTTTCACTCGACTACAGAAGA 230721 30 100.0 34 .............................. CACAGAGTTAGTAATCACAATTTTTGAGCTTGCG 230657 30 100.0 37 .............................. ATAGCTTGGTTGATAGGACTGTTCAGCCCCTCTATGA 230590 30 100.0 36 .............................. GTAGAAGATAAAACAGAACCAGCACAACCGAATAAA 230524 30 100.0 35 .............................. CCGGAGACTGTTTATCAGTATGCTACAAAAGTGAG 230459 30 100.0 35 .............................. CTAGCCACGTATGCACGTTGAATTCATTACAAAGT 230394 30 100.0 34 .............................. CTGGTAAATCAGATTCATCTAGGGTCGGCATTGG 230330 30 100.0 35 .............................. ATCCAATCTTATATCATTGCGACTGTACCACTTAA 230265 30 100.0 35 .............................. CGTCAAGCAGTGTCAATGAAAGGTCTGTTAAACCA 230200 30 100.0 37 .............................. TCGCTAAATTGATGTAATAGTGCCACTGCAAAGTTGC 230133 30 100.0 34 .............................. ATATCAAAAAATCAATAACAAAAGTGCTAGCACA 230069 30 100.0 37 .............................. TCTGCACCTGCGGTTGACCCATATTATTTTGGTGCTA 230002 30 100.0 36 .............................. TAGACACACGACACCGCAAAATTAGAGCTCTTTTTT 229936 30 100.0 36 .............................. CTTCCTCAATCAAATGCGCATGTTCAAACTCGAAAG 229870 30 100.0 35 .............................. TAAACTAGACTGTACTTTAACTAGACTGCATTTTA 229805 30 100.0 39 .............................. TTTCAAAAGCATTGTACGCCCCTAGCCCGTAAAGCATGA 229736 30 100.0 36 .............................. AGCTACGAACTGGATGTATACAGGTATCACAAATGA 229670 30 100.0 37 .............................. AGCCTTTGCTTTAGGTGCAACACGCTGGCGGTATTCA 229603 30 100.0 36 .............................. GCATTCAACAGCTCTTTGTCAGACAGCAAGCTGTTT 229537 30 100.0 36 .............................. GTGCTAGTTATTGAAGAAGATAAAAGGCAAGAAATC 229471 30 100.0 37 .............................. ACGAATGGGAATGTAGAAGTTGTTGCAATCGGTGCAA 229404 30 100.0 34 .............................. GCTAATCCAACCAAGAAGCTATATCCGCAAATTG 229340 30 100.0 36 .............................. ACTTTTAAAATGCGGTTACTACGGCAAGGAAGTAAC 229274 30 100.0 35 .............................. ATGTGTTTCGTAAAGCTTGTTGGGCTTCCTCCATC 229209 30 100.0 36 .............................. AAAAGTGATTGAGTTTGAATCGATTCGTAACGTAGA 229143 30 100.0 35 .............................. ATCAGTCGTGTGCAGGTGTGGGAGATTATATCGAC 229078 30 100.0 35 .............................. TCCTTGCTCCAGTACTTGTTTTTGCTTCAATACAA 229013 30 100.0 37 .............................. ACGACGTTGAACGCAATCAAATAACTAATCCATATGT 228946 30 100.0 34 .............................. CCTCTTTGATAATATCTTTCGTTCATATAATTAA 228882 30 96.7 36 .............................A TCGGATACAAGAAAGGCGAAGATGGAGTTTTGGCTA 228816 30 100.0 36 .............................. ATAGTTCCGGTTTGCTTGAGCTCGCGATCCTGGATT 228750 30 100.0 36 .............................. TGTTACTGATACGTCATTAGAGCTCACGGGATTGAT 228684 30 100.0 36 .............................. TAAAAATTCACCGTTTCTTGGAACTTCATCACCTGT 228618 30 100.0 36 .............................. GATGGACGAATGACGAGTTCCACATATAAAGGAATA 228552 30 93.3 35 .................A....G....... CCAATCCACCAATTTTCAGTTTTACGGTGTTGCTC TAAA [228532] 228483 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [228427] 228426 30 70.0 0 ......CC.G.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 98.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTAATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCATTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAATTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGGTAAAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCGCGATAATCATTAACATACTGATCAAATGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGTTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 147682-148302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXD010000001.1 Listeria booriae strain FSL L7-0370 NODE_1_length_1253759_cov_48.863260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 147682 30 100.0 34 .............................. TTTTATGTTGTTGAATTCAACATAGCCGCCCGCC 147746 30 100.0 35 .............................. TTTTTTAAGGTCGCTTAAGAACTCTGTCATCGGGC 147811 30 100.0 37 .............................. GTGTACTGCTCAAGTAAAACTCTGACTGAAACATTTA 147878 30 100.0 35 .............................. CACGACTGGTCCGCATCATTGAGAGGCGTTCGTGG 147943 30 100.0 36 .............................. CTTGTTGAAATTGTAACAGGTGTCAAAGAATTTGTG 148009 30 100.0 34 .............................. ACTTAGAGCTTAAATCTCTTAAAACTTTTAAAAA 148073 30 100.0 36 .............................. AAACTTTTATATTATAACTAGTTTAGGTGTTTTTAT 148139 30 100.0 36 .............................. ATCGTTCCCCATTCACGATTGCTTAACGTCGCAAAG 148205 30 100.0 39 .............................. AAGAATCGCAACTGGCTTACTTAAAAATTCCATAAATGC 148274 29 83.3 0 .................A..-...C..G.C | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTGGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : CTAGATTGCTCACAGATGCAGTGTTTCTATCCATTTTTACAGAATAAATTATCATTTAACAGCCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCAAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGGGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCTGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCACCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //