Array 1 198-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCC01000011.1 Pseudoalteromonas ruthenica strain S3138 S3138_S33_L001_R1_001__paired__contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 197 28 100.0 32 ............................ TCAACAAGGGGGCAGAAGCAGTCAGCGACAGT 137 28 100.0 32 ............................ AGGTTGGCAAATTTAAGATTGCTTCTCGAGAA 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GTACCAGAAGACGTAACATGGGTGAGTTTTACTCGTCAGCATGTTAAATCACCTGGGCGTATTGATCGTGAGATGCGAGGAAAGGCTGAACGGTGGTCGGCTAAAAGTGGTAAGCCTTTAGTTGAATGCTTAGCAGAGCTAGAAAGCACCAAACCTTCTTCAAAATGTGACTTACCTTTTGTTTATTTACATAGTCAACAAACAAAGCAACGTTCACCAGACACCAATAGTAAATACCCTCTGTTTATTGCGTTAGCAAAAGTTGAAATTGACCAACAAGGAGTTTTCGATTGTTATGGTCTTAGCGCAAAATCAAATGGAGATAGAGAGTTGGGCTGTGTGCCACAGTTCTAACAAATAAAGGATTTTTTCCCCTTTATTTTTGTTCTTTAAAAATTTGCTTAAAATACAGTGTGTTGCAACATCCTGTGAAATTAAGGTGAAACTGGGTTTTTATCTTAATAGCTTGTTGCAACTTACTTTTTTTCATTTACTCTATA # Right flank : ATGCTGGCCTTTCTTACTGTGAACGCTATTTTTCTTCACTGCCGAACAGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12375-12100 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCC01000043.1 Pseudoalteromonas ruthenica strain S3138 S3138_S33_L001_R1_001__paired__contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 12374 28 100.0 32 ............................ TTGTCTCGGGTGCGGGCAGGGTCGAAACCAAT 12314 28 100.0 32 ............................ AGCCAAAGGCACGGGGCGCTTCCCCTAGATGA 12254 28 100.0 32 ............................ GTTTAAATTTCTGATGCACGATAACAACGGGC 12194 28 92.9 39 ................AT.......... TTTATAATTTATAATTTGTGAGCCATGATTGTCTCTAAT 12127 28 75.0 0 ...T.....T...T.....C....TC.G | ========== ====== ====== ====== ============================ ======================================= ================== 5 28 93.6 34 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : AGCTTAGAAATATCAATTTGGAGCATGTAAGCGCCGCCGGT # Right flank : TGGGTTTGATGTTTTTGAGTTGTGTGTCGTTGAGTGGTTTAACCGTTTTTGCCATATCTACTATTCCCTGAAGGCCTTTAAACTTAAGGCTTTGGCGCAGCGACGTACTACGAGAACGAACACTATGTACTAACTTAGTACATGAAGCAGTACATAAACAACTGAATTTCAAAAAACGTGGGCGTACATTACAGGCATTAAAAAACCCGCTAAGTCTTTATTCTCAGCGGGTTTTAAACGTTTTCGAACTTAATCGAACAGTGAAGTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGGAAAACCTCGACCATCGGTCCTACATGTTTAGTGTCGTCTTTTGGTTAACCTTTGAGTCTCGGACGCACACGATAAACAAAGGCGAGGCCGCTTAGTTTTAACCCTTCAACCCCGGCCAGGGTTTCCGTAGCGAGTCTGTGTAGGGTGACACTTCAGAACCGGGTCCACAGACATACACCGGAGAAGTGCTAGCGGGCTAT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 52-679 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCC01000052.1 Pseudoalteromonas ruthenica strain S3138 S3138_S33_L001_R1_001__paired__contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 ............................ GGTTCAAGAAATCTTTTGTATTTTAGTTTATT 112 28 100.0 32 ............................ ATCGATAAACAGGTTTTGCGCAAATTGGTGGC 172 28 100.0 32 ............................ TGTTCGCCCTGATAACGTGCCAGTCACTTCTG 232 28 100.0 32 ............................ TTCTGAATCTTTATCTAATCAACGCAATAAGA 292 28 100.0 32 ............................ TTTGAATGTTGAACACTTCGTTTCTGTCTTTG 352 28 100.0 32 ............................ TGCTGCTCGACAATATCCTCATCTGATAATTC 412 28 100.0 32 ............................ TTCTGGAGAAACTAGCCAAAGAGAGGAAAATG 472 28 100.0 32 ............................ TCTCAAACTCTCCAAGAGTGCACAGGTTATGT 532 28 100.0 32 ............................ AGCCAGCAACCGACACCCTCAGACATGATTGC 592 28 100.0 32 ............................ TGACTTAATGATTAACAACACAACGGGCAAGT 652 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : ATAAATTTAAGCTTATAAATTATTATTTGGGCACATCCTGTTAAATTAAGTC # Right flank : AGCCTTCGCGCTCGTAGACATCAATGTGACCCCTTCACTGCCGAACAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51-498 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCC01000055.1 Pseudoalteromonas ruthenica strain S3138 S3138_S33_L001_R1_001__paired__contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51 28 100.0 32 ............................ ATACTTAGCTCGGGCCGCTTCTGAACCTTCTG 111 28 100.0 32 ............................ TTTGGAAAAGCAATAAACGTTAATGCAGTGAA 171 28 100.0 32 ............................ GTCAGCATTCAAATAAACACACTGCAAAGCAA 231 28 100.0 32 ............................ AAATGCGGGGCAAACTGCAATCAAATTTAGAG 291 28 100.0 32 ............................ ATCGCACCCCCGTTGAAGTGGTGAACGGCAAG 351 28 100.0 32 ............................ TCGAACAACTCGCGGATTACATCACGGCCAAG 411 28 100.0 32 ............................ TTAAGAATGTTGCAGAGGAAGTATGCGAGATG 471 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GAACAGGCAGCTTAGAAATATAAAGAAGCTTACAACGCGGTGCTGTGTGCC # Right flank : AGGTAGACCTTGTTATGATTGCTACTACAGAAGTGTACTGCCGAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 274-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCC01000090.1 Pseudoalteromonas ruthenica strain S3138 S3138_S33_L001_R1_001__paired__contig_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 273 28 100.0 32 ............................ TACTCCCAAGTAATGGCAATAGGCAAGTTAAA 213 28 100.0 32 ............................ TGATGACTGTGAGTAATATTTACAAGACTCAC 153 28 96.4 32 ..........T................. TTATTTATGTTTTAATCCTTTCTTATTATAGT 93 28 100.0 32 ............................ TTAAGAATGGAGCAGAGGAAGTATGCGAAATG 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : | # Right flank : AAGGTA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48817-48572 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCC01000008.1 Pseudoalteromonas ruthenica strain S3138 S3138_S33_L001_R1_001__paired__contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 48816 28 92.9 45 .......................G.A.. GATTTAGTGTAGGTAAGGCTTTTAGCCTTACAAAACAAGTTTCTC 48743 28 100.0 43 ............................ CGGGATTGGGCCAAGCCCAACCTACAGTTTAGGTTGGTTTGTT 48672 28 100.0 45 ............................ CGAGATTGGGCTAAAGCCCAACCCACAGGTTCCGCCAGATGTGTT 48599 28 85.7 0 ......................C.CCT. | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 94.6 45 GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Left flank : CAAGTTTGCGTGAATTAAAGCAGCTTGCAAGCACTCATGGCTTTGCTGATATCGCCGCAAATGAAGAAGATGCTGACACCTTATTACAGCTGCTATTTTGCATGGTGATAGAGCCGACGATTGGCCAGCAACAGCCGTGTTTTGTGTATCACTTTCCGGCCTCGCAAGCGGCACTAGCGCGTCTTCATGAGCAAGACCCACGCGTTGCCGGGCGTTTTGAGCTGTATTACCAAGGGCAAGAGCTCGCTAATGGCTTTAATGAGCTGACCGACGCCAATGAACAGCGCCAGCGCTTTGCCAATGACAACAATAAACGTATTGCTAAAGGTCTTGAGCCCGTAGCCTTGGATGAAAACCTACTAGCAGCACTGGATGCCGGCCTACCACAATGTGCCGGAGTCGCCCTCGGAGTGGATCGTCTCGTGATGATTGCCTGCGGCAAAAAGCATATTCGCGAAGTGCTCAGTTTCGACATCGAACGCGCCTAACCTCAAATTATT # Right flank : TAAATAAACCGAATTCCAGTACGGGTATAATCGCACACTAGAGACAATCCCTTTTCGCAATGGGTTGGCAACGATGTACCTGGCTATGTGAATGCGCTGCTCATCCTCACGCAAAGCGTGGTCATAAAACCCGCTTTGCCAAACTTTACCGCGACGCTGTAATTGACGATTAACCATGGCTGCGGTGCAACCTTTTAGGTGCCGTATACAAGCGCTAAGATCGCTATGGTGCAGTAACACAAGCCCATGGAAGTGGTCTGGCATTAAGACCCAGGTTAACCATTGGCAGCCGCAAGCCTGCTCATTAGTTGTAATCGTGGTGCAAAATAGCTGTGCTAGTTTCGCAGAGGCAAAAAATGGTGTGCGTTTGTAACAACAAAAAGTAATAAAATACTCGCGGTGAATTTGCGAATAACGTCCTTTTAATAAATCACTATAAGGCATATTCAGCTCCTTTGAATATGGTGGACATTTAATTATAGCTCGAGAGTTACAAGGTT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //