Array 1 18860-20351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000037.1 Nocardiopsis alborubida strain ATCC 23612 W7517_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18860 29 100.0 32 ............................. GGCACGCGGGTCCCGGCGGCTGCCAAGCCCGC 18921 29 100.0 32 ............................. AACCGGCCGCCGCCCCACCCAGAGAGGGCTCT 18982 29 100.0 32 ............................. AGCGCCAACGACGGCCTGGGTGGACAGTACGG 19043 29 100.0 32 ............................. CGCACGGATGCAGGATCAGAGGATTGTTGACC 19104 29 100.0 32 ............................. GCGCAGAACATGATGTCGGAGTTTCGGTTAAC 19165 29 100.0 31 ............................. GGCAAGCGCGCTTGGAGCCTGGACGACTTCC 19225 29 100.0 32 ............................. CCGAGGGCATCAACATCGACCACGCCGCCATG 19286 29 100.0 32 ............................. ACGGCCCCCGGGGACACCCCGGCGGCCGGTGA 19347 29 100.0 32 ............................. TTAGGTGACTAGCTTCTGAGGTTCTTAGGTGT 19408 29 100.0 32 ............................. CAGGCCGAATATGAGCGGATCTCGGGGGAGAT 19469 29 100.0 32 ............................. TTCGGCGGCCCCCGGGACTCCCCAGCCCTGAC 19530 29 100.0 32 ............................. CCCTGGAGGACCTGAACGACATCGAGGCGGCC 19591 29 100.0 32 ............................. CCACAGCACGACCAGGGCCAGGCCGAGGGGGA 19652 29 100.0 32 ............................. GCCCAGGCCCGCAAGAACGGCACCGACAAGAA 19713 29 100.0 33 ............................. TGGTCCCGCCTCCAGGTCAGATGGGCGGCTGCC 19775 29 100.0 32 ............................. CCCACACGCGGGCCCTGGAGGACGAGAACCAG 19836 29 100.0 32 ............................. GTGGAACAGGTGCAGGACGGTCTCGAACCGGC 19897 29 100.0 32 ............................. GCTCGGACGCTGCACGTCCACCAGGTGGCGGA 19958 29 100.0 32 ............................. CCGCCGAGGTCTACGAGGCCGCCCTAGGGGAG 20019 29 100.0 31 ............................. GTGCGCGCGGCGGTGCCGATGGCGCGGTCGG 20079 29 100.0 32 ............................. AGTCTGGCCGTGCGCCACCAGTACCACGAGCA 20140 29 100.0 32 ............................. ACCCCGAGACCGCCGACCTGTTCCTCACCGGC 20201 29 100.0 32 ............................. GTACTCATGGACGAGCGGCTAGGGCACACGGA 20262 29 100.0 32 ............................. GCCTGCCACTGGGCCGTGCTGACCCCCTCCGC 20323 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCTGGCGTATCTGCGGATCGCGGCGGCGGAGTACACGCACGAGCTGCTGTCCGAGGTGGAGTTGCCGTGGATCGAGGAGAAGCGCCAGGCCTACCGTCGAGCCGCTGCCGACTGCTTTGTCAGCCTCGCCAAGGCCAATGAGGGGCCGGAGCAGGGGCTGGTCTGGTTGGAGCGGGCGAGGGAGTCCGACGGCCTGAACGAGGCCGTCTACCAGGAGATCATGCGGACCCAGGCGGCTTTGGGGCGGTTGGACGCGGTCGAGCGTGCCTACCAAGAGCTCAGCGAGCGGCTCAAGGCCATGCGCGCTCGTCCCAGCGTCACCACGAGCAAGCTCTTCCAGGAGCTGCTCGGTCGTTGAGGTTTCGTTGGCTGGGATGCTGGTGGAGCTGGGCGCCGACTGTGTGAGTATGGACGCGGAACGGGCGTTGGAGAGATCTTAAGCAAGCTCTCCGCATAGATTGCGAGGAGATAACGGCCCGCGTTTTCGCAGGTCGTTAAGC # Right flank : CTAGGCATGGTGCCGGTTGTTGACCGAGCGTGTGGTGATGCCGAGCAGGTCGGCGATCTGGCTGCCGAGCAGGCTGTCCTCTTCTAACAGGGTGGCGGTGGTCACGCGGCGGTGTTGTTGCCCGGTGGCGTTCATAGCAGCCTCCCAGAACTACTCCTACCAGGAGCCCCGCTCGCCCTGAACCGAACAATCAAAGCTCAATCAGGGTCCGCCAACAGTTGTCGGGAAAAGAACCAAAGATCAGGGTGTATGACATTTGTCATGCGCCCTGTGTCCAACTGTGCGAAATTCAACTATTTGCATATTGACCGATTGGTGGTCAGTGTCTATATTATTTCTGTCTTCTTCTTTGGGTTGATAGCTGAGGGATTTTTTTACATTTCCCTCGGAGAGGCATGCAGTAAGGAAGAGATTCATCGCAGCTCTGACGGCTTCTGCGGTCACCTTGTCCACCCCAGACGTGGCAAACGCCCAGGAGGCGGTGGGTCCGTCAGAGCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 25234-26237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000037.1 Nocardiopsis alborubida strain ATCC 23612 W7517_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25234 29 100.0 32 ............................. CCGGAGCTGGTCCTGGACACCCGCCGCAAGCG 25295 29 100.0 32 ............................. AACCGGCCGCCGCCCCACCCAGAGAGGGCTCT 25356 29 100.0 32 ............................. GCCTATCGGGAACAGGCATGGCGCACCCACCC 25417 29 100.0 32 ............................. CCACAGGTCACCTCACAGGTCATGGTTTTCGC 25478 29 100.0 31 ............................. GAGTAGGAGGCCGCCGTGTCCTACCCCGCCC 25538 29 100.0 32 ............................. CGGGATCACGACCTTCGCCTTGTCGTTGGTCT 25599 29 100.0 32 ............................. GGGGACGAGGAGATCGGGTTCACCGCCCCCAT 25660 29 100.0 32 ............................. CAGACCCCTGCCGAGTCCCAGGCCCCTGCTCC 25721 29 100.0 32 ............................. AGCTTGGTCATGAACTCCCGGGCGGCGGCCTT 25782 29 100.0 32 ............................. GCCGGAGAGTGTTCCTCGAACAGAGAGAACAG 25843 29 100.0 32 ............................. TCGTCGTACTCCTCTCAGGGCGGCGAGTGTGT 25904 29 100.0 32 ............................. AAGTTCGCTCTCACCGCTCCGGTAGAGCGGGT 25965 29 100.0 32 ............................. GTGCGCACGGCCACGCCCGCGTACAGCGCGTC 26026 29 100.0 32 ............................. GCCGTGTGGGACATCTGGCAGCGCAACCAGTT 26087 29 100.0 32 ............................. GCGGTGTCCTGCGCTCGCGGCATGTCCACCAC 26148 29 100.0 32 ............................. GCGCACGGGGAGGTGGCCACAGAGATGTTGAG 26209 29 86.2 0 .........G......C...A....G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CAACCTGCCCGCGTTGCGCGCTCGTGCCTGGGTGTTCTTGGGCTGGTTGGGCCAGGGCACATTGCCCGACGCGATCCGGTATGTGCCGTATGAGGCGTTCAGTCATCCTCTGGATGTGATCGGGCTGCCATGACCAGCACGAACGTCACTGCACGCCGAGAATGAAACAGCCTTGGGCAGGAGGTTCGCGTTGACGTTCACATGGCTCTGCTCGGGCTGGGCTGCGCGCTCATCTGTTGGGGGCACCTGAAGTCATTGCGATAGGGGCTCTCAGAGGCAGAGGTCGATGTGGGTTGGGTCCTCGGCGGGAATGGGGAGATTGGGGGTCCGGTGGCCATCCTGGTGTGCTCCAGCGGTCATGAGAGCATGGTGTGAGGTGGAGTTGGCGTTGGGGCGGGGCTTTTCGCGGGGTTTTGGAGGGATGGCCGAGGCCAGCCATTCCTTGACTGGTTAGTAGGTCTCGCGGAGATAACGTCCCGCGTTGTCGCAGGTCATTAAGC # Right flank : GCCATCCCGTACTAGACCGAGGAGTACGTGCGCGCAACAGGTTCGGCGGGGAGGAAGATCCCTACTCCGCGATGGGAAGCACCGACGCCACTGGCGTGTAGGCATGTCCATCGCGCGTCGTACCCGTCTTGGGCCAGGACGCTGAGTACTCGGTGTAGCCCTCGCCCTCGCTCTCGCTCTCGCCAGCGCAGGGCTTCCACGTTCTCCACGAAGACGTACCTGCATTCCAGCTGGCGAATAGTGCTTCTGCCCGGGAGCGCTGTGCCGGAACGGCGGGCTGCATGATGCTGCCCGCCGTTCGCATCGTCAGCGGCCGATGCTGTCCAGCTCGATGACGTCCTTTTCTGAGAGCGAGAGGGCTGCACCGGCGATGTTCTCGCGCAGGTGCGCCACCTTGGAGGTGCCCGGGATGAGGAGGACGTTCTCCGAACGCTGCAACAGCCACGCGAGAGCGATGGCCATCGGCTTGGTGTCCAGCCGCGCGGCGACGTTCGACAGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 45219-46713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000037.1 Nocardiopsis alborubida strain ATCC 23612 W7517_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 45219 30 96.7 31 .............................A GCTACCAACTGTTTCTCTCGACCGCTGGATC 45280 30 96.7 31 .............................C GGCGCGTGCTCTGGAAGCTCAGCAAGGAGAA 45341 30 100.0 31 .............................. AGGGACCGAGGGAGGAGCGATCAAACCTAGG 45402 30 96.7 31 .............................A GGGGCGTCGTCGCCGTGTTCGCGGCGCTGTT 45463 30 96.7 31 .............................T CTGCCGCGCCGCCACCCGCGAGCAGGCGTGG 45524 30 96.7 31 .............................T GCGCGCTGGTGGTCGTTGAGCTCGCCAAAGA 45585 30 96.7 31 .............................C GGGGCGGGTCGGAGATGAGCAGGTCGGCGGA 45646 30 96.7 31 .............................T GCCGACACTCGGTGTCGGGGTTCCTGCCGGG 45707 30 96.7 31 .............................A ACACCGGCGCGAGCACCAGCGACCCCACCCG 45768 30 96.7 31 .............................T TCATGATCGTGGACCCGCCCGACAGCGCAGG 45829 30 100.0 31 .............................. CGACCTACAACGCGCCGAAGAGCACCGTCAG 45890 30 96.7 31 .............................A GCAGTCCCCTTCCCTGAATGCGGGTAGGTGA 45951 30 96.7 31 .............................C ACCACCGGACAGGTCCAGGCCCGCGATCAGC 46012 30 96.7 31 .............................C CGGTCTACCGGCCGAAGGGCAGAGGTAAGAG 46073 30 100.0 31 .............................. CCTGCGCGCCGCCCGCACCGCCGCCGGACTC 46134 30 100.0 31 .............................. CGATGACGAGCCGGTCGTACTCGGGGCCGGG 46195 30 100.0 31 .............................. ACTCGCGCACCTGCACACGGACCACCACCTC 46256 30 96.7 31 .............................A CGGCGAGGAGGAGGGCGCCGGCGAGGATGCC 46317 30 96.7 31 .............................C CTGTCCGCGTGCGCTCCGCGGTGGTCGCCGT 46378 30 93.3 32 ............................AC GCGGCGGTGACGTGCTGGGCTCCCCTTGTGCC 46440 30 96.7 31 .............................C GGCGGCGGTGTTGTCCGAGTGGCTCCAGACG 46501 30 96.7 31 .............................A GGCTGGACATCGACCAGCTCCGCTACGCCAA 46562 30 100.0 31 .............................. TCGGTCGCGTCGGCCGGGTAGCTCCACGACA 46623 30 100.0 31 .............................. CCTACCGTTCCAAGCGGCGCATCGCCGAGCT 46684 30 93.3 0 .........................C...A | ========== ====== ====== ====== ============================== ================================ ================== 25 30 97.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TTCTTCTGGCCTTCGGCGGGTGGATCGTCTGGGGCATCGGACAGGGATTCCAGAACGCCCATGAGCGTGCCCTTGCCCGCGAGCGGGAGGAGACCAAACGGCTCCAGTTGCGTCTGGAGTCGCAGGAACGGGCTCAGGAACGCGCCGACCGTGTCTACTTCGACACCGTGGACCGCCACACCGGCCCTCTTTCCCTCCCCGTTCCGGAGGCTGACCCCGGGAACGGGAAGAATGGTGGCTCCTGATCACACCCGTTCCGAACCCATGCGGTACCGCCCTGAGCTGTTCGAGGGATGTCTGGTTGGGACTGGCCCGTCCCTGGAACCGTAATTCCACAAATCAAAGTTCGGTGATGGATTATCGGCAGGGGAGTGCTGTGCTCCTACCGGTATTCTGCGGGCATGGTCTTCCTGGGGCTGAGCGCGCCGTCCGTTTTGTCTGTTTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : AGACCGGGCACCATGCGCGACATCAGCTGAGCGTCTGCGTCCCGATGACCGACAGCACCTGGAGCTTCTCGTAGCTCTCGGTGCCGGGGACGGCGGTGTAGACCATCAGCGAGTGCGCCTGCCCCGGGTCGACCAGCCGCTGGCAGGTCAGCTCCAGCGCGCCGACCTCGGGGTGGACGAAGTGCTTGACCTCGTGGGGACGTATCCCGATCTCGTGGTCGCTCCACACCCGCCGGAACTCCTCGCTGCGGGCCAGCAGCAGTTCGGCCAGGTGGGCGGCGGGGGACTCCGGGCCGCGGAGGGTGACGAGCTCACGCAGCCCCGCGGCGTACATCCGGGTCAGGAACGGGTGCTCCTCCGGCGCGTAGATCCGCCGGGATCCGGGATCGGTGAACCACCGGTACCCCGCGCTACGGGCAGGCCCCGTGTGCCGCGTCGTGTCCCCGGTCAGCGCGACCCCCATCGGGGACTGCCGCAGGGTCTCGCCGAGCTCGGTGACG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27109-27443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000028.1 Nocardiopsis alborubida strain ATCC 23612 W7517_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 27109 30 96.7 31 .............................T TCAACCCGCCCTTTGTTTCCCCTGTCCAGGC 27170 30 96.7 31 .............................G TACACGCGGCGGGGTTCACCAGCTGGTCCAT 27231 30 100.0 31 .............................. ACCCAAGCTCGGCGTCACCACCGGCACCGAC 27292 30 96.7 31 .............................A CCGGTAGCCCTTCGACCCGGAAGGAAGAGAG 27353 30 100.0 31 .............................. GGCCCTCGGGGGTGGACACATCAGGTGTTGG 27414 30 93.3 0 .........................C...G | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CGATCCCGACCGGGTCGAGGACGTGGAGGCCTCCCTGCGGGACTACGCGCGCCGCCAGCTCACGGTGGTGCTCACGCCGCGGTTGATGCAGTTGAGGCGAATGGTGATCGGCGAGGTCGCGCGGTTCCCGGAGCTGGCGCGGGTGCTGTACGAGTGCGGGCCGCAGAGGGCGATCGCCGGGCTCGCTGAGAGCTTCGCCCGGTTGGGGGAGAGGGGGCTGCTGGCGGTGGAGGATCCCCTGCGTGCGGCGTCCCACTTCAACTGGCTGGTGATGTCGGAGCCGGTGAACCGGGCGATGCTGCTGGGGGACGAGGCCATTCCGACGGAGGCGGAATTGTGCCAGCATGCGGAGGAGGGAGTGCGGGTGTTCCTCGCGGCGTATGGGGTTGACGGTCGTTAGGGGAGTTGTGGGGCGTTTGGGTTTTATGGGGTTGGTGTCTGCTTTTCAGGAAGTTGGAAAAACGGGCGCTTGCCACTGGTAAGTTCGCAGGTGGTTGACT # Right flank : GATCGCACCAGGGGCAGCTACCTCCCTCGTCACTCCAGGCCCGGCACACCCGGTCAGATCCGGTCAGACGAAGTACCGCGCCTGGAGGCGGAACAACTCGGCGTAGAGCCCATCGGCCCGGCTCAACGTGTCGTGGGTTCCGGTCTCCACGACCCGACCGCCGTCCAGGACCACGATGAGATCAGCCGCCCGGGCGGTCGTGAGGCGGTGCGTGACGAGGACGGTCACACCGCCCTCCTGGCGGCTCAGGTCGGCGTACTGCTGGAACAGCCGCTCCTCGGCCCGTGCGTCGAGGCTGGCGGTGGGCTCGTCCAGGATCCGCAGCAGCGGCGCCCGCCGCATCGCCGCCCGGGCGTTGGCGACCGTCTGCCACTGGCCGCCGGACAGTCCCTTGCCTTCCCACGACTTCCGTCCGAGCCGGGTGTCCAGGCCCTCGGGCAGCGAGGCGAGCAGCGCGTCGCCGCCGACCGTCCGCAGCGCCTCGATGACCCGCTCAGGGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32714-33368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000028.1 Nocardiopsis alborubida strain ATCC 23612 W7517_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 32714 30 96.7 31 .............................C CGGGCGGCAGGTTGGTCATGACCGTGCTCGT 32775 30 100.0 8 .............................. CACACACA Deletion [32813] 32813 30 100.0 8 .............................. CACACACA Deletion [32851] 32851 30 96.7 31 .............................C AGCAAAGCCGGTGGATCATCACCTCCACGGA 32912 30 96.7 31 .............................G TCGTCGATCGCGTTGCCCGTCGCCGGGGTCG 32973 30 100.0 31 .............................. AGAAGAACGTGCGCGTCGGCGTGGCCTTGCT 33034 30 96.7 31 .............................C GGGGCGCGAACACCGCCTACGCTGCTTTGTC 33095 30 96.7 31 .............................C AGCAAAGCCGGTGGATCATCACCTCCACGGA 33156 30 100.0 31 .............................. GACCCTGGGCGGTGAAGCGGCGGTCGATCCA 33217 30 96.7 31 .............................G CCAAGGGCGCCCGCTGCAACGGCGTGTACAT 33278 30 90.0 31 ...............A.....G.......C TGGTGGCGCTGCCGTCCGGCGAGGTGGTCGT 33339 30 96.7 0 ...................A.......... | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.2 27 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : TCGGCCACACGCCGTCCGAGGAGTTCGCCCATATGACCGAGAAGCAGCGCAGGGCCATGTTCCTCGCCGAAGAACTCCTGCCCGGTCTGCCGGACGACTTCGAGGCCCTCGTGGTCGAGCAGCGGCCCCGGAAGCTGACCCGTGACGGAACCGCTGTGGACGCCCACGACTCCACGCTGTTCGCCCGCCGTCGACGCTGAGAGAGACCAGCACGAGGCATCTTGATGGGGTCCGACGGTTCTGGAAGCGCCTTTGACGGGGCGTTTTCGGGACCTGTTGTCTGCGGGAGCTTCGGGACCGCGGTATCCCCTTCTGTTGGTTGGTGATGTCGGAACCGATGAGCCGGGTTATGTTGCTGTGGGACGAGGTGGTCTCGGGGCGTGTGGCCTGGTGGCGATTGAGGGGTTTTGTTGCTTATGGGGTTTTGGTGGTGCATGTCTGTTTTTCAGGAAGTTGGAAATTCGGCTGCTTGCCATTGGTAAGTTCGCAGGTCGTTGACT # Right flank : AGGTTTAGCTCTTTGTCGTTGATCCCGGCGTAGTGCTTTCCGTGCGCACGGGGCACACCCGGCACACATGCCACTTGGTTTACACGGACGGGCAAACCTCCTTGGCCGGATGAGGACAGGGCGAATCCCTCTGTTTCGCTGCGAAGACATGTCGGACACCTGTTCAATGGCCGCCATGAAGCACGAAGGGCGCCCTCAGCCCTGGAAGGACCGCCTCTCCGAGGCCGCTCGCCGCGCGTGGGCCAAGCACGACTTCGACTCCAACGCCTGGCTTCCCCTCTACCGTCACATGGCCGACAGCGCCGCCGTCGCCACCAGGCTCTGGGACGAGTGGCTCCCCGCGCAGGTCCGCGACCACGTCAGCCGCGCACTCCCCAAGGGCGAGGACGACGCCCGCACCCTAGCCGTCTGGCTCGCCGCCACCCACGACATCGGCAAGGCAACCCCCGCCTTCGCCTGCCAGGTCGAAGACCTCGCGGACGACATGCGCCGCGAGGGTC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43027-43788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000028.1 Nocardiopsis alborubida strain ATCC 23612 W7517_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 43027 30 96.7 31 .............................A GCGCGCCCGTCGAGGCGGGCCGCGCGGTCGT 43088 30 100.0 31 .............................. GCGCCCGCGGAACGGTTGTGTCCGCGGGCGC 43149 30 96.7 31 .............................C GACCCTGAGCTGGCCGGGGACGCCATTGACG 43210 30 100.0 31 .............................. ACGTGGCCAGCCGGAGCGCTGCGGGGATGCG 43271 30 100.0 31 .............................. GCCGCTGGCGTCTCCCATTTTTCTCCCAGGA 43332 30 96.7 31 .............................T CGCCGCCACGGTCGGCGACGCTTTCGGCGGG 43393 30 100.0 31 .............................. CTCGGAACCCAGCACCGCGGGCGGCCTTGAG 43454 30 100.0 31 .............................. GGGTGGCCTGCCTCGCGAGGAAGTCGAAGAA 43515 30 96.7 31 .............................A CGCCGTCGACCCCACCACGTGGGGCGTGGTG 43576 30 96.7 31 .............................T CGGCGTCGGCCTGGACCTGGTCGTCGTCCTC 43637 30 100.0 31 .............................. GTCACGCATCGCCGTCGCCCGCAGGACCGCC 43698 30 96.7 31 .............................T GGGGCGGCTACATCGCCTACCTGCACCCGCT 43759 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 13 30 98.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GGGGTGAGCTGCTGGAGTCGGGTTACAGCTACGCCGACGAGGTGGTCTGGTGACGGTCGTCGTGCTCACGAACTGTCCGGCCGGGCTGCGCGGGTTCCTGACCCGGTGGCTCATGGAGATATCGGCGGGGGTGTTCATCGGCAACCCGTCGCGCCGGATCCGGGAGGCGCTGTGGGCGGAGGTGAAGGAGTACGCGGGGAACGGGAGGGCGTTGCTGGCGTACAGCGACGACTCCGAGCAGGGGTTCACCTTCCAGACCTTCGAGCATCACTGGGAGCCGGTGGACCATGAGGGGCTCACCCTGATGCATCGCCCCAAGAAGGTGCAGGAGGAGAACAGAAGGCCTCCGAAGAGCGGGTGGAGCAAGGCGTCGAAGAGGCGGCGCTTTGGTGGGAGGTGAGTTGTTTTGGGTGCTTTGATGGATTGTGGTGCGGGTGTCCGTCTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : CGAGCGCGAACGGGCCGCCCATGGTCAGGTGATGGCGTCGATCGGTAACAGGAACGCTTGTTCCCGGGTTCGAGCAACACCATCAGCCTTCTCGTCACCGAAATGTCGATGAGGTTCAGCAACGGCGCCACGGGCGAGAGTGTTGGCGGCTTCGGAAATGTCAGTGGATCGGCCACCAACTTGTCAGTGAGCATCGGCCGCGGTCAGCGGGCACACGGTGAGCGTCACCGCCAACGCCGCGGGCAAGGGGCGCCAACGGTGCTGGCCCTGCCATGGCGTCTGGTCGAAGGCCGACGAGGGCCGTTTCAAGGCCGAGGGGTGCCGCGGCACCCGGCTTCGCCGGTCGGGCCCGCAGGTGTGACGCCGATCAGCGACGCACCATCCGGACCAGGGCGGCGGTGTCGTGTCGGCGGAACCAGGCCGCGACACAGACCAGGACCAGGGTGACCGCAGGGATGGCGACCAGGTCCGGGGTCACGATGGCGCTCAGGGCCGTCGCG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 50866-51688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000028.1 Nocardiopsis alborubida strain ATCC 23612 W7517_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 50866 30 100.0 31 .............................. AGTAGCTGGCCGGACGGCCGTCGATGATCCG 50927 30 93.3 31 ............................GC AGCGACACATACCCGGGATCCAAGCTTGGAT 50988 30 100.0 31 .............................. ACATCCCGTACGGGAAGTTGGACGCGGTGAT 51049 30 96.7 31 .............................T TCGTCCGAACCCTCTTCCGAAGTTCGGTTGG 51110 30 96.7 31 .............................C GCCGCCGGAGACACCGGTTGCCGGGTCATCA 51171 30 93.3 31 ............................TT GCGTGCCGAACAGGGCGACGCCGGCCTGCTC 51232 30 96.7 31 .............................C CCATGCGTCAGCTGGCCCGACAGGTGTCCAT 51293 30 100.0 31 .............................. CCCGCTCAGCCCCGCACTCGTGGCAGACCAT 51354 30 100.0 31 .............................. CCCGCTCAGCCCCGCACTCGTGGCAGACCAT 51415 30 100.0 31 .............................. CCCGCTCAGCCCCGCACTCGTGGCAGACCAG 51476 30 96.7 31 .............................T CCGAGTACACCCCCCAGAACGTCACCACCGA 51537 30 100.0 31 .............................. GGCGACCCCGCTTGGCCACGGTGCGTGCCAC 51598 30 96.7 31 .............................C GGACAAAGGTGCTGCGCTTCTGAATGTGGTG 51659 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== =============================== ================== 14 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CAGGATCAGTGACGCATCCTATCCCTGTGCCCCGGCCTTCCAGCGACCTGCTGCACCGACCGCTTCCGCCGCTGCCTCGTCGTCGCCCGCTGGTCGGCCCCTTCTGCCCGGCCTGCGAGCACCCTTCGTGCCGTCGGCGTCGGGCCGCGCGCCTGCCCCGCCTGGGCGGCCACCGCTCTGAGTTCACTCGCGAGCACGCCCGGGCCGCAGTTCTCCAGCGGCATCACCCGCACCTGCTCATCTGGTTCGGTGAGCAGACTCTGTCCTACTGGGTGGCCTCGCCTGTCGGACTGACTGAGGTTTCCGAATCCGAGGTGCTGTTGCTCCTCGCGGAGCCGGTTTCCGTGAACTGAGGGGTTACCGGCAGGGGCGTGATGCGCTCCTGCCGGTATTCTGCGGACATGGTCTTCCCAGGGCTGAGTGCGTCGTCCGTTTTGTCTGCTTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GGCCTCTAGGTTCGCTTCTAAGCCGTGTTTCAGGTAGCGGGTGAGTCCTGGACGGACAGTTCTATGGACAGTTCCATGCAGCGTTGGCGGGCCGGGGAGAAGTCGTAGGGCATCTTGCTGATGGCTTTGACCATGCTCATGGAGCCTGCCTCCCGCTTGGCGGGGATGAAGTTGCCCTCGTCATCGGTGGGAGGGGGGTGCAGAATGTCCCAGGCGTCGAAGAGGGCATCGTCGTCCTTATCCAGGCCGGACTCCTCGATGACGGCCTGCAGGGCGCTTTCGAAGGCGTGCCGCTCGGCGGCCACGTGAGCCACCCGTGGATCATCGACGGCGACACTGTCGTCGAGTGCCTCCTCGGCGTCATCGATGCGGTCGGAGCCCTCCCGCAGAGTGGGATGCGTGGCCAGGGCGATGAAGCGGGTGGCCTGGACTGCCGCGCCGAGCGGGCCGAAGATCCGCTCAGTGACCAGCAGAGTGTCCAGGTCCGCCTGCCGCAGGGA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 83745-84017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000028.1 Nocardiopsis alborubida strain ATCC 23612 W7517_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83745 29 100.0 32 ............................. CGGTACGGGGACTTCAGGCGGCGGGCTGTGGA 83806 29 100.0 32 ............................. AACAGCAGCGCAAACTCACAGCCGAACTCAAC 83867 29 100.0 32 ............................. GACTTCCCCGTCAGCTGGGAAAACACGCCCCA 83928 29 100.0 32 ............................. AACGCCCCGCCCCTCCCAGATGGGAGAGGCGG 83989 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CCCCGGGATGAGGGTCATCGGGGTAGGCCGACAGGTCGAGGGGGGCCTGTTCCTGGAACTCGCGGACGAGCTTGCCGATGTCGTGGCAGCCGGCCCAGAAAGCGACCAGCGCGCGGGCGTGGTGTTCGTCCGTGCCCAGGCCCGCAGCAATTCGGTGCTGCAACCCGCTGGAGAGCACGATGTCCCACAGGACGAGGGCGGCCGCGGTGGCGTCGAGGGCGTGGAGGACGTAGGGATACCGGTGACCGCGGAGGTGGCGTTCTTTGGCCCAGAGGCAGAGGTCGATGTGGGTCGAGTTCTCGGCAGGATCGGGAAGGTCGGGGGGATCAGCGGTCATCCTGGTGTGCTCCAGCGGTCATGAGAGCATGGTGTGACGTGAAGTTAGCGCCGGGGCAGGACTTTTCGCGGGGTTTTTGAGGGGATGGCCGAGATCGGCCATTTCTGAACTGGCCAGTAGGTCTCGCGGAGATAACGCCCCGCGTTGTTGCAGGTCATTAAGC # Right flank : GCCCACGCCGGAACGGCGACGGATGTCCAGCGTCAGTGGACTTGATCCGTCGGCAGGCAGTTGATCTGCTGCGTCAGTCGTTTTGCTCCCCAGGCCGGGCTTGCGCCAGTAGGGTTGCTCCACACTGACAGTGAGCGTTTGAAAGCGGTATGGATGCAGCCTGGGCATGGGGTGCAGGAGACCGGGGCGCCGGTGAGGTTCGAGGTCGTCTTCCTCGCCCCTGACGGCACCAAGGAACGTCTGCCTCTGGAGCAAGCGGCCCGATACCCCTTCGAGCGCGTGCCACCGGTCCGTTCCTTCCCGTCGTTCCGAGGCCAGCGCAACAACACGGGCTGGTGGTGGACCGCGACGACCGGCTCCCACGTGGGGTTCGAGTCATGGCTGGAACGGGACCTGCTGATCGGCTTCGACTTCGACCCGACCGTCACGGGCATCGCCTCCCAGCCCTTTTGGCTGCTGTGGCACGAGGACGGACGAGAACGCCGCCACGCGCCCGACTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 109796-110373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000012.1 Nocardiopsis alborubida strain ATCC 23612 W7517_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109796 29 100.0 32 ............................. ATCGGATCCCAGCCGCCCGCGTCAATGAGGCG 109857 29 96.6 32 ............................C CAGGGGCGCGGCCCTCGGGAGAGTGAGGGCCG 109918 29 100.0 32 ............................. GTCGACACGGAGTACACGACGCGCCTGGTGAC 109979 29 100.0 32 ............................. GGCGTTTTCCCGGATGGTGTCCGGTGGGCGGA 110040 29 100.0 32 ............................. GGTGCTACAGGGCGAGCGCGATGAGGAGAGCC 110101 29 96.6 32 .....................G....... TCCGGTTCCGGTTCACCGCCGCCGACGGATCA 110162 29 100.0 32 ............................. CACCCGGCGATCTCCCCCAACCCGCTGGCCCG 110223 29 100.0 32 ............................. GTCATCTATCACGTCGCCCGGGGCCTCGTCCG 110284 29 100.0 32 ............................. CGCGGGCCCGCCGCATCTCAGCGTTCCACCCC 110345 29 86.2 0 ..............G..........G.TT | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TTCGACCTCCAGGGCGTGCTCGGCCTGGTAGACGGCATCGGCCACCAGTTGGCGGGCGTGCTCGTTGGCCAGGCGGTAGTACATCCGGTTGCCCTCCCTGCGGAAGGCCACCACGCGTCCCATGCGGAGTTTGGCCAGGTGCTGGGAGACGGAGGGGCCGGGCTTGCCGAGGCGTTCGGCCAACTCGTTGACGGAGAGTTCGCCTCCGCGCAGGGCGAGGATGATGCGGACCCGCGTGGCGTCGGCCAGCAGGGAGAGGATCTCGACGGCGTACTCGACGTATGGGCTGTTCTCGTCGAGCCCGCATCTCTTACTACTTGCGTTCATACGCAGATAGTAGATCTTGAATGACGCGGAGGGCAACATCCGAAACGGTGTGTGGGGGGGATGGGCGTCGTCGTGCACTGTGTGAGGATGTATGTCGAGGCTGGGAGCGCTCAGCATGCCCCGAGCCAAGGTTGCGGCGAGATAACGGCCCGCGTTTTCGCAGGTTATTAAGC # Right flank : TGTTTTAGGAAACTCCCGCCTGGTGGGGCGCGGTCTCGGTACGCTCGCCGGGACGGTGGTGCCGAGACACAGGGGGCCTGTGGTGCGGGAGATCGAGACGAAGTACCGGGTAGCTGATCTCGAAGCACTGCTGGCCGCGCTCAAACAGGCCGGGGTGCGCATGAGCGACCCCGTCTACCAGGACGACCAGGCCTATGCCCCCGCTGGCTGGTGCTCGGAGCTGGGCCAGGTCGGCCACACCTTCGCTCGTCTGCGCACCCAGGACAGCGTGCACCTGCTTACCACCAAGACCCCATTGGCCAACGCCATGGAGTGCGTGGAGTACGAGACCATCGTCGCCGACCGTGAGCAGATGCACGGGGCCCTGCTGGCGCTGGGCTACGAACCCACGGTGCGCATTGTCAAGCACCGTCGCACCGGCACCACAGGACCCATCGGGGTGTGCGTGGACCTGGTCGAGGGCCTGGGCGCCTTCGTCGAACTGGAACTGGTGGTCGATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 283455-284459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000004.1 Nocardiopsis alborubida strain ATCC 23612 W7517_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283455 29 100.0 32 ............................. GGCGCGCCGCTGGTCCCGGACCCGCCTGACCG 283516 29 100.0 32 ............................. GAGGACCAGGGCGACGACTTCCCCCAGGAGCA 283577 29 100.0 32 ............................. ACGCCGGATCGTAGATACCTGGGTGCTTCCGC 283638 29 100.0 32 ............................. GGTGACCCCGCCGATCATCGGGGTTGCGCTCA 283699 29 100.0 32 ............................. GCCGTGTGTGGGCCGCGTGGGTCGCCGAGGTC 283760 29 100.0 32 ............................. TCAGCATCGTCGATCCGGACACGAGCGCGGCC 283821 29 100.0 32 ............................. GAGCGAGATCGCCTTTACCGCGCCGATCACCC 283882 29 100.0 32 ............................. GGTCGGTCAGGAGCTGACGGTAGAGGTCACGG 283943 29 100.0 32 ............................. GACCAGGTGGACGGCGGGACGCTGGTCGCGGA 284004 29 100.0 32 ............................. CCAGCCACACCCGAAGCCAGGTTGCCCAAGCT 284065 29 100.0 32 ............................. GACGACCCGACCGTGACCCTCCCCGAGGCTGA 284126 29 100.0 32 ............................. GGTGTCGAGCTGGGTGCGCTGACTACGTCCAT 284187 29 100.0 32 ............................. AGCCGCCCCTGCCCCCGGACCCGTTCAGCGGG 284248 29 100.0 32 ............................. ACCACCCCGAGGACCTCCGCCCCACCGTGCCC 284309 29 100.0 32 ............................. GGCAGCCTCCGCGCCATCGCTGTCCACCAGGA 284370 29 96.6 32 ............................T CGACATCCCCCGCACCACCTACGACCAGGTCC 284431 29 89.7 0 G...........T.T.............. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACGAGTACGTCGGGGACGATGACCCCGACGCCCTCAACAACGGATACGCCCTGGTCAACCACGACGCGTTCGCCGTGGCGGCCAGCGCCGTGCGGATGACCAACGGGATGGACCTGGACGGCGGCCCGCCCACCGCGGAGGAGGTGGCCTCCCAGCTGATGCTGCTCAACAGCGCCCACGAGGTCCGGGCGGGCGGCGGGGTCCTCGGCTACAGCGACGAGTACGGCGGGGAGGCGGTCGGCCGGTACGTGCCCGTGGTGGAGTTGCCGTTGGAGGGGGAGGAGCCCAGGGGCCACCCGCACGTCATCGGTGGTGTCGCAGGGGTGTGACTTCCTGGTTCCGGGCGGCTCGCTGATCGTGTGCCCGTTCGGCACGGTGAACGCGTGGGCCTGTGTGGAATCATCGGTTGGATCGGACTCGGCTTTGTGGGTGGAATGTCTGTTTCTCGGGAAGTTGGAAATTCGGCTGCTTGCCGCTGGTAAGTTCCCAGTTCAGCGAGT # Right flank : CGTGGAGATTTTCGACGGCCAGGCTGCGGTCGCCACAGGGTGGGCGGCAGACACGAACGGCTGAGAGCCAGCGCTACCCCGGTCCGGCACCGCGCAACCGGCGCTGTCCGAGACCGGCCGATTCCTATGGCAGGTAGTGGCAGGAGGGTTACCCTCTGTGTGACCTGTTCCCCTGTGTAAGGAGCGCCATGGCCAAGCATGAGGGCCAGCCCAAGCCCAGCAGGCCGTTCGAGCCCGAACCGCCTTCGCCGGACTCCCCGACACCTGGCGGCGGCACCCGTGAGAAGCCCAAGGGATGACGGGCCCCGCGTCCCTCGCGGACGACCTGAGCCGGTCGGGGTACCTGACCGACCGGCGCTGGCACGCCGCCTTGGCCGCCGTCCCCCGGGAGCTGTTCATCCCGGCCGCTGCGATGGCCGTGCCGGTGGACGGCTCACCCCCGTACTCGATCGACCGTGACGCCGCCCCCGACGCCTGGCGCACCGCCGTGTACACCGACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3286-4169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000058.1 Nocardiopsis alborubida strain ATCC 23612 W7517_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3286 29 79.3 32 A.....TGGA.A................. ACTGGCCGTAGGTCGGATCATAGAATGATCCG C [3289] 3348 29 100.0 32 ............................. CACTCGTCGGGTCGGTCTTGGATGAGCCCCGG 3409 29 100.0 32 ............................. GCCGCCTCGGGCGCGCGGCCACCGGCCCGACC 3470 29 100.0 32 ............................. GGTCTGGCCAAACTCCGCGAGCAGCTCACCGC 3531 29 96.6 32 ............................T GTGCGGTATTGATCCACAATTCCGCTTGTTCT 3592 29 100.0 32 ............................. CTCATGCCGCCGCACCCCCGGCCCGGCGCCGG 3653 29 100.0 32 ............................. ACCTCCGCCTGCCGCCCGGACAGACCGTCATC 3714 29 100.0 32 ............................. GCATGATCGACTCAGGCTTCGCGCGCATCACC 3775 29 100.0 32 ............................. AGATCGTGCGCACGGCCGCTGCCGTCTGACCC 3836 29 100.0 32 ............................. GCGCCGACGAGGAGGAACCGTCGGCGCCCGAA 3897 29 100.0 32 ............................. CGACCGGAAATCGTCGGTGTCAGCGTGCAATC 3958 29 96.6 32 .........T................... CCGCGGTCACCGACGTCCAGCAGACCTACGGT 4019 29 100.0 32 ............................. ACGGAGCCCGACCCGCGGTGCACCGTGGTGTG 4080 29 100.0 32 ............................. CCCGCATCCACGCTGGGGCGCAGCGCCGCAGG 4141 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CTGATGTACTACGCGGGTGCGCCGGTGGAGATCGCGCTGATCTTCCTGGTGTGCCGCCCCTGGATCCTGCCACGCAGGAAGGCCTCGAACGCCTCCAGGTTCGAGTCCGTGTAGGGCTCACAATATCCTGCAGTCGAATGTGAGCGGCATGCCCCAGCGGCGCGGCTTCCTGCTCGGCACCAGGGTGCTTCCGCAGATCCGCGCCGACCTGGGAACGCCGTAAGTGCGGACCCCGGCAAGGCGGAGAACGGTCGCCCGCCAGGGCTTAGGCGGTGGGCCCCGGCCAAGACAAGGGGAGAACGCCCAGGGCCTTGCGCAATGTCTCGTTGCGCAAGGGCCCTTTGATCGGGCTGGCTCCCGCGAGTAGAAGCGGCTCCTGTGAACGAGTCAGGTTCGGGCCAGGCGGTGAAAAAGAGCGGATCGGTTGGCGGACTCTCATCATGGCCGCGCCGGGATAGACGATCCGCTGCTGGTCAAAGACCTCTCTCAGATCAAGTCCA # Right flank : GCCGTCTGGTGTTCTCGCACCGGGCGGCTTCGCTGTCTTCGGTTGTCCTCCCAGTTCACCCCCTTTGCACGTGCATCACATGATCGTGTCCACAGCCCTGGAGGCCCTGTGCGGTTTCGTCCCCTCGTTTTTGTCGCCCTCGTCCTGGGCCTGACCGCCTGCTCGCAGACGCCCACCGCTCCCGCCGGGCCAACCCAGGCCCCCGTCACCGAGGCGGCCCCCGGGGACGAGGGGCGCATCCCGTTGCGGGTGGAGGCCATCACCGACAGTGGGTCACTCATGGACTCACACGAGGACGGGACCTGCGAGTGGATCGCCCCGTCCTATGTCCTACGGGACGGGGCCGGGACCGTGGTGGACGTCGGCGACCTGGTCGCCGACGGGAACGGCGGGGGCACCGTGGGGCAGGTGCGGGGGGAGATGTCCGACCGTGTGTGCGTGCTGTCCGCGACCCTGTCAGCCCCGCCAGCGGACGTCTATGACGTCGAGATCGTCGCCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 190969-189842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPG010000015.1 Nocardiopsis alborubida strain ATCC 23612 W7517_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 190968 30 100.0 31 .............................. GGTGGCACCCCCACTGGCACGTCCTGCTGTT 190907 30 100.0 31 .............................. TCGCCGTGCCAGAGGACCTCTTGTTGCACAG 190846 30 96.7 31 .............................A GCTCCTGGCACTCGTCGATGGCCAGCACGAT 190785 30 96.7 31 .............................C CTGACACCATCGTCAACGAACGATTGACGCG 190724 30 96.7 31 .............................C CGACCGGCCGGAGCGGCCGGACGGGGAGGAA 190663 30 100.0 31 .............................. ACCGGATCATGGTCCTGATCGCTGACATCGT 190602 30 96.7 31 .............................A CCCGCTTGACCTCCTTGCCCGAGGGGGCCGG 190541 30 96.7 31 .............................C GGTTTCGGGGCCGACTTCGCATCTGACCTGT 190480 30 100.0 31 .............................. AGTCGAACGAACTGATCTTCGCGATCGACTC 190419 30 96.7 31 .............................A ACAGCGACTCCACCATGATCACCAACGGCGG 190358 30 96.7 31 .............................T CGATCCACGCCGACTTGCGGTCGCGGGCGAT 190297 30 96.7 31 .............................C CGGTCCACAGCGCCGTGAGCGCGTGGAAGGA 190236 30 96.7 31 .............................A GCTCGAAGGGGGTCAAGTTGCCCTTGACCTT 190175 30 100.0 31 .............................. AGCGCCTTGGTAGTACAGGGGGCAGTACTAC 190114 30 96.7 31 .............................T GGGGCTTGGCTGGGTTCGCGGAGGGCGGGCG 190053 30 93.3 31 ............................TC CCAGCAGGACGGGGATGCCGATGCGTAGCGC 189992 30 96.7 31 ............T................. CGAAGTACGACCCCTGGAACGCCAGCTCCTG 189931 30 96.7 31 .............................T CACTTCGCCTGTGGTGATTGACACTGCATGC 189870 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 19 30 97.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCGCGACGTCGACCTCCACGTCCTGGTTCAGACGGGGGAACTCCGGTCGGTCCTCCACGACCGTCCACACACTCCTGTGCCGCATCTTTCGCCCTCCCGGTCGAGTCCACTGGTGCCGATGCCCTCATGGACCGGAGTCCGGGGCGCCCCCGTCAGCCCGGCGCCTCGACACGGGCGCCGTCGATCCCCATGGAACTGACAGTGCCTACACAAGTACCCAACGTTCCCGACCGTTACCGCCGGAGACCCGGGCAGGGCATGGCCCCAACGGTCCTGACTGGTGCGAGGGCTGTTTGGCGTGTGCCAGGGACTTTCCACAGGATTCGCGGAACGGGCGGCGAAGGGGGAGAGTGGGCCGTAGTTTGGAACTTTCTGGAGCGGCATCGTTTCGGTACTCGGTGGGTTATTTGAGCTTGTTGGGGTTTGTGGTGCTTTTGTCTGTTTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GAAAACCGCTCGACGGCTTCGCGACGCCCTGACACAGTGGCGCACCATGACGAGTTTCGAACTTGTGACCGCCGCGGACGTGCAGCTCATGCAGGGGCTGGCACAGCGCGTCACCGCCACCCGCCCGGACCTGGTGAACAGCGACGCGTCGTTCGGCGAGCTGGCCTGGAACTGGGGCAGGGGGCACGCCAGCGACGGCGCGACCTGGCCGCGTCGCCTGTGGTTCTCCGGCGGGGAACTGGTGGCGTGGGGCTGGGCCCGTCTTCCGCACCGGGTGAGGTTGAGCGACGGCTCCGTCAGGGACGTCACCAGCGCCTACCTGATGTACCAGGTCCACCCCGACCACGCCGGGCTGGTCGACGAGGTGATCGACTGGTACGACGCCACGGCGGCGGGCGTCGAACGCACGGTGGTGCCCAGCGCCGTCGACGAGTTCGGACTGGAGCGGTGGGCGGCGCACGGCTATGGGACCGACCCGGACTCGCTCGGCGACAACGGGT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //