Array 1 1015-1472 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPRZ01000484.1 Streptomyces sp. WAC08241 AA000258-482_WAC08241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1015 29 100.0 33 ............................. ACGGCCAGCTCGGTGGCGGTCTGCCTGTGTGCG 1077 29 100.0 32 ............................. GTGTTCGCGCGGCCGCGGACGATGCCGGACCC 1138 29 100.0 32 ............................. CGCACGAGCTCGGGGCCGTGCCCACCGACCCA 1199 29 96.6 32 ........A.................... CTCTACCTGGGCGAGCAATCCGAATGGCGGGC 1260 29 100.0 33 ............................. AAATCCGCGAATCCGGTGGAGAGGTCACGACCG 1322 29 96.6 32 .........A................... GCGTCGGACTCCACGAACAGGTCGCCGAGGGA 1383 29 96.6 32 ..............T.............. TTCCGCCGCGCCAAGCGGGTGCAGGCGACCGC 1444 29 93.1 0 .......................GC.... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.9 32 GAGCGACCCGCACGCGCGGGAGTCAACCG # Left flank : GTCCGCTACCGCATCGACGCTCAGCCCTACCGCTCCCTCCCCAGCCCCGTCGACGACCGCGACACCGAAGGCCGCCGCAAGCGCGGCACCAAGATCCACATCTTCGGCGACGACGCCATCACCTGGTGGCATCGCAAAGCCACACAAGCCGGCCTCACCACCACCAGCGGCGTCCTCGCCACCCAGCAGCCCGACGTCACCGGCTGGAAAGACGACCCCCGCGAAACCGGCAAGCGCATCCACATCTACGGCAAACGCACCCGCTTCGAAGGCACCGCCACCATCACCGACCCCGACGCACTGCGCACCGCGATCCTCCAAGGAGTAGGGCGTAACCGCGCCTACGGCGCCGGCCTCCTCTCCATCGCCCCCCTCAACCACACCTGACCTCCGACAACCCACGAAAGAAGGCACCGGCCAGAACCCGCTCTTCGTAGCCCCGACGTTCTACATTGGCAAAGAAAAAGCAAAGCCCACCCAACGCCGCAGGTCGCGAAGGG # Right flank : GGTCCAACCGGTGTGGTTGATGTCCTACCGCTACTTGGCCTGCATCTGCGGGAGTCGGCCGGCGGGGTACTCGGTGAGGTCAAGTATCCGAAGGCTGCCTGCCTACGCCGGAGTGCGGCGACAGTCGATCAACGTGCGAACCGGGCTCGCCTGCATGTGCGAACGCACTTGATGGCGTGCATGAGGAGTGAGATGTCTGACCGGGTTGGTGTATGGATCTGGGCCAAGTTCAGCAATTTGCCGTGGCCGTATCCGCTGATCTGCCACATGCTCGACACCGCTGCGATGGTCGGTGTGCTGTGGGACGAGTTCCTCGACGAAGGGCAGCGCCGGCAGATCGCCGACGGCTTCGGTACATCGGTCGACGAAGCCCGGGCCATGGCCATGTTTTGGGCTGGGCTGCACGACATCGGGAAGTGCTGTCCGCACTTCGTCGGCCAGCCCTCCGGGCCGAAGCCAGAGCTCCTTGACGAGCCCGAGTTCGCTGCGGCAGCCGGGTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCGACCCGCACGCGCGGGAGTCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 336-2967 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPRZ01000493.1 Streptomyces sp. WAC08241 AA000258-491_WAC08241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================== ================== 336 29 62.1 32 TC.........AGAT........CTTC.G CGGGACCAGATCCGCCAGTACGGCAACGCTGT 397 29 69.0 164 A..........C..T......TGC..AGA CGCCGACGATCTGGCCCGGCCCGTACGCCCCGCGCTTCCCGACCAACGGGGTGTACCGGCGTGGGCGGCCTGGCGCGCCTTGCCGGTGTACCGCTGGCGCAGTGTGTTCCTCGCCGAAGCGAGGGTCTTCCGGAGTTCTGGTGCCCGGTCGGCATGGAACGGGC 590 29 69.0 35 ..TA....G.....T.......AG.GGG. GCCTCTCGGTGCTGCGTGCCCGGGTGGCGGAGATG 654 29 86.2 32 ..............T.....TT..A.... CGCGCGGTCGCCAGGGCGGCGTAGACGCCGGC 715 29 96.6 32 ............G................ TTGTCCTGGGTCTCCTTCTTCGAGCCGGTACC 776 29 86.2 32 A..A........T.T.............. GTCCAGCTTCGCGCGACCGCTTTCCATCACCT 837 29 96.6 32 ............................T ACGCAGGTCACCAAGCAGGACGTGACGCGCGG 898 29 86.2 32 ...A......T...T..C........... CACATACGGATATCCGTATGCGACGGTCCCGG 959 28 72.4 32 A.........AT..-..AA..A......G TACGCCGGCCCGGCCGCCCACGGCCTCGATGT 1019 29 79.3 33 .......T.......A..A..A.....TT GCGGACTCGGCCGTACTGACCACCCAGGCCGAG 1081 29 75.9 32 .C.........TT....A...A..A...G CCGAGTGTGGTGCCGAGATGCCGGAGCATGAG 1142 29 86.2 32 ..T....T..T...............C.. TCCACGCTCCCCGACGCGGCGATCGAAGTCTC 1203 29 93.1 32 ..............T........C..... CCCCTCGACGCGGCCCCCCGACCGCCCTCGGT 1264 27 79.3 0 .......T...............CC.C-- - T [1281] Deletion [1291] 1292 29 86.2 32 ....................AA..T...G CCGAGCGGGCCGTCGACCACCTCACCGGCCGC 1353 29 96.6 32 .................A........... GGGCGGCCGTCCAGGAGGGAGCGGCCGATCGG 1414 29 100.0 32 ............................. TGCAGCCGGAATCCGACAGCCAGCCGGCCATC 1475 29 86.2 32 .................A.......TC.G CACGCCTGCGCCATCGCACTCCTGGACCACCC 1536 29 89.7 32 .......T.................TC.. GGTCCCACGCCTGGGCGGCGCTCCTCGCGCTC 1597 29 86.2 32 .........A...............TC.G GTGGCGGTCATCATCACGGCCACCGGCATGAT 1658 29 89.7 32 .................A.......TC.. CTCGCTCGCTTTGTAGCCCCACTGGTCGGCGC 1719 29 93.1 32 .........................TC.. CACGTCGCACAGATCGCCCCTGCTGGCTCCTG 1780 29 96.6 32 ..............T.............. CTGATGGTGATCCACCGGCTCTCCGACCTGCT 1841 29 89.7 32 ........T................TC.. GTGACGGTGACGGGGGTGCCCGGAAGCGCGCC 1902 29 89.7 32 ..............T..........TC.. GGGTCGCTGGACTCGGCGCATTTGGCGGTGTC 1963 29 86.2 32 .......T........T........TC.. TGGCCGAGGCGATGCAGCACCACCGCGTCCCG 2024 29 93.1 32 ..........T.................G GCCCAGATGCGGGCGCGGGCCTCCCGCTCGGA 2085 29 93.1 32 ..........T.................G GCCCAGATGCGGGCGCGGGCCTCCCGCTCGGA 2146 29 100.0 32 ............................. CCCGAGACCCTCACCGTCCTCGCCGCCGGGCC 2207 29 96.6 32 ............................A TTGGTCGTCTTGACCTCGTCCTTGGACATCTG 2268 29 86.2 32 ..T...........T..........TC.. GCGATGGCCCGGCGGCTCGGACTCCAGGGGCC 2329 29 89.7 32 .............T..T...........G CCTGCCGCTCAGACCGGAGGGACCCCCCGCTC C [2334] 2391 29 89.7 32 ...........A.T..............G GACCTGCTGCTCGAAGACCTCGCCAACCAGTC 2452 29 96.6 32 ..............G.............. ACCTTCCTGCTGGGGTTCTCCGGGCTTGGCTT 2513 29 82.8 32 ...........AT..A.........TC.. GTGCACGGCGGGATCATCGACGAGCTGCTCGT 2574 29 82.8 32 .......T....T....A......C...G ACGAACGCCGCACTCCCGGACGGGACGAAGGT 2635 29 89.7 32 .........................TC.G GTGTACGTGAGCGGGACGACGACGGCTTGGTT 2696 29 86.2 33 ..............T..........TC.G CAGGTCAAGGAGCGGTACGCCGCCCGACGGTAC 2758 29 89.7 32 .................A...A......G ACCTGGAGCGCCACGTAGGCGCGAAGGGGTAT 2819 29 89.7 29 ........T...T.T.............. CGGGAGAGGACACAGCCGGATACCGCGTC T [2837] 2878 29 93.1 32 ......................C.....G ACGTGGGGTCTGTACCGCCGTATGCGGCTGTG 2939 29 93.1 0 ..............T.............G | ========== ====== ====== ====== ============================= ==================================================================================================================================================================== ================== 42 29 87.6 35 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : CGACCACGCCTGCCCCCGCCCACTACCCCCCCCGCCACCCGACCACACACAGCTCGACCGCGACACCGTCGCCGCCCTCCTACGCCTCACCGTCACCTGCCCCGGCACCTACCTCCCCACCAGCGACCCGCACACCAAACCCCCCGCCGACTGGTCCCGCACCCCCATCGCACGAGACCTCCGCCTCCTCCCCCACCCCACCACCGCAGGCATACCGCAGCCGTATACCGCCGGCAGACACACCCTCCACCTCGACCCCGAACTCGGAATCGTCCGCACCCCTGTCACACCCCGCCATTAGACTCCGCTCCAGCCACCGCACCTTGACAAAAGAAT # Right flank : ACCGTCGCGGCAGTCGGCTCCCCGGCGCTCGCGTCG # Questionable array : NO Score: 4.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [59-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 4516-2909 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPRZ01000189.1 Streptomyces sp. WAC08241 AA000258-187_WAC08241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================== ================== 4515 28 82.1 33 .A.A..........CA.A.......... CCTCGACGTGTCCTCGGCATCCCCCATCACCCC 4454 28 85.7 32 .......T......C.........A.C. CTCGACCGGCTCGCCTGTGGGCTGACCGTTCA T [4428] 4393 28 89.3 33 ..............C...A.......C. TCCGCAGGCCTTGGTACCCGGAGCCGAGGCCGC 4332 28 89.3 22 .......T.........AA......... CCACATACGGATATCCGTATGT Deletion [4283] 4282 28 92.9 33 .A..G....................... GGCGGGCTTACTCCTCACCCTGGACGGTCTCCT 4221 27 92.9 34 ..............C..........-.. CGATCGGCGGGAAGCTCCGCCCGCCCCTGCTGCT 4160 28 100.0 33 ............................ CCTACGGAGGGACGGACGGGTCCTTGGTGGTTC 4099 28 85.7 56 T....G........C..A.......... GCTGCGCGAGGCCGAGCTCGCCGGATACGACGGGTCGCCTCCGTCCGCAGGGTTAC 4015 28 100.0 33 ............................ CTTTGTGATCGAGTGGGTCTACACCAAGGGCAT 3954 28 96.4 33 ..............C............. CTCGCCCGCCTCGCCCACGCCATCCACCTCGTC 3893 28 92.9 33 .............TC............. CCAGGACTCCGACATCGCACGGGCAATCATGGC 3832 28 100.0 33 ............................ GCCGCGGTGGTCGGCACGCTCCTCGGGTTGCCC 3771 28 89.3 33 .............TC....A........ GGCGTGGCTCATCTTGAGCGCGCCGACGCCCAG 3710 27 82.1 33 .............TC......-...TC. GGTCACGGCGGCGGAATTGCCCGCCGTGGTGCC 3650 28 92.9 33 ......A.......C............. GTTGGCTACTCTGACGGCATGACGAGCCGATCG 3589 28 100.0 33 ............................ GCGCCTGACGGTGGTGGCCACGTCGGTACCGGA 3528 28 85.7 33 ..T........A..C.....T....... GGAGACCGTGAGGAAACCCGCACGGCCGCACTT 3467 28 89.3 33 .......T......C.....T....... GGGCAACCACGTCACCCGCGTGGGCCAGGCCCT 3406 28 89.3 34 ..........T...CA............ CCTCGGCAGTAACAAGCGGCACCCGACCGTCGGC 3344 28 85.7 33 .....T........C..A......A... GCGATCGACCCTGTACGAGCTTATGGACACGGC 3283 27 85.7 33 ...........A.........-...TC. GAACGGGCTTGCGCAGGACGGCACCGAGGCGGT 3223 28 89.3 75 ..T...........C...........C. CAGCTTCTGTTCGCCGGCCACGAGCGACGCAGTGTTGTCCCCACGCCCCCCTCACCGACCCGGAACACCAGCCGG 3120 28 92.9 33 ..T...........C............. GGACCAGCGCACGGAGGCCGAACGCCTCTCGGA 3059 28 75.0 33 ...A..T.....G....AA.CA...... AAGCTCCGAGTCCCGGGGCGTCGGCCCCCGCTC 2998 28 85.7 33 ..............C..AA...C..... CGTGTTCTTCCACGTGTCCGCGATCTCTGCACC G [2973] 2936 28 89.3 0 .....T......T.C............. | ========== ====== ====== ====== ============================ =========================================================================== ================== 26 28 90.0 35 GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Left flank : GGCGCCGGATCCCGGCTCGCTTCCTGATCTGCGCGGCGTGCTACGAGCGGGGGTGTCCGGACCCGGACACGGGCCTGACCCGGGCGGCCTCCACTCGGCGAACCGAGTCCGCCGAGTGGTGGGCCCTGGCAGGCCGGGGCGCGGCCCTTCCACCTCAGGCGTGCGTCGCCGGATGCGGCCTGGTGGTGGTGCGCGGGGCGGAGGCGCTGATGCGGGGAGTGACCTGCTCGCGGGCCTGCCGGACATCCCTCACGCGCAAACGTAACGGGGGGCGCGGGTCGGGCCGTCCCTGCGGCGCCTGCGGCGAGACCGTTACGGCTGGGCGTGCAGATTCTGGGTACTGCGATGCCCGGTGCCGCCAGAAGGCCTACCGCCGACGGCAGACCGGCCAAGCGCGAGACCTGACCGACAGACCAAACAACCCGCACGGACAGCCGTAACGACACGGCCCAGTCGATTCATCAGGATCAGCGGGACGTCCGCCACCGTCACGGAGACCG # Right flank : CCACATACGGATATCCGTATGTGAAGACTCCGGGTCGTCCCCGCGCGGGGGTTACTCGAACCGGATCCGCTCCCGCATCGTCAGCGCCCGGTCGTCCCTGCGTCAGCGGGGGCTGCTCGTCGGCGTGGGCGCCTGCGTCCGTCACCCCCGATGGCCAGACTTACCTCGGTCCCCGAACTCGGAATCGTCCGAACCCCTCACACCCCGCCGTTAGACTCCACCCCAGCCACCGCATCTTGACAAGAGAATCCATCCCCGCAGATGCGGGGGTCTTCCGGTATCGAGCAGATCCTCGGCAACGTCGACACCGTCCTCCCCGCCGACGCGGGGGTGTACCGACCGACCTGATCGTCTTTCTCCGCGTCACCGTGTCCTCGCTACCGACGCAGGGGTGTTCCGATCGCCTGGTTTATCCGGCCCTGGAGCAGGATGTCTTCCCTGTCAGTGCGAGGGCGCTCCGTAGCTGAGGCCGCCGCGCGCGAGCTGGATCTCGTCCTCCC # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14034-5921 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPRZ01000189.1 Streptomyces sp. WAC08241 AA000258-187_WAC08241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 14033 29 79.3 32 TC.A.......A.AT.............. ATCTCGGCCAGCACGGCGAGGTCGCCGTTGAT 13972 29 86.2 32 .....T....T...T.............C AGCTACAGGTTCCGATCCGGCAGTGGGCCTGT 13911 29 96.6 32 ............................C TCCTTCGCGTCGCCCGTCAGGGCCGCGCCGAA 13850 29 100.0 32 ............................. ACCCACGCCTTCACCATGCCCCCCGCCCTCGT 13789 28 89.7 33 ...........C.............-..C CGTGCACGGTGGGATCATCGACGAGCTGCTCGT 13728 29 86.2 32 .......T....T....A..........C TCGAGTCGGCCTGCCTGGAACTGACCCGCCTC 13667 29 86.2 32 ...........A.TT.............T GCCTGAGCACCTACGGATTTTTCGGAGGTGGC 13606 29 100.0 33 ............................. CGGACGGCTGTTTCACTGAGTGAAACGCGCGAA 13544 29 86.2 32 .................A...AA.....C CGGCTCACCGTCCCGTACGAGCTGCCCGCCGG 13483 29 93.1 33 ..............T..........T... TCGATTCTCTTCCGCGGTGGCACGGGTTCCCCT 13421 29 93.1 32 ............T...............C TGCGGGACGACGCCGGATCGCAGGTACCTGGA 13360 29 96.6 51 .............T............... TCGACGGGGCAGCAGCGCCGCATCGAGCAGATCCTCGGCAACGTCGACACG 13280 29 72.4 32 ...C.......CGA.........GTTC.. ATCGTCTGGTTTATGCGGTCCTGGAGCAGTAT T [13271] 13218 28 58.6 33 ...T..T.T.TCAGT..A....C-....C CTAGCTGAGGCCGCCGCGCGCGAGCTGGATCTC 13157 29 58.6 33 ..TC...T.A.CGA.A......G..T.TC GACGGACAAGACACCTAGGAGGTCAGCGACTGG 13095 29 79.3 29 ..TT.......CT....A..........C CTCGCGGCCGCTGACGAGGAGGGCGAGGC 13037 28 86.2 33 ...........A..T..........-..C GAACGGGCTTGCGCAGGACGGCACCGAGGCGCT G [13016] 12975 29 86.2 32 ..TA.G......................C GGATGATCCGGGGCGAGTTCGTGGGCAACGTG 12914 29 93.1 32 ..A.........................C AGCTCGGCGCGGGCCTTCTTCCGCCCGGCACC 12853 29 96.6 32 .............T............... ACGTGGGGTCTGTACCGCCGTATGCGGCTGTG 12792 29 96.6 32 ..............T.............. ACCGTCGCGGCAGTCGGCTCCCCGGCGCTCGC 12731 29 86.2 32 ..........T..T.....A.......G. CCCGCTGGGATTTGGAGCGCGCCGAGCTGATG 12670 28 82.8 33 ACA......................-..C CCCGCGCCGCCTGGACCGGGCCTGAGCCGCGTA 12609 29 89.7 32 .......T...A................T CAAGGGAAGGTCGAGAGCAGGCCCGCCGTATC G [12587] 12547 28 89.7 32 ..............T........-.T... GCTGGCCTGATCGCCTTCCTCCGCCTCACCGC 12487 28 65.5 33 ...C....T..CGAA..A.....-.T..C AATCGTCTGGTTGATCCGGTTCTGGAGCGGGGT 12426 29 62.1 29 .G.T......TCAG........CGCTC.. TAGCGAAGGCTGCCGCGCGCGAGCTGCAT 12368 29 69.0 33 C........T.A..G...C..AG..T..C ATGGCCGTACGGTCACGCCAAGAACATGAGGTT T [12361] 12305 28 75.9 32 ...C.......TGA.......C.-....C TGGCCGAACGGACCGCCGGCCTGCAGCCCGAG 12245 28 72.4 32 ....C..TT...T.T.....T-..A.... ACGATCGCCCACGACAGGCGGAGTGCCTTCTC 12185 29 82.8 32 ....G............A.A...C....C CTGACAATGACTGGTGGTGGCAGCCTCGCCGG 12124 28 93.1 33 .........................-..C CGTGAAGCCGCTCCCGTACGACAGGAGCATCAC 12063 28 93.1 54 .........................-..C GCCCCACTCCTTGGGGTGCACGCGCATGGAGAAGTCGTCCCCGCGCCCGTGGGG 11981 29 93.1 32 .G.......A................... TTCTGGCACTTCGGAGGAGAGAAGCTCGTCTT 11920 29 96.6 33 ..............T.............. GCACCCGCCCTCGTGGCGCGCGGGAGGCACCGG 11858 29 86.2 31 ...............A........T.C.A GCTTCTGTTCGCCGGCCACGAGCGACGCAGT 11798 29 96.6 32 .............A............... GAAGTCCGCGTCGCGTCCGGCACCGCAGGCAC 11737 29 96.6 32 ............................C TTCTCCATGCCGCTCGGGTAGAGGCTCAGCAC 11676 29 93.1 32 .............A....A.......... TCGCCCTGTGTGTCCGGCGCGTGCGGGTCGAC 11615 28 89.7 33 ..............T..........-..C CTGCGTGACGCTGTCGACGGACGGTGTCCCGGT 11554 29 100.0 32 ............................. ACCGCCCGCGACGACCTCGCGTTCCTCGCCCA 11493 27 79.3 32 .....--.....T...T.......A...C GACGACACGGTGAACGCCAGCGCGATCCTGTC 11434 29 86.2 32 ..T.........T....A..........C CTCGGGCCGCTCACCGTGTACAGGCCGGACGG 11373 29 93.1 32 ..............T.............C GCGACCGACGACATCGACACCCAGGTGATCGA 11312 29 93.1 32 ..............A.............C TTCGGGTTGCTCGCGGCAGCCTCTTCCAGCTC 11251 29 86.2 32 ........T..T............A...C GTGAGGGTGGTCAGGGAGCTGCGGCGGAACTG 11190 28 89.7 23 ............T............-..C GAGGTCGGGCTCTAGTGATCAGG Deletion [11140] 11139 29 96.6 32 .............T............... TTCTGGCGCGGCGTGTTCACCGGGACCCTCAT 11078 29 93.1 32 ...................A........T CTGGCCGGCACGTACCAGTCGGCAGGGCAGTA 11017 28 89.7 33 ............T............-..C GCTGCCGCGCGTTGCGGCTGACCAGTACGGAGC 10956 28 89.7 33 ....................A....-..C CGCGATCACGAGCGGGGCGATCACGAGCGTCGT 10895 28 89.7 34 A........................-..C CGAGTCCCTGTCCGACGCGGCGGAGCAGCTGCGG 10833 29 96.6 32 ...................A......... AACTCGGTGGCCGCGTACGCGGCGTTCCAGCG 10772 29 93.1 32 .................A..........C TCGGAGGCCGGCCTGCAGTAGAGACGGCTGGA 10711 29 89.7 32 .C............T.............C CCGTAGTTGTCGTGCTCGGGCGTGATCAGACG 10650 28 82.8 32 .......T..........A..-....G.C CCTGGTCGGTCTCGGATTCTCAGACCCGTACC 10590 29 72.4 32 ..T..T....T.T..A....A.....C.C GGTGGACACGACATCCAGATCGCCATGGGCCA 10529 29 72.4 29 A.TC.T......T.T.......C.T.... TCCGGGCCCGGCCCCTCGGCCGCGCGCTT TT [10507] 10469 29 93.1 32 .................A..........C GCGGCGGCCATCTTCAGCACCCCGACGCCCAG 10408 29 89.7 32 .....T..............A.......C CTGCGGTAATCACCCCGGAGGGGGTACTGACC 10347 29 86.2 32 ....C.........T.....A.......C GCGCACGAGATCGAGCGGACGGTCGCCTCGGG 10286 29 82.8 31 .C...T.......T............C.T CCGGGCACGTGCCCGGAGGGCAAGGTGGGTG 10226 29 96.6 32 .......T..................... GGGGGCCGTCAGGGGGCGTTAGGACGGCCGAT 10165 29 96.6 32 ............................C CGCGCCGCCGACACCACCCAGCAGTAGCCCGC 10104 29 96.6 32 ......T...................... GCTGCGAGCTCGGCAGAGGCAGCGCCCGCGTT 10043 29 96.6 32 ............................A CTACGGACATGCAGGTCGGAGGGGGATCCGGC 9982 29 93.1 32 .................A.A......... GGCGACCACGTCACCCGCATGGGCCAGGCCCT 9921 29 89.7 32 .C.....T......T.............. ACGAGGCCGGTTGGCTGCGCGCGCAGATGGCT 9860 29 86.2 32 ................TA........G.C GGCACGATGTCGAGATCGATGCCGGACAGGCC 9799 29 86.2 32 ....G.......T.T.............C TGCTGCCGGGTGCTGAGGATGATGGCTCCGTC 9738 29 100.0 32 ............................. ACGACGCAGGCCTCGCCGGACGTGCTGAGCGC 9677 29 89.7 32 ......T......T..........A.... ACGGTGAGCAGGGCGCACCGTTCGGCGGTCAT 9616 28 89.7 40 .C..........T........-....... TGGGACGGCACCTGCACCATGCTCGACGCGTCGTCGTCCC 9548 29 82.8 32 CG........T...T.............A ATTGTGAGCGAACGGAACCGTCGCTACCTGCC 9487 28 79.3 30 ..........TCAG.........-....C GTAGCGAAGGCTGTCGCGCGCGAGCTGCAT 9429 29 72.4 33 C........T..T.G...T...G..T..C ATGGCCGTACGGTCACGCCGAGAACATGAGGTT T [9422] 9366 29 72.4 32 ...C....T..TGA.AT.........C.. GCCAAGATCGTCAGTGGGGAGCTGTCCCACGG 9305 29 89.7 32 .................A........C.C TGGGCATCGATACGGCCTCGTCCGAGGTGGAC 9244 29 96.6 32 ..........T.................. CCGCTCATGGTCAGGACGGACACCCAGACCGC 9183 29 86.2 32 T.........TA................C GCTTGGCGGCACCTGACCGCCGTCGCCCGCGC 9122 29 93.1 32 .................A.......T... TAGGGCACACCGTGGAAGATCATCCGGAGCAT 9061 29 93.1 32 .............T..............C AGGAAGGTCGTCGCGGTGACCGCGAGGGCGAC 9000 29 96.6 32 ............................C CGGCCTGCCCCAGCGCCGACTCCCCCGACCGT 8939 29 100.0 32 ............................. GGCATCGCCGCAGGTGAATACGCCTACGGCGC 8878 29 96.6 32 ............................C GTGGTCGTCGAGCCGGCCATGAAGCTGATGCG 8817 29 89.7 32 .C.A..........T.............. GACTTCACCTGCGAGGCCGTGGGCCTCGGGGG 8756 29 89.7 32 .C............T.............C CGCACGGACCTGAAGGGGCTGTGCGACTACCT 8695 29 89.7 32 .........A....T......A....... GCAGCAGGAGGGAGCACGGCCCCAAGAGCAGG 8634 29 89.7 32 ..............T.TA........... ACCGCTTGGGCGCCTCCGCCCGGCTCGATCAG 8573 29 89.7 32 .....A........T.............A GCCTTGCGCAGGGCGGCGCTGACGGCCTGGTG 8512 29 93.1 32 ..........T...T.............. CCGCGGGTGACCGGGGCGCTCGTGTGGTGCTC 8451 29 93.1 29 .................A..........A ACCACCGCCCCCAGCCTCACCTACCCGGC 8393 28 89.7 33 ...........T.............-..C GAGCGCGACCGCGAGGTGCTGACCGAGCCACAG 8332 29 93.1 32 T.............T.............. CGGCGCCCGCTGGTCGAGCAGGACCGCGACAT 8271 29 82.8 32 ..T....T.A..T...............C GGCACGTCGACGGACACTTCCGAGGGGCCGGG 8210 29 79.3 24 ......A......T........GG..GA. CTTGTCGACTATGGGGCCCGCGAC Deletion [8158] 8157 29 89.7 32 ....C...T.....T.............. CACTACCGCGTCGGCCCGTCCCGGGACTGGGG 8096 29 82.8 32 .....T......T....A..A.......C ATCTAGGTCAAGGTTCTCGGCCGGGCGGTCTC 8035 29 93.1 23 ..................A.A........ ACGAGGACGGACCGAGAGATCCT Deletion [7984] 7983 29 89.7 32 .............T......A.......C ACCCCCGGCGTCCAGCAGTACGCCGGCCTCGC 7922 29 96.6 32 ............................A GCCATGGTGGGAACCACGATCTGCCGGACCGC 7861 29 96.6 32 ..............T.............. GCACAGCTCGCCGGTGAGATGCGGGACCTGGT 7800 29 93.1 32 .................A..........C GCGGCGGCCATCTTCAGCGCCCCGACGCCCAG 7739 29 86.2 32 .....T.....T..............G.C GAGACGGTCAGCGCGGCCGGGCGGATGACGGG 7678 29 75.9 32 ....C.T....CT.T.....A.......C ATCTGAGCTGGCGAGATCGGCACCTACGAGGG 7617 29 86.2 32 .C.......T.C.....A........... GTGCCGTCACGGGTCTCCGGCGGCCCTTCGAC 7556 29 93.1 8 .....................A......C CACCGTGA Deletion [7520] 7519 29 89.7 32 ........T....T..............C CTGGCCGCATTCCTCACCGCCGGCCGCGCGCT 7458 29 96.6 32 .............T............... GCGTGCACCTTTACCTGTAACGCGGCTCCCAC 7397 29 93.1 32 ........T...................T CCGGCTTTCAGGACGTGCCGCTGCCGCTCGGA 7336 29 79.3 29 ............T....A.....CC.AG. TACAGCGGCGGCGCTCGCCGCGATCCCTT 7278 29 89.7 29 ......T.......T.............C TCCGGCATGGCCAGGCCGGGCGGATCGTC 7220 28 86.2 34 ...A................A....-..C TCGGAGTGTTCGGCAGGTGTGGGTCAGGCGGTCG 7158 29 100.0 32 ............................. TGCGTGCCATACTCCTGCACGATCGCGGGCAC 7097 29 100.0 32 ............................. GCGGGTATGCCCGACTGGTACATCAGCGTCCG G [7075] 7035 29 93.1 32 .....T.............C......... GCCGCGCGGAAGGACTACCCGTCGACCCTGAC 6974 29 86.2 32 .....T.T..T.................C TGGCCGAGCGCACCGGGGCCGAGTCCGTCACC 6913 29 93.1 32 .................A..........C ATGACGCTGAACCACTTCGCGGACGTCTCCTT 6852 28 89.7 32 ..............-..........G..C CACTGGGGGGCGTGAGCTCTCACGTCGGAGGC G [6831] 6791 29 96.6 32 ..........T.................. ACCTCCGCGCGGGAGCGCCGTGGCACCGTGGT 6730 28 86.2 33 ..........T.......A......-..C GCCGTTCAGGCGCAGCAGCCGGATGGCGTGTCC 6669 29 89.7 32 ........T........C..........C GCGCCAACCGTCGCCGAGCTGACCGCTGGCGC 6608 29 86.2 32 ......T..........A..T.......C GCCGCGCATGAGCGCGCCCAGCGGGTCTTCGC 6547 27 82.8 32 ..........T..--....A..C...... CCCGTGTCAGCCGTCCGGGTCGAGACCTGGAG 6488 28 82.8 32 .C.A.......A.T.......-....... GTCGAAGGAATCCTCCCGTTCCACGCCTACGT 6428 29 89.7 32 ............T....A...A....... ACCCACCTCGCCGCCTGCGCAGCCGTCTGGTT 6367 29 100.0 32 ............................. AGCGCCACGAGCACCGCGTACGGCATCAACCG 6306 29 82.8 32 ...........A.A.......A.C....C ACCGTCTACCACGTCGACAAGATCCCCGTGAC 6245 28 82.8 86 ..T...........T........C.-..C ACACTTGGCGGCCGGGAGGCTCGCGCGGGTGTCGTCGTCCGCAGGGGTTGTTCCTTCGAAGGCCGGCCGACGCCGTAGTAGTACAG 6131 29 82.8 32 A..A...T....T...............C ACCCTCGTCGTCACCAAGTCCCGTGCCCGCAT 6070 29 89.7 32 ..............T..A.......A... GCCCTGAACGCCCTGGAGGGCCTCAACCTCGC 6009 28 82.8 32 ........T...A.T..-..........C ACGGGCAGCGCCCGGTCGTCCTGTTCGTGCTC 5949 29 82.8 0 ............T.T........GTT... | ========== ====== ====== ====== ============================= ====================================================================================== ================== 133 29 88.2 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Left flank : CACCCCCATCGCACGAGACCTCCGCCTCCTCCCCCACCACCGCAGGCATACCGAAGCCCTACACCGCCAGCAGCCACACCCTCCACCTCGACCCCGAACTCGGAATCGTCCGCACCCCTGTCACACCCCGCCATTAGACTCCGCCCCAGCCACCGCACCTTGACAAAAGA # Right flank : GCCAGCCTGATCGCCTTCCTCCATCTCACCGCGTCCTCCCTGCCGAAGCAGGAGTGTTCGGATCGTCTGGTTGATCCGGTTCTGGAGCGGGATATCTTCCCCGTCAGCACGGGGGTGCTCCGTAGCGAAGGCCGCCGCGCGAGCTGCATCTCGTCCTCATCGCCGGCGCGGGGTGTTCCGTGGCCGTACGGCCACGCCAAGAACGTGAGGTTGTCCTCCCCGCTGACGTGGGGGCTGCTCCTGGCCGAACGGACCGTCGGCCTGCACCCTGAGGTCGCCCCCGCGTCCGCGGGGGTTGCTCGCGGTCGGCGGCGAGCGGGGCGGCCATCACGCAGTCGTCCCCGCGCCTGCGGGGGTTGCTCCTCGGGGGCGGCGCCGTCCGCGTCGACCCGGGTGTCGTCCCCGCGCCCGCGGGGGTTGCTCCCCGGGTACGGGCGAGCCTGCCCGACCGACCGAGTCGTCCCCGCGCCCGCGGGGGTTGTCCGATCAAGACCTACAGT # Questionable array : NO Score: 4.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [108-158] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //