Array 1 682933-685511 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018316.1 Dolichospermum compactum NIES-806 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 682933 37 100.0 36 ..................................... CACTCCCATTATGGCAATCCAAATAAAGCCATATAT 683006 37 100.0 35 ..................................... CCCACCGTATGGCGAGAAAATATCCCAGTCTTCTG 683078 37 100.0 38 ..................................... ATAGTGCAGAAGATATCAAAGAATCAAAGCAAAGACTA 683153 37 100.0 36 ..................................... GTAAATTTTCCAGAGGATAGATTAAAAATAGTTTTT 683226 37 100.0 32 ..................................... ATGATGGAAAATTATATTTGTATGGGAGTGAA 683295 37 100.0 35 ..................................... TCTGTCTCTGTATTAATGCACATAATAGATGGCGG 683367 37 100.0 35 ..................................... TTGATATTATAGTTGATTCTACCATAAGTTGTCAA 683439 37 100.0 35 ..................................... ACAACTTCAAAATCCTTTTAAAAGAGTGTGAGTCT 683511 37 100.0 34 ..................................... TTTTGCTTAAATTCTGGAGAATTTACGCTGTCGT 683582 37 100.0 44 ..................................... TTGGGATCTATTGAATAGTGGTAATGGTAATATTGATATTGAAT 683663 37 100.0 36 ..................................... TCATTCTACGCTGCATTTCAGCGCGTGGCGATTTAT 683736 37 100.0 36 ..................................... TAATGCGGTAATAAAAAGTGATAGCGTGTAATTAAT 683809 37 100.0 33 ..................................... CAAAGCATTAATAGTAATAGACATGAATATGGA 683879 37 100.0 36 ..................................... GAGATTATCTATTTCGATAGAGGGGATGATGGATAT 683952 37 100.0 40 ..................................... ATAGGAAACTCCTATTTTTAGAGGTATCCTACGTTTTCGA 684029 37 100.0 35 ..................................... CTGCAAAGCATTCTTGTAAATCCCCGAAGTGGCAA 684101 37 100.0 35 ..................................... ACAAGAAAGAATCAATGAGTTTATTAATAAATTAT 684173 37 100.0 36 ..................................... CTTTCGCTATTTGTCCATTCACAAGACAATGCCGAA 684246 37 100.0 32 ..................................... AAAAGCGTGAGACACTGCGGCTAATCGGGGCT 684315 37 100.0 34 ..................................... AGAGTCCGCCAGAGTAGGGAATTCTGTAATTAAT 684386 37 100.0 32 ..................................... TTAGTGAAAAAGTTCCAATCCCTCAGAAGTGT 684455 37 100.0 37 ..................................... TATACATTCAAAAGCACAAACCAGGGTTCATTGTTAT 684529 37 100.0 34 ..................................... TTAGTGAAAAAATAGAGATTCCTAAAAAAATCTA 684600 37 100.0 36 ..................................... CTTTTGCTATTTGACCATTACAAATGCAATGCCGAA 684673 37 100.0 34 ..................................... CTAATGTTCCCTGCTTGACCTGCCTTAGCTGCAT 684744 37 100.0 37 ..................................... AAAGATAGCGTATCAGGGAAAATGCTATTTGAATATT 684818 37 100.0 36 ..................................... GATTATCCTCCCCGGTAAGTGGGGAGGATTTTGTTA 684891 37 100.0 34 ..................................... TTGATTTTGTGGTGATTTTGTGGGTAGTGAAAAA 684962 37 100.0 38 ..................................... TTAAAAAAAGGACTTTCTATCTCAGAGATTCATAAAAT 685037 37 100.0 36 ..................................... TCAAGCTTACCTACGGGAAGTAGTTCTCACAGGAAA 685110 37 100.0 38 ..................................... ACCCAGGACTAGATCAGCCAAGCTAATATCATCTTCCG 685185 37 100.0 35 ..................................... CCTAGAGTATTGGTAAGCCAATCTGCCGTTTCTAA 685257 37 100.0 33 ..................................... AATCCTTTGTATTCGGAATGCCACGATGCTATT 685327 37 100.0 37 ..................................... GACCAGAGACACGATTTACCAAGCAGCCGGACAATTG 685401 37 100.0 37 ..................................... TAAGGATTAGTAGAACCACTCCCACCGCTCCCGTAGT 685475 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 36 37 100.0 36 GTTTCAGTCCCCTTGCGGGGATTATGCAAATTGAAAC # Left flank : TAGTAAGTTAGCTAGAACTTATACAAATCGTCATGGTTTAAAAGATGTGGTTTTAGAGTTGGAAAAGGTGGAATTAGACAAAAGTTCCCAATGTTCTGATTGGGGTAATGCTAGTAATTTATCTGATGCACAATTAAGTTATGCGGCTAATGATGTCCGTTATTTGTTAAGTGTACGAGAAAAGCTTACAACTATGTTAGAACGGGAAGAACGTTGGCAAGTTGCCCAAGAATGTTTTCAAGTTTTACCCACAATAGTTACTTTAGATTTATTACAATTCAAAGATTTATTTGAACATTGATAATATTGCTCATGGTTTCAATTTAAGCTATGGATTATTTGCTAGTTTCTACACCCGCCAAGAACTTAAGTTCCTGTCTAATAGCTAAAGTAAACTAAAGTTTACTAATGAATTTTTGGGTTATTTTAGTCATCTTTAGATGACTTTGGCTATTAGACTGGGAATTCATTCCCAGTCGGGCTTCAATGATCATGTTTGT # Right flank : CCCCGACCTCTGAAACCCAGTCTAAAAGCAGACTGTAGGGGGGATTTTGGCGGACCTCTTAAAAAACCTCATTTCAGGCTTTGGGTCAGATGCCAACCGAAACTAATGAAACGCTGAAAGTATTGAATTTTCAAGGTTCTGGCGATTTGGCGGATCCACAGGGTTTTTGACCCCGCTTTGGATTGCCAAAAAATCAAGCTCATGTGTTCATTATATGATGATAGCTTGTTCTTGTCTAGGTACTTCCGAACCATAGGTAATAGTTCTTTTCACACTACCAGAATCTAGTACATAAATCCTAATAGAATCCTGATCAGACTTAATCAGCTTTTCCATTTTAGTTTGTAATTGGGCAAATTGCACCGCATTCAAAAAACACTCAAACACACTGTATTGAGTCCACTTACCATAACCACTCAGCATCTTATGTAAACGGGTGCGGCGTTTATTTGCAGCTTTATTGTCAGGTAAATCGTAAATAATTAGATAAAAAAGTGTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCTTGCGGGGATTATGCAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,4.5 Confidence: LOW] # Array family : I-C [Matched known repeat from this family], // Array 2 1966772-1964244 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018316.1 Dolichospermum compactum NIES-806 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1966771 37 100.0 41 ..................................... TACATGAGAATCAGGATGCAACTTAGCGTTATGCTCATAAG 1966693 37 100.0 38 ..................................... AAACTTGGTAGATTACAAAGCACCTAACTATCGTAATG 1966618 37 100.0 35 ..................................... TGCTACTTAAAGCTCACTCTGAAACTTTTTTATTC 1966546 37 100.0 36 ..................................... CAAAGGCTGCATTGATGCAAACATGGGCGGATATGA 1966473 37 100.0 34 ..................................... AAACTCGTGTAATGCTGCTAAAAATTGATCATTC 1966402 37 100.0 36 ..................................... AACTTGAGACTTGGTATGAATAGCAATGTCTTCACT 1966329 37 100.0 35 ..................................... TATTTGGGTGGATTTTTCAGTAGTCATTCGATTTT 1966257 37 100.0 41 ..................................... ATCTCGCAGTTGGGTGCGATGCGGACAAAATACATAATGAT 1966179 37 100.0 37 ..................................... TGTTGCCAGATGGAACGACTCCTAGTTCAGCAGCAAT 1966105 37 100.0 35 ..................................... ATTGATACTGCTACCGTAACCATAATTGGATTAGC 1966033 37 100.0 46 ..................................... TTATCTTGCCTATGAGGGTGAAATAGGCGGACGTTTTGCTACTCCA 1965950 37 100.0 37 ..................................... AACAGACGCTTGCGCTTCTCTAGCCAAATACTCTCTA 1965876 37 100.0 34 ..................................... CAGTTTCTACAGATTCAGTTTCTACTGGTTCAAC 1965805 37 100.0 39 ..................................... AAGTTTGATTGAATCCAGAATTAGTCAAGTAGAACTTGC 1965729 37 100.0 36 ..................................... AGATCATGCAGCCAAACTGCACATAACTTTTATCAA 1965656 37 100.0 32 ..................................... ACATCCTGTCTGCCGGGAGGCAATAAATACAG 1965587 37 97.3 35 ...........................A......... TAAAGCATTGACCTTCTCTGATTCTGTCTGCAAGA 1965515 37 100.0 40 ..................................... TTTTCTTGTAATTGGGGATAAAAATTAGGATCTCCATCAA 1965438 37 100.0 36 ..................................... TCTCCCAGTAGATCACCATTCCCAATCTTGGGAATA 1965365 37 100.0 37 ..................................... TTCCAAGATTTCATAAACAGCAAACTTTCAGAAAAAA 1965291 37 100.0 35 ..................................... AGAGGCGGAAAAATGGTTATTTCTTGCAAAAAAAG 1965219 37 100.0 36 ..................................... TTATGTCAACGGATAAGTAAAATAAAATTTCCTGTA 1965146 37 100.0 34 ..................................... GAATGGGAGTTACCAGAAGATATGGCAGCGAGAG 1965075 37 100.0 39 ..................................... AGTTTGAGTCACTTGGCTCACTAGTCTATGGGAAGAGAT 1964999 37 100.0 38 ..................................... TAAAAAAGTTTTGACAACGGGCGATAGCAAGCCAGCAA 1964924 37 100.0 34 ..................................... TTGCGCAAATACCATATTGCCTATTTTTGGGCGG 1964853 37 100.0 35 ..................................... ACGAGTTTGGGAATTAGCTAAGATTTGTTCGTTGC 1964781 37 100.0 35 ..................................... GCCACTAAAAACCTGTTACACCATTATCTAAACAT 1964709 37 100.0 35 ..................................... AGAAAACCCGGAAACCCTTATCCCACAGGAATTAC 1964637 37 100.0 34 ..................................... TAATACCTCTTGCATCAAATCCAACTAATTGCCG 1964566 37 100.0 35 ..................................... AATGCAAAACGTTGAAACTGAAATTATTCTCACTA 1964494 37 100.0 33 ..................................... CTGGTTTGGTGGTATCTTTAATGGTTTATTTGG 1964424 37 100.0 36 ..................................... ATTGGCGATCAAAAAGGGAGTAATATTAATCTTAAA 1964351 37 100.0 34 ..................................... CCCAAGACAGATAACCAAGACATTAAAACTCGAA 1964280 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ============================================== ================== 35 37 99.8 36 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGCCGGACTAAAATCCATAGTATCCTCAAATCCTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCGATCGCGTCTCAATAAACTCATAAAACCTGAAACCGACAGCATTCGCTTTTACTTTCTTTGTGCTTGCTGTTTTGGTAAAATAGAAAGAATCGGTGGTGAACAGCCCCGTGATCAGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATTTCTACACAAGCTTTTCATGCAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATGAGAACATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCG # Right flank : TACGCATGAGGGTTTACGCCGTAAACCCCCACGAAATTTCAATTTCACTTAGAGAACTCCACAAAAAGATGAACTGCTTGCAGCAGCGCTAGTTCCCTGCGGGACGCTCCGCGAACGCTATCCAATTTTGTGGGATGGGCATCTTGCCCGTCCTTCTATTATTAGCGGGCAAGATGCCCGCACCACAAGAGATTTTGGGATATTTTTTTAATTGGAAGTCTCTTCCTCTTTTCCTCCCTATTAATGCTTTTTTAAGGAGTCTATAAGTCCCGTTTTGCCTCTTGTTACTAATCTTAAAAAAAATCGTAATAAGAATTTAACACCATCTGGCAATAGAAAGACTAAAATCAAGACGGACAGATTAGCCCTGTAATAAAGGAGCATTATAAAACAATGTCCGATTTAAATCGCGGAATCATGAAATTTGAAGGTGCAGATTCACCTAAACTGATTACAATCTCCACTGTGGTACTTTTAGGATCAATTGCTGGTCTGATTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 2053886-2051672 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018316.1 Dolichospermum compactum NIES-806 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 2053885 23 100.0 52 ....................... ACGCTATTAGACTGTTGTAGCTGTTTTCAGAAAGAAGTGTTTCAACTTACAT 2053810 23 100.0 52 ....................... ATATCCATTTGAATATTTACCTTGATTTCATAGTTCATGTTTCAACTTACAT 2053735 23 100.0 51 ....................... CGATCGCAAATCGCTCTTGTTCTTCTGCGGGCATATTGTTTCAACTTACAT 2053661 23 100.0 47 ....................... ATCACCAATTTCTCCCTAAGAGCGATCGCCAAAGTTTCAACTTACAT 2053591 23 100.0 51 ....................... TCCTACGTTTTTTGCACTCTATTTTTATCATTACAATGTTTCAACTTACAT 2053517 23 100.0 48 ....................... TCATTCTCAGATTTAACTAATCTCTGATTTTGAAGTTTCAACTTACAT 2053446 23 100.0 50 ....................... AATATCATTGATATCTACGTAAATATCATTGATATCGTTTCAACTTACAT 2053373 23 100.0 49 ....................... AGGCAATCAGTCAAGTATCGCTCACGGATAACTATGTTTCAACTTACAT 2053301 23 100.0 49 ....................... ACCAACTACTTCCCTAACTTCATGAATCAGTTCATGTTTCAACTTACAT 2053229 23 100.0 50 ....................... AGCATATCTGCTAACAAGTTAGGATATCTGCTCTTAGTTTCAACTTACAT 2053156 23 100.0 49 ....................... CCTTCCAGATAATTCCTTAATTTTATCTGGGTTATGTTTCAACTTACAT 2053084 23 100.0 51 ....................... CTTTTGCAATTTGTCCGTTTACAAGACAATGCTTTAGGTTTCAACTTACAT 2053010 23 100.0 50 ....................... GTCAAAAGATTAGCAATAAGAAGCGCAGTAAGTTGTGTTTCAACTTACAT 2052937 23 100.0 49 ....................... CTAACGAAACTATAGCTTTATAATCTAAGAAAAAAGTTTCAACTTACAT 2052865 23 100.0 51 ....................... TCCGACGTTTCCGACATTCAACTTTCAAAAATGCAATGTTTCAACTTACAT 2052791 23 100.0 51 ....................... ATTCCCAAAATCCTTATGTATATTAGATAAGCTTTGGGTTTCAACTTACAT 2052717 23 95.7 53 ..............A........ GTATTTTTGGCTTTTAAATACTAAATGATTTACTACAAGGTTTCAACTTACAT 2052641 23 100.0 48 ....................... TGTCCTTTGCCGATGTTCGCAAAGGTCAAATCGAGTTTCAACTTACAT 2052570 23 100.0 47 ....................... AAAATATCTCTTCCCATAGGTTAATAAATCAGGGTTTCAACTTACAT 2052500 23 100.0 50 ....................... CTATAATTGCTAATTTTGGGGATGCTCTTAGTCTGCGTTTCAACTTACAT 2052427 23 100.0 53 ....................... AAAATCACAAGACATATTCTGTTTGTGGGGGATATCAGCGTTTCAACTTACAT 2052351 23 100.0 52 ....................... TCTCGATCCGCCTCTTCTAGCGATGACAGCCAAGCGATGTTTCAACTTACAT 2052276 23 100.0 51 ....................... AAGCCAAAGGATAGCGCAATTAAAACAGTTAGCAAGAGTTTCAACTTACAT 2052202 23 100.0 47 ....................... AGTTTTCCGTCAAGCGCTCGCCAAGTTAACTAAGTTTCAACTTACAT 2052132 23 100.0 53 ....................... ACCTCGATCACTTTATCGCTTGGCTAGGGTCACTAGAAGGTTTCAACTTACAT 2052056 23 100.0 50 ....................... AATATTTTGGTAACTATTCCCACTACTTCCTATAGAGTTTCAACTTACAT 2051983 23 100.0 50 ....................... CGGCGATGACGAATCGGATTTGATAATTTTCGATTCGTTTCAACTTACAT 2051910 23 100.0 48 ....................... AAATAATACCCTTCTGATGGTTCTGATTTATTAGGTTTCAACTTACAT 2051839 23 100.0 48 ....................... TATATAGTGGTTAAGTAAATTTTTAATAGCTATGGTTTCAACTTACAT 2051768 23 100.0 51 ....................... CGGTTAGGAACTGAAATTCTGCCACTATCAATAGTGCGTTTCAATCTACAT 2051694 23 95.7 0 ..................A.... | ========== ====== ====== ====== ======================= ===================================================== ================== 31 23 99.7 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : GTTTTTTGTTACCTGCTGATGCTAGACCAGAAATTTTGTGTATTAGTGATACTGTCGCTGATAAGAATAAAACTGTTTTAGCTTATGGACAGACTTGGAACAATGGCGGTTTTAAGTGTGTTTCCCAAAAAACTGGTTTAACTTGTACTAATCAAAATGGCATTGGCTTTTTTCTCAGTCGGGAAAAATGGCGTGTTTTCGGACTTTCTCAACCTTAGTTAAGTTTTGTATGGCTGACTATTTTTTACCTAGACAGAAAAAAGCAATTATTATATGATGAACACATTAGCCCGATTTTTGGCAAACCTAAAGCGGGGTCAAAAACCCTGGGGGTCCGCCAAATCGCAAGAACCTTGATAATTAAATACTTTCAGCACTTCATCAGTTTGATTTGGCTGTTGACCCGAAGCCTGAAATGAGGTTTTAAATGAGGTCCGCCAAAATCCCGTCTATAGTCTGTTCTCAGACTATGTTTCAGAGGGCGGGGTTTCAACTTACAT # Right flank : TTGAAACAGCGATTAAAACCCGTCAGCCAGGGAATAAATTCCCTGTCTAAAAGCTAAAGTCGGTTAAAACCGACTATTTCAGCATACAAAGGATAATTTTTTATCTCGAATTAACTAGAGTGCGTTTTAACGCACTTTAGCTTTGAGACCGGAACTTAAGTTCCGGGCAGATTTGTTCAGCCAAACCAATGAAATATCGCCTACAATCACCTTTTATATAGGACTGACTACTTATTCAAATCCCATCGCCGCCGCCACAGCCTTAATATCAGCATCAATGCCCTGTTTGAATTGAGCATGACTGTGTTTAATAGCCGTATCTGGATCTTTCAAACCATTACCAGTTAAGACACAAACAACCGTTGCACCAGTGGGAACTTCGTCCTTTACCTGTAACAAACCAGCCACAGAAGCCGCACTAGCCGGTTCACAGAAAATCCCTTCTGATGATGCTAAAAGTCGGTAAGCATCGAGAATTTCCTCATCAGTCACAGACCGGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3596436-3595298 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018316.1 Dolichospermum compactum NIES-806 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 3596435 36 100.0 38 .................................... TCTTAAGAAATCAACTACTTTCTTAACAGCTTTTTGAG 3596361 36 100.0 35 .................................... GATCCGCAAAAGTTGTAGGTTGTGGTTTCTGCTTT 3596290 36 100.0 39 .................................... TAACCATCGTGTTTGTCTCCTGTTTTTTTTCTTTGTTTA 3596215 36 100.0 37 .................................... TTGGTTAACTTCTGCTGCGTTGTGTTGTGCAATGGCT 3596142 36 100.0 37 .................................... TTAAGGTTGTCATAATCTGTGTCTCCTGTTTTTTCTT 3596069 36 100.0 35 .................................... TATAACCTACTTCATGATGGGTTAATCAGACTTGA 3595998 36 100.0 37 .................................... CTAAAGTTAGCAGATAAGCCAAGATCATGAATCATGC 3595925 36 100.0 35 .................................... TCAGCAGGTATCTTGACTCATAAGCATGGCTTAAA 3595854 36 100.0 35 .................................... AGCAGTAGAAGGTTTAATGACTGAAGCTGGCTTTT 3595783 36 100.0 38 .................................... ATAACCTGACTTACATACTGAGAGAATTGTTTAGTCAT 3595709 36 100.0 40 .................................... TTTGCTGCTTCCTTGTAGTGGAATACTATGAGCATCCTGA 3595633 36 100.0 36 .................................... GTTTTAAGTTCTTTTATTCTATGTCACGGCTATTTT 3595561 36 100.0 45 .................................... TACCCCTCAAATATTAGAAATATTTAAGGAATATGAAGATGGTAT 3595480 36 100.0 38 .................................... AAGCACTTGTAGAAATGACACCACTAACCAGCATTACT 3595406 36 94.4 37 .........T.....................A.... ACTTTAATCCTGAAACAGATACCTATTTAGATTCAAT 3595333 36 94.4 0 .........................C....A..... | ========== ====== ====== ====== ==================================== ============================================= ================== 16 36 99.3 38 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : AAATTATGTTATGTTTTTGTATGTGATTGCTTATGATATTCCCTGTAATAAACGGCGCAAAAAAGTAGCTGATTTATTGGAGGGTTATGGACAGCGTGTACAATATTCTGTGTTTGAATGTCAATTGAGTACAGAAAAATATCAAGACCTACGTCGTCATTTGCGGAAAAAGCTGAAGTTAGAAAAAGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTCTATCTCAAGTGGAAACTTGGGGTGTGGGAATACCTGTGATTGAACCACCTAGTTCAATTATTATTTAGTTTGTTTTCAACAGCATAGTGTGGCGTTAGCCGTGGTTTAGGGAAAATGGCTGAGGTGTTGATTTTATGGTTGTGAACTTCGGTTGCTTATTGGATAAGGGTTACGCGGTTTTTAATGGTCGTTTTGTGGGCTGGTTGGCAGTGGTTTTTGCTGACCTTCGGAAAGTGGGTCTAGACTCTTTGCACAGTAAGGGGTTAAAATGAAGGG # Right flank : AGGGGAAGGAGGGGATGATCAGCAGTATATATAAATACATAATAGAGAATTTACTGATATTTTGAGAATCAGTAAATTTTAACTATCAATCAATGTTTGGTAAGGGAAACGCTGTAACTTGATAGCTGCATAAACAAGAACCCATGTCAAAGACAAAAAAATATTTGTAATAAAACTCTCAAAATGAGGAAAAGCTTACAGAGTAAGAGTTAGAGAAAACCGTACAAAAATCTTGAGATATTTTAGATTCCTAGACAAATACTGAATCCCGCTCTTATAATTCATTTATAAGCTACACAGGGAATCTACCGATGACAGCAGAATATTGGCGGGCTAAGATTTGGGGGTTATTACATGACCCTGTATTAAAAGCATTACATGACAATACAGGACGGGGTAAAAATAGCTTCTATAAACAACTAGAAGTAATGAAACCTTGGGTTGAAATTGGCAAAACCCCGGATGATTCTCGTGGTAAAGCATTAGCAAATATCCTCTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 3844408-3842595 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018316.1 Dolichospermum compactum NIES-806 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================== ================== 3844407 36 100.0 38 .................................... AGTTAAGCTTGGGGGCTTCTCCCTACCTCTCCAGGAGC 3844333 36 100.0 35 .................................... GTAGACCTCGAAATATCGTCCGGGGTTGCCGTCAA 3844262 36 100.0 44 .................................... AGCCCAATATTGGGTCTCAAGATTCATCCTTTTCTCAGTCTCGT 3844182 36 100.0 43 .................................... TTCGTAGGTCTCAACTTCAACTTCGTGTCCTTTGAATTTTAAA 3844103 36 100.0 31 .................................... GAGTATCTTTTTGTTTCATCCCAGCTATCTA 3844036 36 100.0 46 .................................... TCATCCTGCCAAGGAAAACTGGTGACAACAGTGTGCTCGTAGCACA 3843954 36 100.0 35 .................................... TAGCCTCAAAGACCAGCGACATTCCTAGTTGAACA 3843883 36 100.0 44 .................................... GCAGCAAGCTGGTCAGACCTTCTGTCAGCAGCAGTACGGACTGC 3843803 36 100.0 36 .................................... AATGTGTTTAACACATTCTTGAGAAACTGTATTCAG 3843731 36 100.0 42 .................................... AGAAGTTTAGCAATTTACCAATATTCATTAGGAGTTGGTGGT 3843653 36 100.0 43 .................................... TGGATATCTTCCACTTGTATTTCCATGTAATCTAGTAACTCAG 3843574 36 100.0 46 .................................... CTCTATTACAAGCTTAACCTTGCGGTTACTAAGGGTACCTAGGGTA 3843492 36 100.0 37 .................................... CCTTGGATCTGGACTTTTAATTGGAACTCTCCGGGAA 3843419 36 100.0 39 .................................... CTGTACTCTACGGGTATACAGCTAATCACAAATGGTTTA 3843344 36 100.0 38 .................................... GCTACCCCAAGACCGGGCTGCTTGGTAAGTTTTGCTGT 3843270 36 100.0 36 .................................... TGAGTTACTATCTCAAACCCTTGACCATTTATTGAT 3843198 36 100.0 45 .................................... ATACACTTCTCCTGTACTTGAGACAGTGGATAGCTGCAAGTCAAT 3843117 36 100.0 53 .................................... TTGAAAAAACAGAAGAGCTTGCTTGGTGGTGATATGTGACCAACCCCTAAAAA 3843028 36 100.0 72 .................................... TTAATCTGATGTACAGCGACAGGGGCGGGGCAATTTTGCGAAAATTTGCTTTTGATAAAGCCTTTGCAGGAC 3842920 36 100.0 36 .................................... TACTAACCTTATCCTTGGTAGCTTGGACGGCACCAA 3842848 36 100.0 37 .................................... GACCAATTGGTTTACTCTATCTATCTAGTAAGAACTC 3842775 36 100.0 39 .................................... CATCTCGTTGTAGGCAAGCAGGGTGCCGTCCTTTGTTTT 3842700 36 100.0 34 .................................... TACAGGAGCGGTAAATTCCTGTCCTTCCCAAGTT 3842630 36 80.6 0 ..........................C..GAT.TGA | ========== ====== ====== ====== ==================================== ======================================================================== ================== 24 36 99.2 41 ATCGCTTCTTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : CATAGTTTAGTTGGGATTCGGTATTAATTGTACTTTTTTAAGTTAAATCACACAGAAATAGGACTTACGCAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTTATACAAGTGATTTCATGCGAATGACGAATTTATTTATTGGTGATGATTTGTTGGCGGCGGGGTCAGGTCAATGGCGGAAATGCTGATGTTTCCGTTTACCCGGCCGATGTCTTTCTGTATAAGGGTTTCAGGGGTTTTGATTGCTTGTTTATTTTCTAAAAGCAGCCCCTAATTGATACCCCGTCGCAAATGGCATCTAGACATTAGGCACTGTATGGGTTTATAATGACGGGT # Right flank : GATCCCCGACTTCTTAAAGAAGTCGGGGATTTTTGGGTTTAGGATATTTTAAATTTCCTCATTCGCATGAAAAGTATTGAATAATCACAAAATTGAGATTATGTTGTTACACGAGATGTAAATAACATAACCAGATTGGTGAGGGAAATTCTACAATGTCAGAACAAAATAAAGATCAAGAAATTTTACGTCAATATCTTGATTCAATTAAGGGAGAAGAAGAACGTAAAAAATTACAATATTTAGCACGCCTTTCTAGATTAAATATAGGGATTGCTGTTTTCCTTTCTCTGCTCATTCCCATTGGTGGATATTGTTACACCCGACGGTGGAAAGCAGTTCTATGGCTTATGTGTGGTGGGGCTTTAATAGGGATGGTAATTGGTGGAACTGCTCGTAATAATAAAGAAGCTATGGCACGAGCTTTTGGTATAGGATCAGTTGCGGGGACAATTATTGCTCCTATTGATAATGCTTTGGCTATTTCTCGTGCGAAAAAA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTTCTTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 3879381-3880569 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018316.1 Dolichospermum compactum NIES-806 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 3879381 36 100.0 39 .................................... ACCAGCTTAATGGCTTGCTAGACAAGAGTTCTACGAATT 3879456 36 100.0 55 .................................... TCGAATGGTTATTAAACCTATAAAGTTTTGCTTTATAGACACCAGTAGTGTTTAC 3879547 36 100.0 45 .................................... TTTTATAACCTTATATAAAGATAGGGGACTGGTTTAAAGTTTTGA 3879628 36 100.0 36 .................................... CATCTAAAACTTGTTCAGCTTGACCTTCCCTAAAAT 3879700 36 100.0 37 .................................... CTCTTTTCTGCTGTGTGTCTGCGTCATCTGTTCTACC 3879773 36 100.0 41 .................................... TTTCTTGGACAACCAGGAAACTATCACTATTGCCAAAAAAA 3879850 36 100.0 35 .................................... CAGACTTTTCTGGTTCAGACTTTTCTGGTTCAGAC 3879921 36 100.0 38 .................................... GAACTCTGTGGCTTAACAAGTAGCAGATTTGCAATACC 3879995 36 100.0 39 .................................... AGGAAAACTTAGAAGCTACGGTTAAGTCTCTTGAGCAAG 3880070 36 100.0 44 .................................... TTGTTGCCGACTAATTGCCATTCTGGCTTTTCCAGGGGCTTGAG 3880150 36 100.0 38 .................................... GGATTGATAATTGTTTATATTCCATTTGTCTCTCAATA 3880224 36 100.0 40 .................................... GTTAGCATTTTTTTTGGTCGCTTGTGTTTTATGTTTTAAC 3880300 36 100.0 40 .................................... TCCCATACCAATACAATTCCAGAGAGATACACATTCCATG 3880376 36 100.0 44 .................................... ATTTGCCCTACGACAAATTCAAACTCAATAGCTTCTTTGTTGTT 3880456 36 100.0 42 .................................... TTTCTGTTATGGCAGTTAAAGATAACTGCATTTGACTACCTA 3880534 36 97.2 0 .....................C.............. | ========== ====== ====== ====== ==================================== ======================================================= ================== 16 36 99.8 41 ATCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : ACACCCAAGGCATTTAATAAAAGCCTCTTAGCGGTTAGATTCAAGCTTTCGCCCCCTTCTAGATGTTCTTGCAGTAATTTTAATTCATCATTTGTTAACCGAAAAGAGATAGGAACATTGTTAGTAATAGTCATAACGTCTACAGTTGTTTACTTAATGGCTACATATTAGTATAGCAGCTTGTTTACGACTTGTCTACAAGTATAGACAAGTTGTGAGTAAATTAAATGTTTACGCTGTCTACAAAATCTACACAACTTATCATATTAAATACGTAGACAACTGTAAACAGAGTGTAGACAAAACAAAATAAGGTAAAAATACGAAGGTCAAGGAAAATGGCTGAGGTGTTGATTTTATGGTTGTGAACTTCGGTTGCTTACTGGACAAGGGTTACGCGGTTTTTAATAGTCGTTTTGTGGGCTGGTTGGCGGTGGTTTTTGCTGACCTTCGGAAAGTGGTTCTAGACTCCTTGCACAGTAAGGGGTTAAAATCTAACT # Right flank : CTTTCAGAATTGTCTGAGAATATAGGGAATTTGGAGACTATATTAGGACTTACGCAAGTGTCACACTAAAAATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 4732241-4735121 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018316.1 Dolichospermum compactum NIES-806 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 4732241 23 100.0 50 ....................... ATCTTCACTAAAACGGGGTTTTCCTGAAATAATGTAGTTTCCGTATATCT 4732314 23 100.0 48 ....................... TTTCCTTTATCTAAAGGGTGACTCAGGAAGCGGTGTTTCCGTATATCT 4732385 23 100.0 54 ....................... ACTTGTACTATATTAAAAACAGAAAAAAGCAACCCGCCAAGTTTCCGTATATCT 4732462 23 100.0 51 ....................... CAAAAACTATGGAGAAACTCAACAGCATCGCTTGTTAGTTTCCGTATATCT 4732536 23 100.0 53 ....................... AACTTTACTATAATACTAGGTAGTCAATGCGTTGCGTAAGTTTCCGTATATCT 4732612 23 100.0 53 ....................... ATTCTTCATCTTTAATATTTTCAATTTCAGACTCTTTAAGTTTCCGTATATCT 4732688 23 100.0 48 ....................... ACAAATTCTTGCGCTAATTCTTGACGGGCATGAGGTTTCCGTATATCT 4732759 23 100.0 49 ....................... AAGTTTCTGCAATTATTTTTAACATTGCTTCTGTCGTTTCCGTATATCT 4732831 23 100.0 51 ....................... TTGGTGAGATTGTCTCAAGATATCATCAAAATAAACCGTTTCCGTATATCT 4732905 23 100.0 50 ....................... TTATCCCGAATCATCGATGATTCGGGGCAAAATACAGTTTCCGTATATCT 4732978 23 100.0 47 ....................... CTCTCTATGAAGCTTACTATGTATGCTTATACTGTTTCCGTATATCT 4733048 23 100.0 54 ....................... ATCACCAATTTCTCCCTAAGCGATCGCCAATTTCTCCCTAGTTTCCGTATATCT 4733125 23 100.0 47 ....................... ATAAAAATAATGATAAAATGGAATTAGTCCTAAGTTTCCGTATATCT 4733195 23 100.0 53 ....................... TATAAACCGTTTTGATTCTAACATTAATTTTAATCTATCGTTTCCGTATATCT 4733271 23 100.0 51 ....................... ATTCCTCCTTTGCTGAGGGGACTAGTGACACTCGGAAGTTTCCGTATATCT 4733345 23 100.0 50 ....................... GAAAACTCTGTCAGACTGGGTGACTCTCGCAACTAAGTTTCCGTATATCT 4733418 23 100.0 48 ....................... TTTTCCCAATCGTCATCCTCCTCATGATCATCGCGTTTCCGTATATCT 4733489 23 100.0 51 ....................... GCTTTTTGCGGCTCTTGGGATTGCTCCAAATTATCAAGTTTCCGTATATCT 4733563 23 100.0 49 ....................... TAACCACCACCCAATTTCACCATATTTAGTTTTAGGTTTCCGTATATCT 4733635 23 100.0 49 ....................... AATCACTCTTCTTTTTGCAGTATTCTACGGCTGCTGTTTCCGTATATCT 4733707 23 100.0 51 ....................... AATACTCCTAACCAATTAAGAGCCTATCCATTACAACGTTTCCGTATATCT 4733781 23 100.0 51 ....................... TTTTGTTTATTGAATAGGAGACAAATAAATGATCAGGGTTTCCGTATATCT 4733855 23 100.0 50 ....................... AAATATCGTTTGTTTTTGTTTTTGGATATTTTACAAGTTTCCGTATATCT 4733928 23 100.0 50 ....................... TAATCGCTTTATTAGGTGTTTTTGGTTTATTTTCAAGTTTCCGTATATCT 4734001 23 100.0 52 ....................... TTCCAAAATATTCAGTTCATGCAAGACATCCAGCCTAGGTTTCCGTATATCT 4734076 23 100.0 48 ....................... AGCACCTAATCTCACCCGTGCTGTTACGTTTTGAGTTTCCGTATATCT 4734147 23 100.0 50 ....................... TGCCTAGAACAAAATCAAAGCTTGAGACAGCCACAGGTTTCCGTATATCT 4734220 23 100.0 54 ....................... GTTACAATCACCCTATTTACTAATATTAATTAGGAGTAAAGTTTCCGTATATCT 4734297 23 100.0 49 ....................... TTCTCTTAAAAAATCTATTTCTACGCTCTCTCTCGGTTTCCGTATATCT 4734369 23 100.0 50 ....................... GATTGTCTACTTGCTTGATGATTGATAATAACAGGAGTTTCCGTATATCT 4734442 23 100.0 49 ....................... CTGACTCAGAAGCCCCTACAAACTGCAATGGTTTAGTTTCCGTATATCT 4734514 23 100.0 47 ....................... ACATCTCAAGTATTCTTGCAAGTTCGTTCTGTGGTTTCCGTATATCT 4734584 23 100.0 48 ....................... TTTTTCTGTAATACTTACACCACTCTCACAAGAGGTTTCCGTATATCT 4734655 23 100.0 50 ....................... CTTGGTTATGCCTTGCCGAACTCTTGCGGCTGTAACGTTTCCGTATATCT 4734728 23 100.0 49 ....................... ATAAGAAGAGGTCAAAGCTGTTACAAGAGATTGAAGTTTCCGTATATCT 4734800 23 100.0 50 ....................... TCGAATAACTGTAGTCGAATTGGGCATTTTAATTAAGTTTCCGTATATCT 4734873 23 100.0 49 ....................... TTAAGACTTCCATTTCCGCACCGTAGGTATCGTTTGTTTCCGTATATCT 4734945 23 100.0 53 ....................... GTAAATGTTTTCAAATATTCTGCTGTACCTTGCCTGCAAGTTTCCGTATATCT 4735021 23 100.0 55 ....................... AAATAATAACTTATAGCCTGTTTCTGTGGAACTAAAATCAAGTTTCCGTATATCT 4735099 23 95.7 0 ......................G | ========== ====== ====== ====== ======================= ======================================================= ================== 40 23 99.9 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTTTTTGACACTCCTTAGACAAGGGATGAAGGCTAGAGGCAGGATTTATCCTGCATTGATTTTAATCCATATTCGTGATACAACTATATTGTCACTAAAGACGTAAAAAGCTACCGAGGGACTCTCGGAAAGTTACGCTTGTCAGATATGATTTCGCCCGCCAGGTCCAAGGAAATCAGGGCAAGAACCCAAATATTTAAGGCAGTGCCTGAAACTGGGATAACTGAGGGATATAGACTGAAACTCTCTATAGAATCTCCGCGTCTTTAGACCGGAGAGTGTCAAATAAAGACAAATTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATTCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATCAGTTTCAGTTGGCGCTTGACCTGAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATCGTCTCTGGACTCCGCCCCCAGATTATGTTTCAGACGGCGGTGTTTCCGTATATCT # Right flank : GGTTGTAAAATGTAGATCATAAAAACCATATAGCATCAAAAAAAATGCCGGAATCAGCTACATCTAACAAACGTAAAAACCCATCAAAAAATACCCCTTTAATATGGGCAGATGATACCGAATTAGTTAGCTTAGTTTTTGACCTAGAAGTAACAGATTCCACTGCTCTATACTCGCAATATACCATTGGACTTCACGCTTGGTTTCTGGATCAGGTACGCCAAATTAACCCAGCGCTTTCAGCATATTTGCATGATGGTGAGTCAGAAAAAACCTTTAGTATTTCTGCACTAGAAGGTCAATTACTTCCCACAGGAAAAAAATTACAACTGCAAGCAAATCATATATATCGTTGGCAGATTAACGCCATTTCTCAACCAGTAGTTCAATTCTTGAGTGAGTGGTTAATACAACCGCCAACTACTTTAAAATTAAGAGATGTTTGCTTACAAATAAAACAGATAAGTATTGTTAATTTACCAACTACTTACAAAAAACTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //