Array 1 545634-546149 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWF01000001.1 Klebsiella quasipneumoniae strain NFIX36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 545634 28 100.0 33 ............................ TAAAAATGCGTACATTAAACGTTTTCACATTTA 545695 28 100.0 33 ............................ CAAACGAGGTACACAAAAAAAAAAACCACGAAA 545756 28 100.0 33 ............................ CAGACGGATCGCTGTCGGTTACGGCTGTTGTGT 545817 28 100.0 33 ............................ TGCCGTCAGTCATGCGCAGCGGTCCCCAGCGGT 545878 28 100.0 33 ............................ CAAAGTCTATCTCGGTTTCAAGCAGGCCCTTAG 545939 28 100.0 33 ............................ CAGCCCGGCCCGTCAGAGGCTGATTGCTGTGTA 546000 28 100.0 33 ............................ TATCATGATGCGTACCGAGTGGGGGGCTTCGGT 546061 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 546122 28 82.1 0 ...........A..........G.C.CG | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GGTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCGGGATAACAGTCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGCGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACCACGAGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGATAAGGGGAGATACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : GTGACCGTTTATCTGATGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTGTGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGACTTTATGACTCATCTGGAGATATCGCTCTCCCTATTAATTATTTTTAATTTTTATATTATTATTTTAGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTGAGCCATTGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 554855-555922 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWF01000001.1 Klebsiella quasipneumoniae strain NFIX36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 554855 28 100.0 33 ............................ GAAGACGGGGTGGTAGTACCAGGCGTCCGGGTC 554916 28 100.0 33 ............................ CAGAATCACCGCGCCGCCGCTGAAAAACTGATC 554977 28 100.0 33 ............................ TACTGGCTGGCGTACGTATTGCGATAGCACGGC 555038 28 100.0 33 ............................ CAGAATCACCGCGCCGCCGCTGAAAAACTGATC 555099 28 100.0 33 ............................ TACTGGCTGGCGTACGTATTGCGATAGCACGGC 555160 28 100.0 33 ............................ CTGGATGCTTCGCTCACGGTAGTAGCGAACGAG 555221 28 100.0 34 ............................ TGGCTCACAGGACGGCGTAAAGGGGGATTTTGTG 555283 28 100.0 33 ............................ TCCCGTCCGGTAGCAGACCTAAATCCTGGCGAT 555344 28 100.0 33 ............................ TAAGCCAGAACCTTTCCGCATCCTCGATCGCCG 555405 28 100.0 33 ............................ TGCTCCCCACATCGCACAGAGGTAAGACATGTC 555466 28 100.0 33 ............................ TATCCCCTAGAATATAGCGGCGATAATTTGTAT 555527 28 96.4 33 ..........T................. TGTCTGCATGAGCGGTTAATTGAGGCCGGAGTG 555588 28 100.0 33 ............................ CAGTGGCGGGATAAGCAGACTGGAGAGCAAAAA 555649 28 96.4 33 T........................... CATGGCACATTACTGGAGAGACTGACTCATGGC 555710 28 100.0 34 ............................ CGAGCAGGGGAGCAACAACGCGAGAGACAGCATG 555772 28 100.0 33 ............................ TGAACAGGAGAGAGACGATGCGCCTGAGCATGA 555833 28 100.0 33 ............................ GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 555894 28 82.1 0 T......A....TC..........C... | C [555915] ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGTGGACGAATGAAGCTATGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAATATTCCTCAGCCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CCGCTCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCTGCCTGCCAGAAGGCGTCTACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTGTCCGCACTTTGATAGAGACACAAAGAGACATCGCCGCTGCCCGCCAGCTCTGCGCCGTAGGTCGGCTCGCCTTCATCGACCAGCGTTACGCCAAGCGGGGCCAGAGCCTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCCTGTGGACGGGTATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCTAATAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //