Array 1 1-743 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDOI01000060.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE484 484_contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 28 96.6 32 -............................ AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 61 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 122 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 183 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 245 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 306 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [348] 348 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 409 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 470 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 531 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 592 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 653 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 714 29 96.6 0 A............................ | A [740] ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.6 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85497-87477 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDOI01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE484 484_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 85497 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 85558 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 85619 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 85680 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 85741 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 85802 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 85863 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 85924 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 85985 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 86046 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 86107 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 86168 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 86229 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 86290 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 86351 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 86412 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 86473 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 86534 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 86595 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 86656 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 86717 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 86778 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 86839 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 86900 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 86962 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 87023 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 87084 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 87145 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 87206 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 87267 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 87328 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 87389 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 87450 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //