Array 1 2338022-2334692 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016872.1 Legionella pneumophila subsp. pneumophila strain FFI104 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2338021 28 100.0 32 ............................ TGCCACCAGGATTATGCCCAAAAGCAAACAGG 2337961 28 100.0 32 ............................ ATGATGCCCGACACATCATCATATAAATGATA 2337901 28 100.0 32 ............................ ATCAGGTGGCTTGATTACCTTGGTCACTCCTG 2337841 28 100.0 32 ............................ AGATAAATGTCTCTCAACGGCTCAGAGTCTAA 2337781 28 100.0 32 ............................ TCTTCAAATCCTTCATCATCAATCCCAGTTTT 2337721 28 100.0 32 ............................ AGTCTGGAACACCAAGTGCTACTGAAGCAAGA 2337661 28 100.0 32 ............................ TAATTGAAATAACTTCTGTCCTATGTTGATTC 2337601 28 100.0 32 ............................ AGTAGAGGCAGCATTCACTGGATTAATAAATG 2337541 28 100.0 32 ............................ AAAGGCATTCAATATCGACATGATGCTTTTTA 2337481 28 100.0 32 ............................ TATTCATTCCGTGTTCTCTAAGAGCATAATAA 2337421 28 100.0 32 ............................ TTTTACCGAGCAAATAAAACAATATATCCAAT 2337361 28 100.0 32 ............................ AGCAAAAATAGCTATAGATAAATGCGTCAAGG 2337301 28 100.0 32 ............................ ATATCGCATATGATATCCGCTATTTCTTGATT 2337241 28 100.0 32 ............................ TTTCCAGTAGCTTTCTTTCTATCTTTTTTATT 2337181 28 100.0 32 ............................ ATCGCCTGATATAGCGGACGCTCTTGCAAATA 2337121 28 100.0 32 ............................ GTCCATTCTTGCGTTTCCGTCCTTGTCGTATG 2337061 28 100.0 32 ............................ AACGATGAAATTCATTTAAACGAAGACGAAGT 2337001 28 100.0 32 ............................ TACCGCTACAGTTCGAGAGCTTGTACTTCGAA 2336941 28 100.0 32 ............................ TACAGTTAGAGCAGCGTATTAACATAATTTAC 2336881 28 100.0 32 ............................ CTGAGTCCTCAGCAAAAACATTAACATTTTCT 2336821 28 100.0 32 ............................ AGTGTCATAACCTGCTTAGTTCCCCTACAGTT 2336761 28 100.0 32 ............................ CAAGGACTATTTCAAGCAGTCGGGGAGCAGGA 2336701 28 100.0 32 ............................ TATTACCAGTCACGATACTAGGTTCCCTAGTC 2336641 28 100.0 32 ............................ ATGAACTGCCAATGGAAGCCCAAGAAAAAATC 2336581 28 100.0 32 ............................ TTAATTATAGTGCTGTTATCGGCCACTGTTTC 2336521 28 100.0 32 ............................ ATTCGAAGTACAAGCTCTCGAACTGTAGCAGT 2336461 28 100.0 32 ............................ TTGTCTCTCAGCAAATAATCTTTTTAGTAGAT 2336401 28 100.0 32 ............................ CAATATTGGCATAAGCAACAACAAAAAGACGA 2336341 28 100.0 32 ............................ ATGCATCTGGGCGTTTGGATAAGCTTCTTGAT 2336281 28 100.0 32 ............................ GAGCGAAACTTCTAAATTTTCGACATCTAATA 2336221 28 100.0 32 ............................ ATTGCAAAAACTGAAAAAACCTATACCCAGGA 2336161 28 100.0 32 ............................ GATAGCATAACCTGAATCAATTGATTCAAATT 2336101 28 100.0 32 ............................ TCTTTCGTTGCGTCTTTCAACAGCCACGCCAG 2336041 28 100.0 32 ............................ TATAGAGGTTAAGCCTGAGCATTTACCTTCAG 2335981 28 100.0 32 ............................ TTTAGAAGGAGAAGCAAAAACAGACGAACCGG 2335921 28 100.0 32 ............................ ATAGGCGAGAATGACCGATGTGTAATTATAAG 2335861 28 96.4 32 A........................... AACCGAGATAGCCAAAAAGAACTTAAATTTGA 2335801 28 100.0 32 ............................ TAAGTCTGTTTGCAAAGTCACTATTTGACATG 2335741 28 100.0 32 ............................ ACAATAGTGTCATAGTCAAAAAATTTCTTAAT 2335681 28 100.0 32 ............................ TTCAGCTAAGGCTTTTTTATTAAAACTTAAAT 2335621 28 100.0 32 ............................ ATGATATCGCCAAGGCTTATTGAGTGGACAGA 2335561 28 100.0 32 ............................ ATCCTTCGAGAGGAAGGAATCCCTCCGTATGC 2335501 28 100.0 32 ............................ AAAGGAGGCAATCAAAGCGCTACCCATATGAG 2335441 28 100.0 32 ............................ TTTTCTCAAGTAAGCCGCAGGATACTTTATGT 2335381 28 100.0 32 ............................ TTCAAACGGCGGTGACATTTCTTCTGGTTTTA 2335321 28 100.0 32 ............................ TAAAATCGAAGCAAGGTGATGTTATTGGTGTT 2335261 28 100.0 32 ............................ CGCCCCAGGGCCAGCAAATAAATTAATTATCT 2335201 28 100.0 32 ............................ TAAAGACGTGTTGGCTCTAATTCTACCGAATA 2335141 28 100.0 32 ............................ TAAACAAGGATGTGAAGTTAGATTTTTTTCTA 2335081 28 100.0 32 ............................ ATATGGCCAAAGTTGTTCCAAAACATCAGAAC 2335021 28 100.0 32 ............................ AGACAACCAGGCCAAAACCCAAATTTCCAATT 2334961 28 100.0 33 ............................ GAAGGCGCAAAGATTAGATACGGATCGCAGCAT 2334900 28 100.0 32 ............................ AATGACAAAAATCATATCAATAAATAAAAACA 2334840 28 100.0 32 ............................ ATTCATCGCTTGACCAATAGAAAGGTTCATCT 2334780 28 100.0 33 ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 2334719 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACACCTTGACAGAGGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAGGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAATGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAAGTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAAAACAAGGTAAATTCCTTGAATTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : TTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTCTCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATCCCCTCCAACGTTTGAGATGGGGGAAGGCATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //