Array 1 2279-1252 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYWW01000065.1 Lactobacillus jensenii strain UMB246 NODE_65_length_2696_cov_12.644220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2278 36 100.0 30 .................................... CTTTGCTAAGCTGGTTCCTGATGTTAATGC 2212 36 100.0 30 .................................... AAATAATTTTAAAAAAGACACCCAATTTTT 2146 36 100.0 30 .................................... ACAAGGCTTATCAACTCTCTTAAACGTGTT 2080 36 100.0 31 .................................... TATAGGAGAAAAATATGATCAGTTTTGTCTG 2013 36 100.0 30 .................................... CAAGCTACCTACTGATTTAACTTATTATGT 1947 36 100.0 30 .................................... AATTTCATTTCTGGCGGTGCTACGTGGTTA 1881 36 100.0 30 .................................... ATTAGGATACTGTGTAGGATATACCTTCCA 1815 36 100.0 30 .................................... TTCCAATGGTGAAACAAGAGTTATCAAATA 1749 36 100.0 30 .................................... TGTTGCAAGCGCCGACCCTTATGGTGGTAT 1683 36 100.0 30 .................................... CTAAAGCTTTTTCAGCATCATTTTTAGTGT 1617 36 100.0 30 .................................... AAATTTTTGCAGGAAATTGCCGATGAGCTA 1551 36 100.0 30 .................................... GGCTAAAGACAATAAGATTAATGTTTCTAA 1485 36 100.0 30 .................................... ACTACCAGAATGGGCAGTTGCAGAAAAGAT 1419 36 100.0 30 .................................... GAAAACTTGAAGTCGCAACTCAATAGCGAG 1353 36 100.0 30 .................................... AAAAGTAGTCGATGAATATTTAAGGTTAGT 1287 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.8 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : ATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCATTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTC # Right flank : GTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //