Array 1 54381-55324 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHV01000003.1 Escherichia coli strain MOD1-EC6487 MOD1-EC6487_3_length_176188_cov_146.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54381 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG 54442 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 54503 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 54564 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 54625 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 54686 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 54747 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 54808 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 54869 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 54930 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 54991 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 55052 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 55113 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 55174 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 55235 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 55296 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81024-82760 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHV01000003.1 Escherichia coli strain MOD1-EC6487 MOD1-EC6487_3_length_176188_cov_146.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81024 29 100.0 32 ............................. ACATACTTTGCAGGCGATCGGCAGCTCTGGAA 81085 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 81146 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 81207 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 81268 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 81329 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 81390 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 81451 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 81512 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 81573 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 81634 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 81695 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 81756 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 81817 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 81878 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 81939 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 82000 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 82061 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 82122 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 82183 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 82244 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 82305 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 82366 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 82427 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 82488 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 82549 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 82610 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 82671 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 82732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //